pycom10g01840
ERF Family

PAP2 superfamily C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016141
Physical Location & Seq
Forward (+)
1931298 .. 1936591
5294 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01840.3

Sequence Viewer

Length: 1368 bp
ATGTTCAAACCCCCAAGACCCAACCTCCAGCTCCCGGTATTCTTTAAACCAGCCACGCCGTCAGCTCACTCTTTCTCATTCACCATCATGCGGTGGCTGCCGCTGAGGTCCGGTGGCCTTGGAATCGCCGCCGTGGCCTATGTGGCAGTCGACTACCTCCGCCACCTCTCGCCCACTTGGCACGGCCGTCTTCAGCCTGCGCTGCACACCGTACTCGCTGTCATTGCCGTCAGTCGGGTCCCTTTCTACAAGCACTGGACCTCTGAGTTTCGCGTCGTCTTTCCCTTCATCGGTTCCATGCTCTTTATGCTTTTGGCTCTTCTCTTTGAAGCTCTCTGCGTCCGCTTTGTCACCGCCGCCCTCGGCCTTGATTGGAACAGTCGTACATCTCCTCTTCCAGACACTGGCCAGTGGTTGCTTTTGGCACTGAATGAGAAACTTCCTCATACCTTAGTTGAAATATTGAGAGCCCGTATTATTGGACTGCATCATTTCCTCATGTTATTTATGCTGTTGGCTTTTTCCGTACTGTTTGACTCTGTGAAAGCTCCTGGCCTTGGACTAGGTGCACGGTACATGTTCACCATGGGTATTGGCCGTCTTCTTCGTGCCATAACTTTTGTATCAACTGTTCTGCCGTCTGCCCGGCCTTGGTGTGCTACTGCTCGTTTCACAGTCCCTTCATATCCTCATCGCTGGGCTCAGAAGTATTATGTACCTTATGCTTCGGATTCTAATGCTATTCGTGAATTATTACGACAGGATATGGCCTTTGCTGATACTGGAAAAGTACTTGCGGACTTCCGGCCAGATTGGGGTCGAATGAGCTTCCTAATAGAATTCTTGCGACCAACCGCGATGGATGGGCCATGGTATAATTTACTGAAGAATGCTGGAGGTGGCTGCAATGACCTCGTGTACAGTGGACACATGCTAGTTGCTGTATTGACAGCTATGGCCTGGACGGAAGCTTATGGTGGTTATAGCTCAGTTATCATATGGTTACTTGTTGGGCATTCTGCACAGAGAGAAATACGGGAACGTCACCATTATAGCGTAGACTGTGTCGTGGCCATTTATGTGGGAATCCTTCTTTGGAAGATGACAAGTTTTTGGTGGCCAGCCAAGGATGCATCCAGAGAAAGGAGGATTGCAATGCTTGAGAAGATTCAAAGTCGACTCACCCAAGCTGCCAAGGACTACGATGTAGATGAAGTGAGAGAACTTCTTAGAGAAGTTGAGTTGGGAAGTCAAGAGAGCCAGAATAACAAAGGGCCGAGCACGGGTATGTGGTTATTTGCTTGTGCCATCATAGTAACTGCCATCACCATTGTTCTTCTTGCCTTGACGTTGACAAGCGGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2_C

Protein Analysis

456

Amino Acids

51.24

Weight (kDa)

9.53

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43580
fragaria_vesca FvH4_2g13470
malus_domestica MD05G1027600.v1.1 MD10G1028400.v1.1
prunus_persica Prupe.8G033400_v2.0.a1
pyrus_communis pycom05g01970 pycom10g01840
rosa_chinensis RchiOBHm_Chr6g0275101
rosa_laevigata RLG00000013497
rosa_multiflora Rmu_sc0000447.1_g000026 Rmu_sc0010802.1_g000002
rosa_roxburghii Rroxscaffold_7G00193630
rosa_rugosa Rorug06G0088200
rosa_samantha Rh6BG205800
rosa_wichuraiana Rw6G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 404
AccI GTMKAC 3 cut(s) 150, 1059, 1177
AccII CGCG 2 cut(s) 273, 857
AcoI YGGCCR 6 cut(s) 184, 406, 595, 806, 1071, 1118
AcsI RAATTY 1 cut(s) 839
AcuI CTGAAG 2 cut(s) 176, 905
AfaI GTAC 7 cut(s) 213, 385, 528, 575, 717, 792, 920
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 4 cut(s) 7, 329, 458, 1172
AjnI CCWGG 2 cut(s) 550, 959
AjuI GAANNNNNNNTTGG 2 cut(s) 1078, 1110
AluBI AGCT 9 cut(s) 31, 65, 332, 548, 828, 953, 971, 987, 1190
AluI AGCT 9 cut(s) 31, 65, 332, 548, 828, 953, 971, 987, 1190
Alw21I GWGCWC 2 cut(s) 571, 1283
Alw44I GTGCAC 1 cut(s) 567
AlwNI CAGNNNCTG 1 cut(s) 404
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 4 cut(s) 97, 202, 903, 1190
ApoI RAATTY 1 cut(s) 839
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 5 cut(s) 108, 238, 258, 866, 1274
AsuC2I CCSGG 2 cut(s) 35, 646
AsuHPI GGTGA 6 cut(s) 73, 343, 574, 1037, 1174, 1318
AvaII GGWCC 3 cut(s) 108, 238, 258
BaeGI GKGCMC 1 cut(s) 571
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BalI TGGCCA 3 cut(s) 408, 1073, 1120
BanII GRGCYC 2 cut(s) 472, 703
BauI CACGAG 1 cut(s) 914
BbsI GAAGAC 2 cut(s) 182, 593
Bbv12I GWGCWC 2 cut(s) 571, 1283
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 4 cut(s) 84, 189, 890, 1177
BccI CCATC 5 cut(s) 92, 853, 857, 1316, 1331
BceAI ACGGC 7 cut(s) 43, 116, 171, 199, 212, 582, 622
BcgI CGANNNNNNTGC 2 cut(s) 895, 929
BciT130I CCWGG 2 cut(s) 552, 961
BcnI CCSGG 2 cut(s) 35, 646
BfaI CTAG 2 cut(s) 563, 935
BglI GCCNNNNNGGC 3 cut(s) 134, 143, 178
BisI GCNGC 7 cut(s) 98, 101, 129, 203, 357, 904, 1191
BlsI GCNGC 7 cut(s) 99, 102, 130, 204, 358, 905, 1192
BmcAI AGTACT 1 cut(s) 792
Bme1390I CCNGG 4 cut(s) 35, 552, 646, 961
Bme18I GGWCC 3 cut(s) 108, 238, 258
BmgT120I GGNCC 5 cut(s) 108, 238, 258, 866, 1274
BmiI GGNNCC 3 cut(s) 239, 240, 295
BmrFI CCNGG 4 cut(s) 35, 552, 646, 961
BmsI GCATC 3 cut(s) 496, 1120, 1142
BpiI GAAGAC 2 cut(s) 182, 593
BpmI CTGGAG 2 cut(s) 11, 915
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 1181
BpuMI CCSGG 2 cut(s) 35, 646
BsaJI CCNNGG 9 cut(s) 118, 132, 361, 556, 585, 650, 869, 1125, 1194
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bse1I ACTGG 4 cut(s) 260, 409, 409, 787
Bse3DI GCAATG 3 cut(s) 222, 913, 1161
BseBI CCWGG 2 cut(s) 552, 961
BseDI CCNNGG 9 cut(s) 118, 132, 361, 556, 585, 650, 869, 1125, 1194
BseGI GGATG 3 cut(s) 868, 1133, 1135
BseMI GCAATG 3 cut(s) 222, 913, 1161
BseMII CTCAG 4 cut(s) 95, 255, 716, 1002
BseNI ACTGG 4 cut(s) 260, 409, 409, 787
BseRI GAGGAG 1 cut(s) 381
BseSI GKGCMC 1 cut(s) 571
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 4 cut(s) 84, 189, 890, 1177
BseYI CCCAGC 1 cut(s) 696
BsgI GTGCAG 2 cut(s) 188, 1005
Bsh1236I CGCG 2 cut(s) 273, 857
Bsh1285I CGRYCG 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 2 cut(s) 571, 1283
BsiSI CCGG 4 cut(s) 35, 111, 646, 805
BslFI GGGAC 2 cut(s) 224, 662
BsmFI GGGAC 2 cut(s) 224, 662
BsmI GAATGC 2 cut(s) 895, 1015
Bsp1286I GDGCHC 4 cut(s) 472, 571, 703, 1283
Bsp1407I TGTACA 1 cut(s) 918
Bsp19I CCATGG 2 cut(s) 585, 869
BspCNI CTCAG 4 cut(s) 96, 256, 715, 1001
BspFNI CGCG 2 cut(s) 273, 857
BspLI GGNNCC 3 cut(s) 239, 240, 295
BspQI GCTCTTC 1 cut(s) 324
BsrDI GCAATG 3 cut(s) 222, 913, 1161
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 4 cut(s) 260, 409, 409, 787
BssECI CCNNGG 9 cut(s) 118, 132, 361, 556, 585, 650, 869, 1125, 1194
BssSI CACGAG 1 cut(s) 914
BssT1I CCWWGG 7 cut(s) 118, 556, 585, 650, 869, 1125, 1194
Bst2BI CACGAG 1 cut(s) 914
Bst2UI CCWGG 2 cut(s) 552, 961
Bst4CI ACNGT 8 cut(s) 211, 380, 531, 573, 631, 676, 923, 1064
Bst6I CTCTTC 2 cut(s) 324, 399
BstAUI TGTACA 1 cut(s) 918
BstC8I GCNNGC 2 cut(s) 198, 1122
BstDEI CTNAG 6 cut(s) 104, 264, 451, 702, 988, 1229
BstDSI CCRYGG 3 cut(s) 132, 585, 869
BstF5I GGATG 3 cut(s) 868, 1133, 1135
BstFNI CGCG 2 cut(s) 273, 857
BstHHI GCGC 1 cut(s) 202
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 8 cut(s) 97, 134, 143, 178, 202, 224, 307, 1130
BstNI CCWGG 2 cut(s) 552, 961
BstNSI RCATGY 2 cut(s) 580, 934
BstSCI CCNGG 4 cut(s) 33, 550, 644, 959
BstSLI GKGCMC 1 cut(s) 571
BstUI CGCG 2 cut(s) 273, 857
BstV1I GCAGC 4 cut(s) 84, 189, 890, 1177
BstV2I GAAGAC 2 cut(s) 182, 593
BstXI CCANNNNNNTGG 1 cut(s) 1081
BstZI CGGCCG 1 cut(s) 184
BtgI CCRYGG 3 cut(s) 132, 585, 869
BtgZI GCGATG 2 cut(s) 677, 872
BtsCI GGATG 3 cut(s) 868, 1133, 1135
BtsIMutI CAGTG 5 cut(s) 253, 402, 416, 425, 928
Cac8I GCNNGC 2 cut(s) 198, 1122
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 5 cut(s) 108, 238, 258, 866, 1274
CseI GACGC 2 cut(s) 262, 328
Csp6I GTAC 7 cut(s) 212, 384, 527, 574, 716, 791, 919
CviAII CATG 7 cut(s) 88, 298, 499, 577, 586, 870, 931
CviQI GTAC 7 cut(s) 212, 384, 527, 574, 716, 791, 919
DdeI CTNAG 6 cut(s) 104, 264, 451, 702, 988, 1229
DraI TTTAAA 1 cut(s) 46
EaeI YGGCCR 6 cut(s) 184, 406, 595, 806, 1071, 1118
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 2 cut(s) 324, 399
EarI CTCTTC 2 cut(s) 324, 399
EciI GGCGGA 1 cut(s) 149
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 7 cut(s) 118, 556, 585, 650, 869, 1125, 1194
Eco24I GRGCYC 2 cut(s) 472, 703
Eco47I GGWCC 3 cut(s) 108, 238, 258
Eco52I CGGCCG 1 cut(s) 184
Eco57I CTGAAG 2 cut(s) 176, 905
EcoO109I RGGNCCY 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 839
EcoRII CCWGG 2 cut(s) 550, 959
EcoT14I CCWWGG 7 cut(s) 118, 556, 585, 650, 869, 1125, 1194
EcoT22I ATGCAT 1 cut(s) 1135
EcoT38I GRGCYC 2 cut(s) 472, 703
ErhI CCWWGG 7 cut(s) 118, 556, 585, 650, 869, 1125, 1194
FaeI CATG 7 cut(s) 91, 301, 502, 580, 589, 873, 934
FaqI GGGAC 2 cut(s) 224, 662
FatI CATG 7 cut(s) 87, 297, 498, 576, 585, 869, 930
FauNDI CATATG 1 cut(s) 998
FblI GTMKAC 3 cut(s) 150, 1059, 1177
Fnu4HI GCNGC 7 cut(s) 98, 101, 129, 203, 357, 904, 1191
FokI GGATG 3 cut(s) 875, 1120, 1142
FriOI GRGCYC 2 cut(s) 472, 703
Fsp4HI GCNGC 7 cut(s) 98, 101, 129, 203, 357, 904, 1191
FspBI CTAG 2 cut(s) 563, 935
GlaI GCGC 1 cut(s) 201
GluI GCNGC 7 cut(s) 98, 101, 129, 203, 357, 904, 1191
GsaI CCCAGC 1 cut(s) 700
GsuI CTGGAG 2 cut(s) 11, 915
HapII CCGG 4 cut(s) 35, 111, 646, 805
HgaI GACGC 2 cut(s) 262, 328
HhaI GCGC 1 cut(s) 202
Hin1II CATG 7 cut(s) 91, 301, 502, 580, 589, 873, 934
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 3 cut(s) 151, 1178, 1353
HindII GTYRAC 3 cut(s) 151, 1178, 1353
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 6 cut(s) 123, 536, 731, 1086, 1168, 1179
HpaII CCGG 4 cut(s) 35, 111, 646, 805
HphI GGTGA 6 cut(s) 73, 343, 574, 1037, 1174, 1318
Hpy166II GTNNAC 8 cut(s) 151, 569, 582, 919, 926, 1060, 1178, 1353
Hpy188I TCNGA 3 cut(s) 265, 705, 730
Hpy188III TCNNGA 4 cut(s) 398, 746, 1137, 1253
Hpy8I GTNNAC 8 cut(s) 151, 569, 582, 919, 926, 1060, 1178, 1353
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 295, 690, 1100
HpyCH4III ACNGT 8 cut(s) 211, 380, 531, 573, 631, 676, 923, 1064
HpyCH4IV ACGT 2 cut(s) 1042, 1349
HpyCH4V TGCA 7 cut(s) 205, 487, 569, 906, 1022, 1133, 1154
HpyF10VI GCNNNNNNNGC 8 cut(s) 97, 134, 143, 178, 202, 224, 307, 1130
HpyF3I CTNAG 6 cut(s) 104, 264, 451, 702, 988, 1229
HpySE526I ACGT 2 cut(s) 1042, 1349
Hsp92II CATG 7 cut(s) 91, 301, 502, 580, 589, 873, 934
HspAI GCGC 1 cut(s) 200
KflI GGGWCCC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 2 cut(s) 36, 553
Lsp1109I GCAGC 4 cut(s) 84, 189, 890, 1177
LweI GCATC 3 cut(s) 496, 1120, 1142
MaeI CTAG 2 cut(s) 563, 935
MaeII ACGT 2 cut(s) 1042, 1349
MaeIII GTNAC 4 cut(s) 349, 1002, 1043, 1315
MboII GAAGA 9 cut(s) 182, 311, 386, 593, 596, 898, 1111, 1177, 1328
MhlI GDGCHC 4 cut(s) 472, 571, 703, 1283
MlsI TGGCCA 3 cut(s) 408, 1073, 1120
MluCI AATT 3 cut(s) 749, 839, 877
MluNI TGGCCA 3 cut(s) 408, 1073, 1120
MlyI GAGTC 2 cut(s) 530, 1173
Mox20I TGGCCA 3 cut(s) 408, 1073, 1120
Mph1103I ATGCAT 1 cut(s) 1135
MscI TGGCCA 3 cut(s) 408, 1073, 1120
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 3 cut(s) 86, 1079, 1286
Msp20I TGGCCA 3 cut(s) 408, 1073, 1120
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 4 cut(s) 35, 111, 646, 805
MspR9I CCNGG 4 cut(s) 35, 552, 646, 961
Mva1269I GAATGC 2 cut(s) 895, 1015
MvaI CCWGG 2 cut(s) 552, 961
MvnI CGCG 2 cut(s) 273, 857
MwoI GCNNNNNNNGC 8 cut(s) 97, 134, 143, 178, 202, 224, 307, 1130
NciI CCSGG 2 cut(s) 35, 646
NcoI CCATGG 2 cut(s) 585, 869
NdeI CATATG 1 cut(s) 998
NlaIII CATG 7 cut(s) 91, 301, 502, 580, 589, 873, 934
NlaIV GGNNCC 3 cut(s) 239, 240, 295
NmeAIII GCCGAG 2 cut(s) 342, 1302
NmuCI GTSAC 2 cut(s) 349, 1043
NsiI ATGCAT 1 cut(s) 1135
NspI RCATGY 2 cut(s) 580, 934
PciI ACATGT 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 324
PctI GAATGC 2 cut(s) 895, 1015
PfeI GAWTC 4 cut(s) 123, 731, 1086, 1168
PflFI GACNNNGTC 1 cut(s) 1064
PflMI CCANNNNNTGG 1 cut(s) 404
PkrI GCNGC 7 cut(s) 99, 102, 130, 204, 358, 905, 1192
PleI GAGTC 2 cut(s) 530, 1173
PpsI GAGTC 2 cut(s) 530, 1173
PpuMI RGGWCCY 1 cut(s) 238
PscI ACATGT 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 550, 959
PspFI CCCAGC 1 cut(s) 696
PspGI CCWGG 2 cut(s) 550, 959
PspN4I GGNNCC 3 cut(s) 239, 240, 295
PspPI GGNCC 5 cut(s) 108, 238, 258, 866, 1274
PspPPI RGGWCCY 1 cut(s) 238
PsrI GAACNNNNNNTAC 2 cut(s) 615, 647
PstNI CAGNNNCTG 1 cut(s) 404
PsyI GACNNNGTC 1 cut(s) 1064
RsaI GTAC 7 cut(s) 213, 385, 528, 575, 717, 792, 920
RsaNI GTAC 7 cut(s) 212, 384, 527, 574, 716, 791, 919
RseI CAYNNNNRTG 3 cut(s) 86, 1079, 1286
SalI GTCGAC 2 cut(s) 149, 1176
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 7 cut(s) 98, 101, 129, 203, 357, 904, 1191
Sau96I GGNCC 5 cut(s) 108, 238, 258, 866, 1274
ScaI AGTACT 1 cut(s) 792
SchI GAGTC 2 cut(s) 530, 1173
ScrFI CCNGG 4 cut(s) 35, 552, 646, 961
SduI GDGCHC 4 cut(s) 472, 571, 703, 1283
SfaNI GCATC 3 cut(s) 496, 1120, 1142
SinI GGWCC 3 cut(s) 108, 238, 258
SmiMI CAYNNNNRTG 3 cut(s) 86, 1079, 1286
SmlI CTYRAG 1 cut(s) 1160
SmoI CTYRAG 1 cut(s) 1160
Sse9I AATT 3 cut(s) 749, 839, 877
SspI AATATT 1 cut(s) 462
SspMI CTAG 2 cut(s) 563, 935
StyD4I CCNGG 4 cut(s) 33, 550, 644, 959
StyI CCWWGG 7 cut(s) 118, 556, 585, 650, 869, 1125, 1194
TaaI ACNGT 8 cut(s) 211, 380, 531, 573, 631, 676, 923, 1064
TaiI ACGT 2 cut(s) 1045, 1352
TaqI TCGA 3 cut(s) 150, 820, 1177
TasI AATT 3 cut(s) 749, 839, 877
TatI WGTACW 2 cut(s) 790, 918
TauI GCSGC 3 cut(s) 103, 131, 359
TfiI GAWTC 4 cut(s) 123, 731, 1086, 1168
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 5 cut(s) 260, 409, 416, 432, 928
TseFI GTSAC 2 cut(s) 349, 1043
TseI GCWGC 4 cut(s) 97, 202, 903, 1190
Tsp45I GTSAC 2 cut(s) 349, 1043
TspDTI ATGAA 3 cut(s) 277, 672, 1227
TspGWI ACGGA 2 cut(s) 514, 980
TspRI CASTG 5 cut(s) 260, 409, 416, 432, 928
Tth111I GACNNNGTC 1 cut(s) 1064
Van91I CCANNNNNTGG 1 cut(s) 404
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 3 cut(s) 108, 238, 258
XapI RAATTY 1 cut(s) 839
XceI RCATGY 2 cut(s) 580, 934
XmiI GTMKAC 3 cut(s) 150, 1059, 1177
XspI CTAG 2 cut(s) 563, 935
ZrmI AGTACT 1 cut(s) 792
Zsp2I ATGCAT 1 cut(s) 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.