MD17G1192800.v1.1

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
23091356 .. 23091535
180 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1192800.v1.1.491

Sequence Viewer

Length: 180 bp
ATGGTGAAGATGCTTCCTACCAAGCCCATGGTTGTGGAGACATTTTCTGAGTACCCTCCATTAGGTCGCTTTGCTGTTCGTGGCATGTGCCAGACTGTTGCTTTTGGTGTTATCCAGAGTGTTGAGAAGAAGGATCCCAGCGGTGACAAAGTCACCAAGTTTGCTGCCAAGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

60

Amino Acids

6.53

Weight (kDa)

9.84

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP-eEF1A_C PF22594 1 - 39 7e-11 GTP-eEF1A C-terminal domain-like
GTP_EFTU_D3 PF03143 2 - 41 3.7e-06 Elongation factor Tu C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35550
malus_domestica MD12G1214600.v1.1 MD16G1024200.v1.1 MD17G1192800.v1.1
pyrus_communis pycom04g00880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 141
AclWI GGATC 2 cut(s) 128, 141
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 128, 141
ApeKI GCWGC 1 cut(s) 164
AsuHPI GGTGA 3 cut(s) 16, 145, 155
BamHI GGATCC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 32
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 151
BseYI CCCAGC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 133
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 2 cut(s) 128, 141
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 60
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 2 cut(s) 28, 34
BstYI RGATCY 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 27
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 28, 85
CviJI RGCY 1 cut(s) 25
CviKI_1 RGCY 1 cut(s) 25
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 27
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 31, 88
FaiI YATR 2 cut(s) 29, 86
FatI CATG 2 cut(s) 27, 84
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
GsaI CCCAGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 31, 88
HphI GGTGA 3 cut(s) 16, 145, 155
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 2 cut(s) 31, 88
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 104, 128, 151
Lsp1109I GCAGC 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 143, 151
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 2 cut(s) 19, 139
MflI RGATCY 1 cut(s) 133
MnlI CCTC 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 141
NcoI CCATGG 1 cut(s) 27
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 31, 88
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 143, 151
NspI RCATGY 1 cut(s) 88
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 32
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 133
SetI ASST 1 cut(s) 67
SgeI CNNG 8 cut(s) 34, 40, 92, 97, 103, 127, 150, 169
SmiMI CAYNNNNRTG 1 cut(s) 32
SsiI CCGC 1 cut(s) 141
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 97
TseFI GTSAC 2 cut(s) 143, 151
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 2 cut(s) 143, 151
Tth111I GACNNNGTC 1 cut(s) 149
XagI CCTNNNNNAGG 1 cut(s) 60
XceI RCATGY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.