AT1G43580
ERF Family

PAP2 superfamily C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016141
Physical Location & Seq
Reverse (-)
16410372 .. 16412736
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G43580.1

Sequence Viewer

Length: 1266 bp
ATGACTAAAGGTGGACTTGGAATAGCCGCGATGTCATACGTGGTAATCGATTACATGCGTTACGTGTCACCGGTGTGGCATTCTCGTCTTATGCCAGTTCTTTGGTCTGTTCTTGCTATCGCCGTCGTCACTCGTGTTCTGTTCTATAAACACTGGTCTAAAGAGCTACGAGCAGCTATTCCTTTCCTTGGTTCTATCGTATTCCTTCTCTGTGCTCTTCTCTTTGAAGCTCTTTGTGTTCGCTCTGTTACTGCTGTTCTTGGCTTAGATTGGCACCGGGAAACACCTCCACTTCCTGATACAGGCCAATGGTTCTTACTTGCACTAAACGAGAGCCTTCCCGGGACACTTGTGGAAATCCTAAGAGCACATATCATTGGATTGCATCATTTTCTTATGTTGTTTATAATGTTGGGTTTCTCGGTGGTGTTCGACTCAGTGAAAGCTCCAGGTTTAGGATTAGGCGCGAGATACATATTCACGATGGGAGTTGGACGTCTTTTAAGAGCTATAACCTTTGTATCAACTATATTACCTTCAGCTAGACCTTGGTGTGCTTCAGCCCGGTTTAACAATGTACCTTCTCAGCCTCATCGTTGGGCTCAGAAATATTATGTCCCTTATGCTAATGATCCTGCTGCAATTAGAAAGCTCCTTCATTGGGATGCAGCTTATGCTGATCCAGGAAGTTACATTGGTGACTATAGAGCTGATTGGGGTTCAATGAGCTTCCTTAGTGAGTTCTTGAGACCGAGTTACTCTGAAGGGTCTTCTTGGTTTGCTCTATTAAAGAAAGCCGGAGGTGGTTGTAATGATCTCATGTATAGTGGTCATATGCTTGTAGCTGTCTTAACCGCTATGGCTTGGACGGAGGCTTATGGAGGTTTCTCTTCTGCAATGATATGGTTGTTCGTGGCACACAGCGCACAGAGAGAAATACGAGAGCGACACCATTACACAGTAGACTGTATTGTGGCGATATATGTTGGTATCCTTCTCTGGAAAATGACGGGTTTTATCTGGTCAGCCGAGAGAAAAACGAAGCAGACGAAACTAGAGAAGATTCAGAATAGTCTGATTCACGCTGCAAAGGATGGAGACATAGAGACTGTAAGGAGACTTGTGGAGGAGATAGAGGTAAGCTCTAGGGTGGAGAAGCAGAGTAAAGTCATCTCGAACCGGACAATGACTGTGTTTGCGTGTGCCACAGTGATCACAACACTCACTATAGTGATTCTGGCATTGACTTTGACAAGCGACGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2_C

Protein Analysis

421

Amino Acids

47.12

Weight (kDa)

9.19

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2_C PF14360 269 - 336 5.8e-15 PAP2 superfamily C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43580
fragaria_vesca FvH4_2g13470
malus_domestica MD05G1027600.v1.1 MD10G1028400.v1.1
prunus_persica Prupe.8G033400_v2.0.a1
pyrus_communis pycom05g01970 pycom10g01840
rosa_chinensis RchiOBHm_Chr6g0275101
rosa_laevigata RLG00000013497
rosa_multiflora Rmu_sc0000447.1_g000026 Rmu_sc0010802.1_g000002
rosa_roxburghii Rroxscaffold_7G00193630
rosa_rugosa Rorug06G0088200
rosa_samantha Rh6BG205800
rosa_wichuraiana Rw6G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AatII GACGTC 1 cut(s) 499
AccB1I GGYRCC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 963
AccII CGCG 2 cut(s) 29, 467
AciI CCGC 2 cut(s) 27, 855
AclWI GGATC 2 cut(s) 626, 674
AcuI CTGAAG 3 cut(s) 522, 543, 783
AcyI GRCGYC 1 cut(s) 496
AfaI GTAC 1 cut(s) 579
AfiI CCNNNNNNNGG 4 cut(s) 188, 302, 455, 661
AflIII ACRYGT 1 cut(s) 63
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 2 cut(s) 227, 723
AjnI CCWGG 2 cut(s) 448, 682
AleI CACNNNNGTG 2 cut(s) 73, 1229
Alw21I GWGCWC 2 cut(s) 217, 370
Alw26I GTCTC 4 cut(s) 742, 1092, 1100, 1111
AlwI GGATC 2 cut(s) 626, 674
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 4 cut(s) 173, 638, 668, 1085
AsiGI ACCGGT 1 cut(s) 70
AspLEI GCGC 2 cut(s) 467, 926
AsuC2I CCSGG 4 cut(s) 278, 342, 343, 565
AsuHPI GGTGA 2 cut(s) 60, 710
AvaI CYCGRG 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanI GGYRCC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 604
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 762
Bbv12I GWGCWC 2 cut(s) 217, 370
BbvI GCAGC 4 cut(s) 185, 625, 680, 1072
BccI CCATC 2 cut(s) 478, 1088
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 2 cut(s) 450, 684
BciVI GTATCC 1 cut(s) 1001
BclI TGATCA 1 cut(s) 1212
BcnI CCSGG 4 cut(s) 278, 342, 343, 565
BcoDI GTCTC 4 cut(s) 742, 1092, 1100, 1111
BfaI CTAG 3 cut(s) 543, 1055, 1146
BfmI CTRYAG 2 cut(s) 703, 1227
BfuI GTATCC 1 cut(s) 1001
BisI GCNGC 5 cut(s) 27, 174, 639, 669, 1086
BlsI GCNGC 5 cut(s) 28, 175, 640, 670, 1087
Bme1390I CCNGG 6 cut(s) 278, 342, 343, 450, 565, 684
BmeT110I CYCGRG 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 6 cut(s) 278, 342, 343, 450, 565, 684
BmsI GCATC 2 cut(s) 394, 655
BpiI GAAGAC 1 cut(s) 762
BplI GAGNNNNNCTC 2 cut(s) 1127, 1159
BpmI CTGGAG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 766
BpuMI CCSGG 4 cut(s) 278, 342, 343, 565
Bsa29I ATCGAT 1 cut(s) 48
BsaAI YACGTR 2 cut(s) 40, 64
BsaHI GRCGYC 1 cut(s) 496
BsaI GGTCTC 1 cut(s) 742
BsaJI CCNNGG 3 cut(s) 187, 341, 548
BsaWI WCCGGW 2 cut(s) 70, 1179
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 302, 455, 661
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 95, 158
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 2 cut(s) 450, 684
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 187, 341, 548
BseGI GGATG 2 cut(s) 670, 1099
BseLI CCNNNNNNNGG 4 cut(s) 188, 302, 455, 661
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 3 cut(s) 450, 599, 617
BseNI ACTGG 2 cut(s) 95, 158
BseRI GAGGAG 1 cut(s) 1142
BseXI GCAGC 4 cut(s) 185, 625, 680, 1072
Bsh1236I CGCG 2 cut(s) 29, 467
BshFI GGCC 1 cut(s) 306
BshNI GGYRCC 1 cut(s) 273
BshTI ACCGGT 1 cut(s) 70
BshVI ATCGAT 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 217, 370
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 6 cut(s) 71, 277, 342, 565, 798, 1180
BslFI GGGAC 2 cut(s) 358, 602
BslI CCNNNNNNNGG 4 cut(s) 188, 302, 455, 661
BsmAI GTCTC 4 cut(s) 742, 1092, 1100, 1111
BsmFI GGGAC 2 cut(s) 358, 602
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 742
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 217, 370, 604
Bsp143I GATC 4 cut(s) 631, 679, 814, 1212
BspACI CCGC 2 cut(s) 27, 855
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 3 cut(s) 449, 598, 616
BspDI ATCGAT 1 cut(s) 48
BspFNI CGCG 2 cut(s) 29, 467
BspLI GGNNCC 1 cut(s) 275
BspPI GGATC 2 cut(s) 626, 674
BspQI GCTCTTC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 742
BsrDI GCAATG 1 cut(s) 903
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 2 cut(s) 95, 158
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 187, 341, 548
BssMI GATC 4 cut(s) 631, 679, 814, 1212
BssNI GRCGYC 1 cut(s) 496
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 2 cut(s) 187, 548
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 450, 684
Bst4CI ACNGT 5 cut(s) 961, 968, 1111, 1192, 1210
Bst6I CTCTTC 2 cut(s) 222, 895
BstACI GRCGYC 1 cut(s) 496
BstAPI GCANNNNNTGC 1 cut(s) 674
BstBAI YACGTR 2 cut(s) 40, 64
BstDEI CTNAG 6 cut(s) 265, 362, 436, 585, 603, 734
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 670, 1099
BstFNI CGCG 2 cut(s) 29, 467
BstHHI GCGC 2 cut(s) 467, 926
BstKTI GATC 4 cut(s) 634, 682, 817, 1215
BstMAI GTCTC 4 cut(s) 742, 1092, 1100, 1111
BstMBI GATC 4 cut(s) 631, 679, 814, 1212
BstMWI GCNNNNNNNGC 2 cut(s) 674, 923
BstNI CCWGG 2 cut(s) 450, 684
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 6 cut(s) 276, 340, 341, 448, 563, 682
BstSFI CTRYAG 2 cut(s) 703, 1227
BstUI CGCG 2 cut(s) 29, 467
BstV1I GCAGC 4 cut(s) 185, 625, 680, 1072
BstV2I GAAGAC 1 cut(s) 762
BstXI CCANNNNNNTGG 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 48
BsuI GTATCC 1 cut(s) 1001
BsuRI GGCC 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 2 cut(s) 670, 1099
BtsIMutI CAGTG 3 cut(s) 151, 444, 1215
CfoI GCGC 2 cut(s) 467, 926
Cfr10I RCCGGY 1 cut(s) 70
Cfr9I CCCGGG 1 cut(s) 341
ClaI ATCGAT 1 cut(s) 48
Csp6I GTAC 1 cut(s) 578
CspAI ACCGGT 1 cut(s) 70
CviAII CATG 2 cut(s) 55, 820
CviQI GTAC 1 cut(s) 578
DdeI CTNAG 6 cut(s) 265, 362, 436, 585, 603, 734
DpnI GATC 4 cut(s) 633, 681, 816, 1214
DpnII GATC 4 cut(s) 631, 679, 814, 1212
Eam1104I CTCTTC 2 cut(s) 222, 895
EarI CTCTTC 2 cut(s) 222, 895
Eco130I CCWWGG 2 cut(s) 187, 548
Eco24I GRGCYC 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 742
Eco57I CTGAAG 3 cut(s) 522, 543, 783
Eco88I CYCGRG 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 448, 682
EcoT14I CCWWGG 2 cut(s) 187, 548
EcoT38I GRGCYC 1 cut(s) 604
ErhI CCWWGG 2 cut(s) 187, 548
FaeI CATG 2 cut(s) 58, 823
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 2 cut(s) 358, 602
FatI CATG 2 cut(s) 54, 819
FauNDI CATATG 1 cut(s) 834
FbaI TGATCA 1 cut(s) 1212
FblI GTMKAC 1 cut(s) 963
Fnu4HI GCNGC 5 cut(s) 27, 174, 639, 669, 1086
FokI GGATG 2 cut(s) 677, 1106
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 5 cut(s) 27, 174, 639, 669, 1086
FspBI CTAG 3 cut(s) 543, 1055, 1146
GlaI GCGC 2 cut(s) 466, 925
GluI GCNGC 5 cut(s) 27, 174, 639, 669, 1086
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 1 cut(s) 306
HapII CCGG 6 cut(s) 71, 277, 342, 565, 798, 1180
HhaI GCGC 2 cut(s) 467, 926
Hin1I GRCGYC 1 cut(s) 496
Hin1II CATG 2 cut(s) 58, 823
Hin6I GCGC 2 cut(s) 465, 924
HinP1I GCGC 2 cut(s) 465, 924
HinfI GANTC 4 cut(s) 434, 1063, 1078, 1234
HpaII CCGG 6 cut(s) 71, 277, 342, 565, 798, 1180
HphI GGTGA 2 cut(s) 60, 710
Hpy166II GTNNAC 2 cut(s) 14, 964
Hpy188I TCNGA 4 cut(s) 606, 763, 1068, 1077
Hpy188III TCNNGA 5 cut(s) 296, 481, 745, 1000, 1174
Hpy8I GTNNAC 2 cut(s) 14, 964
Hpy99I CGWCG 2 cut(s) 128, 1262
HpyAV CCTTC 7 cut(s) 215, 347, 546, 591, 665, 758, 1004
HpyCH4III ACNGT 5 cut(s) 961, 968, 1111, 1192, 1210
HpyCH4IV ACGT 3 cut(s) 39, 63, 496
HpyCH4V TGCA 6 cut(s) 323, 385, 641, 668, 896, 1088
HpyF10VI GCNNNNNNNGC 2 cut(s) 674, 923
HpyF3I CTNAG 6 cut(s) 265, 362, 436, 585, 603, 734
HpySE526I ACGT 3 cut(s) 39, 63, 496
Hsp92I GRCGYC 1 cut(s) 496
Hsp92II CATG 2 cut(s) 58, 823
HspAI GCGC 2 cut(s) 465, 924
Ksp22I TGATCA 1 cut(s) 1212
Kzo9I GATC 4 cut(s) 631, 679, 814, 1212
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 451, 657
Lsp1109I GCAGC 4 cut(s) 185, 625, 680, 1072
LweI GCATC 2 cut(s) 394, 655
MaeI CTAG 3 cut(s) 543, 1055, 1146
MaeII ACGT 3 cut(s) 39, 63, 496
MaeIII GTNAC 7 cut(s) 59, 66, 127, 247, 689, 698, 755
MalI GATC 4 cut(s) 633, 681, 816, 1214
MboI GATC 4 cut(s) 631, 679, 814, 1212
MboII GAAGA 4 cut(s) 209, 762, 882, 1072
MhlI GDGCHC 3 cut(s) 217, 370, 604
MluCI AATT 1 cut(s) 642
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 472
MnlI CCTC 7 cut(s) 297, 600, 794, 865, 875, 1120, 1129
MseI TTAA 4 cut(s) 503, 570, 788, 851
MslI CAYNNNNRTG 3 cut(s) 73, 663, 1229
MspI CCGG 6 cut(s) 71, 277, 342, 565, 798, 1180
MspR9I CCNGG 6 cut(s) 278, 342, 343, 450, 565, 684
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 2 cut(s) 450, 684
MvnI CGCG 2 cut(s) 29, 467
MwoI GCNNNNNNNGC 2 cut(s) 674, 923
NciI CCSGG 4 cut(s) 278, 342, 343, 565
NdeI CATATG 1 cut(s) 834
NdeII GATC 4 cut(s) 631, 679, 814, 1212
NlaIII CATG 2 cut(s) 58, 823
NlaIV GGNNCC 1 cut(s) 275
NmeAIII GCCGAG 1 cut(s) 1054
NmuCI GTSAC 3 cut(s) 66, 127, 698
NspI RCATGY 1 cut(s) 58
OliI CACNNNNGTG 2 cut(s) 73, 1229
PciSI GCTCTTC 1 cut(s) 222
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 1046
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 3 cut(s) 1063, 1078, 1234
PfoI TCCNGGA 1 cut(s) 682
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 5 cut(s) 28, 175, 640, 670, 1087
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
Ppu21I YACGTR 2 cut(s) 40, 64
PsiI TTATAA 1 cut(s) 407
Psp6I CCWGG 2 cut(s) 448, 682
PspGI CCWGG 2 cut(s) 448, 682
PspN4I GGNNCC 1 cut(s) 275
RsaI GTAC 1 cut(s) 579
RsaNI GTAC 1 cut(s) 578
RseI CAYNNNNRTG 3 cut(s) 73, 663, 1229
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 4 cut(s) 503, 570, 788, 851
SatI GCNGC 5 cut(s) 27, 174, 639, 669, 1086
Sau3AI GATC 4 cut(s) 631, 679, 814, 1212
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 6 cut(s) 278, 342, 343, 450, 565, 684
SduI GDGCHC 3 cut(s) 217, 370, 604
SfaNI GCATC 2 cut(s) 394, 655
SfcI CTRYAG 2 cut(s) 703, 1227
SgrAI CRCCGGYG 1 cut(s) 70
SmaI CCCGGG 1 cut(s) 343
SmiMI CAYNNNNRTG 3 cut(s) 73, 663, 1229
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
Sse9I AATT 1 cut(s) 642
SsiI CCGC 2 cut(s) 27, 855
SspI AATATT 1 cut(s) 611
SspMI CTAG 3 cut(s) 543, 1055, 1146
StyD4I CCNGG 6 cut(s) 276, 340, 341, 448, 563, 682
StyI CCWWGG 2 cut(s) 187, 548
TaaI ACNGT 5 cut(s) 961, 968, 1111, 1192, 1210
TaiI ACGT 3 cut(s) 42, 66, 499
TaqI TCGA 3 cut(s) 48, 432, 1175
TaqII GACCGA 1 cut(s) 766
TasI AATT 1 cut(s) 642
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 3 cut(s) 1063, 1078, 1234
Tru1I TTAA 4 cut(s) 503, 570, 788, 851
Tru9I TTAA 4 cut(s) 503, 570, 788, 851
TscAI CASTG 3 cut(s) 158, 444, 1215
TseFI GTSAC 3 cut(s) 66, 127, 698
TseI GCWGC 4 cut(s) 173, 638, 668, 1085
Tsp45I GTSAC 3 cut(s) 66, 127, 698
TspDTI ATGAA 1 cut(s) 647
TspGWI ACGGA 1 cut(s) 884
TspMI CCCGGG 1 cut(s) 341
TspRI CASTG 3 cut(s) 158, 444, 1215
XagI CCTNNNNNAGG 1 cut(s) 300
XceI RCATGY 1 cut(s) 58
XmaI CCCGGG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 963
XspI CTAG 3 cut(s) 543, 1055, 1146
ZraI GACGTC 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.