Rorug06G0088200
ERF Family

PAP2 superfamily C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016141
Physical Location & Seq
Forward (+)
11760639 .. 11763424
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0088200.1

Sequence Viewer

Length: 852 bp
ATGGTGCAGATAGTAGTGGACCCTCTGCTTGTTCGTTTCCTTCGACCACATCAAAGAGAAGGGGTTCAATTCATGTTTGATTGTGTTGCGGGCTTAAATAGTGCTGCAAATATACATGGATGTATTCTTGCAGATGATATGGGGTTGGGAAAGACATTGCAGTCAATCACATTACTTTATACCCTTCTTTACCAAGGGTTTGATGGGAAATCAATGGTTAAAAAGGCCATTATAGTCACTCCCACCAGTCTTGTGAGCAATTGGGAGGCTCCGATAAAGAAGTGGGTCGGAGACAGAGTTTGCCTCATTGCTCTGTGTGAAAGTACCAGAGATGATGTTGTTTCTGGAATTGATCAGTTCACAAGTGCTCGCAGCCGTTTGCAGTTTATACTGCGGAGGACTAATGCACTACTTTCAAATCACCTGCCACTAAAGATAATTGAAGTTGTCTGTTGCAAGTTGACTCCTCTCCAATTAGACCTTTATAACCATTTTATACATTCTAAAAATGTTAAACGAGCAATCTCAGAAGACACAAAGCAAACAAAAATATTAGCTTATATAACTGCTCTAAAGAAGCTGTGCAATCATCCAAAGCTCATCTATGATACTATAAAAAGTGGAAATCCAGGAAGTTCAAGTTTTGAGGACTGCATTCGCTTTTTCCCTCCACAGATGTTCTCTGGAAGATCTGGATCATGGATTGGTGGAGATGGGGCTTGGGTTGAACTGTCAGGAAAGATGCATGTTTTAGCTCGGTTACTTGCCCAATTACGGAAGAAGACTGATGACCGTATTGTCCTTGTCTCAAACTATACGCATGTAATGTTGTGCAATGATTCTAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2_C

Protein Analysis

283

Amino Acids

31.72

Weight (kDa)

9.29

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 17 - 100 5.8e-20 SNF2-related domain
SNF2-rel_dom PF00176 128 - 200 1e-11 SNF2-related domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43580
fragaria_vesca FvH4_2g13470
malus_domestica MD05G1027600.v1.1 MD10G1028400.v1.1
prunus_persica Prupe.8G033400_v2.0.a1
pyrus_communis pycom05g01970 pycom10g01840
rosa_chinensis RchiOBHm_Chr6g0275101
rosa_laevigata RLG00000013497
rosa_multiflora Rmu_sc0000447.1_g000026 Rmu_sc0010802.1_g000002
rosa_roxburghii Rroxscaffold_7G00193630
rosa_rugosa Rorug06G0088200
rosa_samantha Rh6BG205800
rosa_wichuraiana Rw6G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
AarI CACCTGC 1 cut(s) 432
AasI GACNNNNNNGTC 2 cut(s) 160, 797
Acc36I ACCTGC 1 cut(s) 432
AciI CCGC 2 cut(s) 89, 394
AclWI GGATC 1 cut(s) 703
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 774
AgsI TTSAA 5 cut(s) 68, 417, 443, 639, 728
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 4 cut(s) 557, 580, 598, 755
AluI AGCT 4 cut(s) 557, 580, 598, 755
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 285, 811
AlwI GGATC 1 cut(s) 703
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 104, 372
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 413
AvaII GGWCC 1 cut(s) 19
BbsI GAAGAC 2 cut(s) 537, 788
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 91, 384
BccI CCATC 2 cut(s) 197, 707
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 1 cut(s) 630
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 285, 811
BfaI CTAG 1 cut(s) 843
BfuAI ACCTGC 1 cut(s) 432
BglII AGATCT 1 cut(s) 689
BisI GCNGC 2 cut(s) 105, 373
BlsI GCNGC 2 cut(s) 106, 374
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 2 cut(s) 21, 270
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 1 cut(s) 732
BpiI GAAGAC 2 cut(s) 537, 788
BplI GAGNNNNNCTC 2 cut(s) 288, 320
BsaBI GATNNNNATC 1 cut(s) 694
BsaJI CCNNGG 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 774
Bse1I ACTGG 1 cut(s) 246
Bse3DI GCAATG 3 cut(s) 155, 306, 841
Bse8I GATNNNNATC 1 cut(s) 694
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 125, 589
BseJI GATNNNNATC 1 cut(s) 694
BseLI CCNNNNNNNGG 1 cut(s) 774
BseMI GCAATG 3 cut(s) 155, 306, 841
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 2 cut(s) 91, 384
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 774
BsmAI GTCTC 2 cut(s) 285, 811
BsmI GAATGC 1 cut(s) 654
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 3 cut(s) 352, 689, 695
BspACI CCGC 2 cut(s) 89, 394
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 539
BspLI GGNNCC 2 cut(s) 21, 270
BspMI ACCTGC 1 cut(s) 432
BspPI GGATC 1 cut(s) 703
BsrDI GCAATG 3 cut(s) 155, 306, 841
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 3 cut(s) 352, 689, 695
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 732, 794
BstC8I GCNNGC 2 cut(s) 91, 370
BstDEI CTNAG 1 cut(s) 526
BstF5I GGATG 2 cut(s) 125, 589
BstKTI GATC 3 cut(s) 355, 692, 698
BstMAI GTCTC 2 cut(s) 285, 811
BstMBI GATC 3 cut(s) 352, 689, 695
BstNI CCWGG 1 cut(s) 630
BstNSI RCATGY 2 cut(s) 749, 824
BstSCI CCNGG 1 cut(s) 628
BstV1I GCAGC 2 cut(s) 91, 384
BstV2I GAAGAC 2 cut(s) 537, 788
BstX2I RGATCY 1 cut(s) 689
BstYI RGATCY 1 cut(s) 689
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 2 cut(s) 125, 589
BveI ACCTGC 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 91, 370
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 324
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 5 cut(s) 73, 116, 699, 746, 821
CviJI RGCY 9 cut(s) 93, 227, 269, 375, 557, 580, 598, 719, 755
CviKI_1 RGCY 9 cut(s) 93, 227, 269, 375, 557, 580, 598, 719, 755
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 526
DpnI GATC 3 cut(s) 354, 691, 697
DpnII GATC 3 cut(s) 352, 689, 695
DrdI GACNNNNNNGTC 2 cut(s) 160, 797
DseDI GACNNNNNNGTC 2 cut(s) 160, 797
Eco130I CCWWGG 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 747
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 5 cut(s) 76, 119, 702, 749, 824
FatI CATG 5 cut(s) 72, 115, 698, 745, 820
FauI CCCGC 1 cut(s) 82
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 105, 373
FokI GGATG 2 cut(s) 132, 576
Fsp4HI GCNGC 2 cut(s) 105, 373
FspBI CTAG 1 cut(s) 843
GluI GCNGC 2 cut(s) 105, 373
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 5 cut(s) 76, 119, 702, 749, 824
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 2 cut(s) 463, 839
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 3 cut(s) 19, 360, 462
Hpy188I TCNGA 3 cut(s) 273, 290, 529
Hpy188III TCNNGA 5 cut(s) 345, 684, 693, 735, 843
Hpy8I GTNNAC 3 cut(s) 19, 360, 462
HpyAV CCTTC 3 cut(s) 50, 53, 194
HpyCH4III ACNGT 2 cut(s) 732, 794
HpyF3I CTNAG 1 cut(s) 526
Hsp92II CATG 5 cut(s) 76, 119, 702, 749, 824
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 3 cut(s) 352, 689, 695
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 9 cut(s) 259, 330, 340, 437, 615, 642, 669, 678, 720
Lsp1109I GCAGC 2 cut(s) 91, 384
LweI GCATC 1 cut(s) 732
MaeI CTAG 1 cut(s) 843
MaeIII GTNAC 2 cut(s) 235, 759
MalI GATC 3 cut(s) 354, 691, 697
MboI GATC 3 cut(s) 352, 689, 695
MboII GAAGA 4 cut(s) 542, 699, 790, 793
MfeI CAATTG 1 cut(s) 259
MflI RGATCY 1 cut(s) 689
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 6 cut(s) 68, 259, 348, 438, 473, 770
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 7 cut(s) 33, 259, 314, 390, 477, 640, 678
Mph1103I ATGCAT 1 cut(s) 747
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 3 cut(s) 95, 219, 513
MspR9I CCNGG 1 cut(s) 630
MunI CAATTG 1 cut(s) 259
Mva1269I GAATGC 1 cut(s) 654
MvaI CCWGG 1 cut(s) 630
NdeII GATC 3 cut(s) 352, 689, 695
NlaIII CATG 5 cut(s) 76, 119, 702, 749, 824
NlaIV GGNNCC 2 cut(s) 21, 270
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 747
NspI RCATGY 2 cut(s) 749, 824
PaqCI CACCTGC 1 cut(s) 432
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PctI GAATGC 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 839
PfoI TCCNGGA 1 cut(s) 628
PkrI GCNGC 2 cut(s) 106, 374
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PsiI TTATAA 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 2 cut(s) 21, 270
PspPI GGNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 689
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 95, 219, 513
SatI GCNGC 2 cut(s) 105, 373
Sau3AI GATC 3 cut(s) 352, 689, 695
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 630
SduI GDGCHC 1 cut(s) 370
SetI ASST 6 cut(s) 426, 483, 559, 582, 600, 757
SfaNI GCATC 1 cut(s) 732
SinI GGWCC 1 cut(s) 19
Sse9I AATT 6 cut(s) 68, 259, 348, 438, 473, 770
SsiI CCGC 2 cut(s) 89, 394
SspI AATATT 1 cut(s) 552
SspMI CTAG 1 cut(s) 843
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 732, 794
TaqI TCGA 1 cut(s) 43
TasI AATT 6 cut(s) 68, 259, 348, 438, 473, 770
TfiI GAWTC 1 cut(s) 839
Tru1I TTAA 3 cut(s) 95, 219, 513
Tru9I TTAA 3 cut(s) 95, 219, 513
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 2 cut(s) 104, 372
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 19
XbaI TCTAGA 1 cut(s) 842
XceI RCATGY 2 cut(s) 749, 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 843
Zsp2I ATGCAT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.