AT1G35550

Elongation factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
13112506 .. 13113136
631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G35550.1

Sequence Viewer

Length: 315 bp
ATGAACCACCTTGGTCAGATTAAAAATGGTTACACCCCAGTTCTTGATTGCCACACCTCTCACATTGCAGTCAAGTTCTCTGAGATCTTGACCAAGATTGACTGGCGTACTGGTCATGAGATTGAGAAGGAGCCAAAGTTTTTAAAGAACAGTGAGGCCGCTATTATTAATATGACTCCCACCAAGCCTATGGTGGTTGAGGCTTACTCTGCGTACCCACCCCTGGGACGTTTTGCTATTAGGGACATGAGGCAAACCGTTGGTGTTGGAGTTATCAAGAGTGTTGTCAAGAAGGACCCAAGTGGAGCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.58

Weight (kDa)

9.48

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP-eEF1A_C PF22594 1 - 93 3.9e-34 GTP-eEF1A C-terminal domain-like
GTP_EFTU_D3 PF03143 5 - 95 5e-23 Elongation factor Tu C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35550
malus_domestica MD12G1214600.v1.1 MD16G1024200.v1.1 MD17G1192800.v1.1
pyrus_communis pycom04g00880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AfaI GTAC 2 cut(s) 109, 215
AfiI CCNNNNNNNGG 2 cut(s) 223, 224
AjnI CCWGG 1 cut(s) 222
AoxI GGCC 1 cut(s) 156
AseI ATTAAT 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 295
AvaII GGWCC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 224
BglII AGATCT 1 cut(s) 84
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 3 cut(s) 132, 297, 307
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BsaJI CCNNGG 3 cut(s) 10, 222, 223
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 224
Bse1I ACTGG 3 cut(s) 38, 107, 115
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 3 cut(s) 10, 222, 223
BseLI CCNNNNNNNGG 2 cut(s) 223, 224
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 3 cut(s) 38, 107, 115
BshFI GGCC 1 cut(s) 158
BslFI GGGAC 2 cut(s) 240, 257
BslI CCNNNNNNNGG 2 cut(s) 223, 224
BsmFI GGGAC 2 cut(s) 240, 257
BsnI GGCC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 132, 297, 307
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 3 cut(s) 38, 107, 115
BssECI CCNNGG 3 cut(s) 10, 222, 223
BssMI GATC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 152, 259
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 157
CciI TCATGA 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 108, 214
CviAII CATG 2 cut(s) 116, 247
CviJI RGCY 5 cut(s) 133, 158, 187, 203, 308
CviKI_1 RGCY 5 cut(s) 133, 158, 187, 203, 308
CviQI GTAC 2 cut(s) 108, 214
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
DraI TTTAAA 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 2 cut(s) 119, 250
FaiI YATR 4 cut(s) 117, 173, 191, 248
FaqI GGGAC 2 cut(s) 240, 257
FatI CATG 2 cut(s) 115, 246
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 158
Hin1II CATG 2 cut(s) 119, 250
HinfI GANTC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 18, 82
Hpy188III TCNNGA 5 cut(s) 44, 88, 116, 277, 289
HpyAV CCTTC 2 cut(s) 121, 286
HpyCH4III ACNGT 2 cut(s) 152, 259
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 2 cut(s) 119, 250
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 130, 305
LpnPI CCDG 5 cut(s) 51, 88, 96, 209, 236
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 29
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MflI RGATCY 1 cut(s) 84
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 67, 148, 193, 243
MseI TTAA 3 cut(s) 21, 143, 168
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 1 cut(s) 84
NlaIII CATG 2 cut(s) 119, 250
NlaIV GGNNCC 3 cut(s) 132, 297, 307
PagI TCATGA 1 cut(s) 115
PasI CCCWGGG 1 cut(s) 223
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 295
PshBI ATTAAT 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 132, 297, 307
PspPI GGNCC 1 cut(s) 295
PspPPI RGGWCCY 1 cut(s) 295
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 2 cut(s) 109, 215
RsaNI GTAC 2 cut(s) 108, 214
SaqAI TTAA 3 cut(s) 21, 143, 168
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 224
SetI ASST 3 cut(s) 12, 59, 232
SinI GGWCC 1 cut(s) 295
SsiI CCGC 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 152, 259
TaiI ACGT 1 cut(s) 232
TauI GCSGC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 21, 143, 168
Tru9I TTAA 3 cut(s) 21, 143, 168
TscAI CASTG 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 295
VspI ATTAAT 1 cut(s) 168
XcmI CCANNNNNNNNNTGG 2 cut(s) 187, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.