Prupe.8G033400_v2.0.a1
ERF Family

PAP2 superfamily C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016141
Physical Location & Seq
Forward (+)
3109801 .. 3114976
5176 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G033400.1

Sequence Viewer

Length: 1410 bp
ATGAAAACAAAACAACTAACTATAGTTTATATTGTTGGAATGTTCAAACGCCTATGTCCCAGCCTTCCCTACCTCCCAGTTTCCTCGAAACCAAACTCATCAGCATCAACTCACTCCTTCGCTTTCACCACCATGTGGTGGCCGCCGAGGTCCGGCGGCCTTGGAATCGCCGCCATCGCCTATGTGGTAGTTGACTACATCCGCCACTTGTCGCCTGCGTGGCACGGCCGTCTTCAGCCAGCTCTCTTGTCCGGATTCGCTCTCATTGCCGTCAGTCGCGTGCCCTTCTACAAGCACTGGTCCTCTGAGTTTCGCTCCGTCTTTCCCTTTATTGGTTCTATGCTCTTTATGCTCTTAGCTCTTCTCTTTGAAGCTCTCTGCGTTCGATTTGTCACCGCTGCCCTCGGCCTTGATTGGAACAGTCATACATCTCCTCTTCCCGACACTGGCCAGTGGTTTCTTTTGGCGCTGAATGAGAAGCTTCCTCATCCATTAGTTGAAATATTGAGAGCCCGTATTATTGGACTGCACCATTTCCTCATGTTGTTTGTGATGTTGGCTTTTTCCGTACTGTTTGACTCTGTGAAAGCTCCTGGCCTTGGACTAGGTGCACGCTATATGTTCACCATGGCTATTGGCCGCCTTCTTCGTGCCATAACTTTTGTATCAACAGTTCTGCCATCAGCCCGGCCTTGGTGTGCTACTGCTCGTTTCAATGTCCCTTTATATCCTCATCGCTGGGCTCAGAAATATTATGCTCCTTACGCTTCGGATGCTAATGCTATTCGTGAGTTGCTACGACAGGATATAGCTTTCGCTGATACTGGAAAATTACTTGGGGACTTCCGGCCAGATTGGGGTCCAATGAGCTTCCTAATAGATTTCTTGCGACCCAGTGAATCGGATGGACCATGGTATAATTTACTGAAGAATGCTGGAGGCGGCTGCAATGACCTCGTGTACAGTGGGCATATGCTAGTTGCTGTGTTGACAGCTATGGCTTGGACGGAAGCTTATGGTGGTTTTAGCTCAGTTCTCATATGGTCACTTGTCGGGCATGCTGCACAGAGAGAAATACGGGAACGTCACCATTATAGTGTAGATTGTGTTGTGGCCATTTATGTAGGAATCCTGCTATGGAAGATGACAGGTTTTTTGTGGCCATCCAAGGATGCATCCAGAGATAGGAGGATCACAATGCTTGAGAAGATTCAAAGTCGACTTACCCAAGCTGCTAAGGACTACGACATAGATGAAGTGAGAGAGCTTCTCAGAGGGGTTGAGTTGGGAAGTCAAGAGAGCCTGAGTAATAAAGGGCCAAGCACGGGTATGTGGATATTTGCTTGTGCTATCATAATCACTGCAATTGTCATTGTTGTTCTCGCCTTGACATTGACAAGCGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2_C

Protein Analysis

470

Amino Acids

52.41

Weight (kDa)

9.28

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43580
fragaria_vesca FvH4_2g13470
malus_domestica MD05G1027600.v1.1 MD10G1028400.v1.1
prunus_persica Prupe.8G033400_v2.0.a1
pyrus_communis pycom05g01970 pycom10g01840
rosa_chinensis RchiOBHm_Chr6g0275101
rosa_laevigata RLG00000013497
rosa_multiflora Rmu_sc0000447.1_g000026 Rmu_sc0010802.1_g000002
rosa_roxburghii Rroxscaffold_7G00193630
rosa_rugosa Rorug06G0088200
rosa_samantha Rh6BG205800
rosa_wichuraiana Rw6G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 135, 138
AccI GTMKAC 1 cut(s) 1219
AccII CGCG 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 7 cut(s) 143, 156, 171, 202, 396, 640, 942
AclWI GGATC 1 cut(s) 1199
AcoI YGGCCR 7 cut(s) 140, 226, 448, 637, 848, 1113, 1160
AcuI CTGAAG 2 cut(s) 218, 947
AdeI CACNNNGTG 1 cut(s) 135
AfaI GTAC 2 cut(s) 570, 962
AgsI TTSAA 5 cut(s) 46, 371, 500, 715, 1214
AjnI CCWGG 1 cut(s) 592
Alw21I GWGCWC 1 cut(s) 613
Alw44I GTGCAC 1 cut(s) 609
AlwI GGATC 1 cut(s) 1199
Aor13HI TCCGGA 1 cut(s) 251
ApaLI GTGCAC 1 cut(s) 609
ApeKI GCWGC 4 cut(s) 398, 945, 1061, 1232
ArsI GACNNNNNNTTYG 2 cut(s) 1138, 1170
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 5 cut(s) 150, 300, 860, 908, 1316
AsuC2I CCSGG 1 cut(s) 688
AsuHPI GGTGA 4 cut(s) 118, 385, 616, 1079
AvaII GGWCC 4 cut(s) 150, 300, 860, 908
BaeGI GKGCMC 2 cut(s) 285, 613
BaeI ACNNNNGTAYC 2 cut(s) 648, 681
BalI TGGCCA 3 cut(s) 450, 1115, 1162
BanII GRGCYC 2 cut(s) 514, 745
BauI CACGAG 1 cut(s) 956
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 4 cut(s) 385, 932, 1048, 1219
BccI CCATC 5 cut(s) 182, 688, 899, 1171, 1397
BceAI ACGGC 3 cut(s) 213, 241, 254
BcgI CGANNNNNNTGC 2 cut(s) 937, 971
BciT130I CCWGG 1 cut(s) 594
BcnI CCSGG 1 cut(s) 688
BfaI CTAG 2 cut(s) 605, 977
BfmI CTRYAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 470
BglI GCCNNNNNGGC 1 cut(s) 220
BisI GCNGC 9 cut(s) 143, 157, 171, 399, 640, 943, 946, 1062, 1233
BlsI GCNGC 9 cut(s) 144, 158, 172, 400, 641, 944, 947, 1063, 1234
Bme1390I CCNGG 2 cut(s) 594, 688
Bme18I GGWCC 4 cut(s) 150, 300, 860, 908
BmgT120I GGNCC 5 cut(s) 150, 300, 860, 908, 1316
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 2 cut(s) 594, 688
BmrI ACTGGG 2 cut(s) 71, 888
BmsI GCATC 4 cut(s) 113, 763, 1162, 1184
BmuI ACTGGG 2 cut(s) 71, 888
BpiI GAAGAC 1 cut(s) 224
BplI GAGNNNNNCTC 4 cut(s) 299, 331, 1254, 1286
BpmI CTGGAG 1 cut(s) 957
Bpu10I CCTNAGC 1 cut(s) 1236
BpuEI CTTGAG 1 cut(s) 1223
BpuMI CCSGG 1 cut(s) 688
BsaJI CCNNGG 8 cut(s) 146, 160, 403, 598, 627, 692, 911, 1167
BsaWI WCCGGW 1 cut(s) 251
Bse1I ACTGG 6 cut(s) 77, 302, 451, 451, 829, 894
Bse3DI GCAATG 2 cut(s) 264, 955
BseAI TCCGGA 1 cut(s) 251
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 8 cut(s) 146, 160, 403, 598, 627, 692, 911, 1167
BseGI GGATG 7 cut(s) 198, 487, 778, 910, 1163, 1175, 1177
BseMI GCAATG 2 cut(s) 264, 955
BseMII CTCAG 5 cut(s) 297, 758, 1044, 1285, 1295
BseNI ACTGG 6 cut(s) 77, 302, 451, 451, 829, 894
BseRI GAGGAG 1 cut(s) 423
BseSI GKGCMC 2 cut(s) 285, 613
BseX3I CGGCCG 1 cut(s) 226
BseXI GCAGC 4 cut(s) 385, 932, 1048, 1219
BseYI CCCAGC 2 cut(s) 59, 738
BsgI GTGCAG 2 cut(s) 512, 1047
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 229
BsiEI CGRYCG 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 613
BsiSI CCGG 4 cut(s) 153, 252, 688, 847
BslFI GGGAC 3 cut(s) 42, 704, 854
BsmFI GGGAC 3 cut(s) 42, 704, 854
BsmI GAATGC 1 cut(s) 937
Bsp1286I GDGCHC 4 cut(s) 285, 514, 613, 745
Bsp13I TCCGGA 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 960
Bsp143I GATC 1 cut(s) 1191
Bsp19I CCATGG 2 cut(s) 627, 911
BspACI CCGC 7 cut(s) 143, 156, 171, 202, 396, 640, 942
BspCNI CTCAG 5 cut(s) 298, 757, 1043, 1284, 1296
BspEI TCCGGA 1 cut(s) 251
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 861
BspPI GGATC 1 cut(s) 1199
BspQI GCTCTTC 1 cut(s) 366
BsrDI GCAATG 2 cut(s) 264, 955
BsrGI TGTACA 1 cut(s) 960
BsrI ACTGG 6 cut(s) 77, 302, 451, 451, 829, 894
BssECI CCNNGG 8 cut(s) 146, 160, 403, 598, 627, 692, 911, 1167
BssMI GATC 1 cut(s) 1191
BssSI CACGAG 1 cut(s) 956
BssT1I CCWWGG 6 cut(s) 160, 598, 627, 692, 911, 1167
Bst2BI CACGAG 1 cut(s) 956
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 4 cut(s) 422, 573, 673, 965
Bst6I CTCTTC 2 cut(s) 366, 441
BstAUI TGTACA 1 cut(s) 960
BstC8I GCNNGC 5 cut(s) 216, 240, 281, 613, 1059
BstDEI CTNAG 7 cut(s) 306, 355, 744, 1030, 1236, 1271, 1304
BstDSI CCRYGG 2 cut(s) 627, 911
BstF5I GGATG 7 cut(s) 198, 487, 778, 910, 1163, 1175, 1177
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 1 cut(s) 1194
BstMBI GATC 1 cut(s) 1191
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 6 cut(s) 176, 220, 266, 349, 764, 773
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 1061
BstSCI CCNGG 2 cut(s) 592, 686
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 2 cut(s) 285, 613
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 4 cut(s) 385, 932, 1048, 1219
BstV2I GAAGAC 1 cut(s) 224
BstZI CGGCCG 1 cut(s) 226
BtgI CCRYGG 2 cut(s) 627, 911
BtgZI GCGATG 2 cut(s) 160, 719
BtsCI GGATG 7 cut(s) 198, 487, 778, 910, 1163, 1175, 1177
BtsI GCAGTG 1 cut(s) 1359
BtsIMutI CAGTG 6 cut(s) 295, 444, 458, 901, 970, 1359
Cac8I GCNNGC 5 cut(s) 216, 240, 281, 613, 1059
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 5 cut(s) 150, 300, 860, 908, 1316
Csp6I GTAC 2 cut(s) 569, 961
CviAII CATG 5 cut(s) 133, 541, 628, 912, 1058
CviQI GTAC 2 cut(s) 569, 961
DdeI CTNAG 7 cut(s) 306, 355, 744, 1030, 1236, 1271, 1304
DpnI GATC 1 cut(s) 1193
DpnII GATC 1 cut(s) 1191
DraIII CACNNNGTG 1 cut(s) 135
EaeI YGGCCR 7 cut(s) 140, 226, 448, 637, 848, 1113, 1160
EagI CGGCCG 1 cut(s) 226
Eam1104I CTCTTC 2 cut(s) 366, 441
EarI CTCTTC 2 cut(s) 366, 441
EciI GGCGGA 1 cut(s) 191
EclXI CGGCCG 1 cut(s) 226
Eco130I CCWWGG 6 cut(s) 160, 598, 627, 692, 911, 1167
Eco24I GRGCYC 2 cut(s) 514, 745
Eco47I GGWCC 4 cut(s) 150, 300, 860, 908
Eco52I CGGCCG 1 cut(s) 226
Eco57I CTGAAG 2 cut(s) 218, 947
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 6 cut(s) 160, 598, 627, 692, 911, 1167
EcoT22I ATGCAT 1 cut(s) 1177
EcoT38I GRGCYC 2 cut(s) 514, 745
ErhI CCWWGG 6 cut(s) 160, 598, 627, 692, 911, 1167
FaeI CATG 5 cut(s) 136, 544, 631, 915, 1061
FaqI GGGAC 3 cut(s) 42, 704, 854
FatI CATG 5 cut(s) 132, 540, 627, 911, 1057
FauNDI CATATG 2 cut(s) 972, 1040
FblI GTMKAC 1 cut(s) 1219
Fnu4HI GCNGC 9 cut(s) 143, 157, 171, 399, 640, 943, 946, 1062, 1233
FokI GGATG 7 cut(s) 185, 474, 785, 917, 1150, 1162, 1184
FriOI GRGCYC 2 cut(s) 514, 745
Fsp4HI GCNGC 9 cut(s) 143, 157, 171, 399, 640, 943, 946, 1062, 1233
FspBI CTAG 2 cut(s) 605, 977
GlaI GCGC 1 cut(s) 468
GluI GCNGC 9 cut(s) 143, 157, 171, 399, 640, 943, 946, 1062, 1233
GsaI CCCAGC 2 cut(s) 63, 742
GsuI CTGGAG 1 cut(s) 957
HaeII RGCGCY 1 cut(s) 470
HapII CCGG 4 cut(s) 153, 252, 688, 847
HhaI GCGC 1 cut(s) 469
Hin1II CATG 5 cut(s) 136, 544, 631, 915, 1061
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 3 cut(s) 193, 990, 1220
HindII GTYRAC 3 cut(s) 193, 990, 1220
HindIII AAGCTT 2 cut(s) 479, 1011
HinfI GANTC 6 cut(s) 165, 255, 578, 899, 1128, 1210
HpaII CCGG 4 cut(s) 153, 252, 688, 847
HphI GGTGA 4 cut(s) 118, 385, 616, 1079
Hpy166II GTNNAC 6 cut(s) 193, 611, 624, 961, 990, 1220
Hpy188I TCNGA 5 cut(s) 307, 747, 772, 904, 1274
Hpy188III TCNNGA 5 cut(s) 252, 440, 788, 1179, 1295
Hpy8I GTNNAC 6 cut(s) 193, 611, 624, 961, 990, 1220
HpyAV CCTTC 4 cut(s) 74, 127, 295, 653
HpyCH4III ACNGT 4 cut(s) 422, 573, 673, 965
HpyCH4IV ACGT 1 cut(s) 1084
HpyCH4V TGCA 6 cut(s) 529, 611, 948, 1064, 1175, 1364
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 220, 266, 349, 764, 773
HpyF3I CTNAG 7 cut(s) 306, 355, 744, 1030, 1236, 1271, 1304
HpySE526I ACGT 1 cut(s) 1084
Hsp92II CATG 5 cut(s) 136, 544, 631, 915, 1061
HspAI GCGC 1 cut(s) 467
Kpn2I TCCGGA 1 cut(s) 251
Kzo9I GATC 1 cut(s) 1191
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 3 cut(s) 320, 595, 763
Lsp1109I GCAGC 4 cut(s) 385, 932, 1048, 1219
LweI GCATC 4 cut(s) 113, 763, 1162, 1184
MaeI CTAG 2 cut(s) 605, 977
MaeII ACGT 1 cut(s) 1084
MaeIII GTNAC 3 cut(s) 391, 1044, 1085
MalI GATC 1 cut(s) 1193
MboI GATC 1 cut(s) 1191
MboII GAAGA 7 cut(s) 224, 353, 428, 638, 940, 1153, 1219
MfeI CAATTG 1 cut(s) 1365
MhlI GDGCHC 4 cut(s) 285, 514, 613, 745
MlsI TGGCCA 3 cut(s) 450, 1115, 1162
MluCI AATT 3 cut(s) 830, 919, 1365
MluNI TGGCCA 3 cut(s) 450, 1115, 1162
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 16
Mox20I TGGCCA 3 cut(s) 450, 1115, 1162
Mph1103I ATGCAT 1 cut(s) 1177
MroI TCCGGA 1 cut(s) 251
MscI TGGCCA 3 cut(s) 450, 1115, 1162
MslI CAYNNNNRTG 3 cut(s) 131, 1095, 1328
Msp20I TGGCCA 3 cut(s) 450, 1115, 1162
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 4 cut(s) 153, 252, 688, 847
MspR9I CCNGG 2 cut(s) 594, 688
MunI CAATTG 1 cut(s) 1365
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 6 cut(s) 176, 220, 266, 349, 764, 773
NciI CCSGG 1 cut(s) 688
NcoI CCATGG 2 cut(s) 627, 911
NdeI CATATG 2 cut(s) 972, 1040
NdeII GATC 1 cut(s) 1191
NlaIII CATG 5 cut(s) 136, 544, 631, 915, 1061
NlaIV GGNNCC 1 cut(s) 861
NmeAIII GCCGAG 2 cut(s) 171, 384
NmuCI GTSAC 3 cut(s) 391, 1044, 1085
NsiI ATGCAT 1 cut(s) 1177
NspI RCATGY 1 cut(s) 1061
PaeI GCATGC 1 cut(s) 1061
PciSI GCTCTTC 1 cut(s) 366
PctI GAATGC 1 cut(s) 937
PfeI GAWTC 5 cut(s) 165, 255, 899, 1128, 1210
PflMI CCANNNNNTGG 2 cut(s) 135, 138
PkrI GCNGC 9 cut(s) 144, 158, 172, 400, 641, 944, 947, 1063, 1234
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 592
PspFI CCCAGC 2 cut(s) 59, 738
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 1 cut(s) 861
PspPI GGNCC 5 cut(s) 150, 300, 860, 908, 1316
PsrI GAACNNNNNNTAC 2 cut(s) 657, 689
RsaI GTAC 2 cut(s) 570, 962
RsaNI GTAC 2 cut(s) 569, 961
RseI CAYNNNNRTG 3 cut(s) 131, 1095, 1328
SalI GTCGAC 1 cut(s) 1218
SapI GCTCTTC 1 cut(s) 366
SatI GCNGC 9 cut(s) 143, 157, 171, 399, 640, 943, 946, 1062, 1233
Sau3AI GATC 1 cut(s) 1191
Sau96I GGNCC 5 cut(s) 150, 300, 860, 908, 1316
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 2 cut(s) 594, 688
SduI GDGCHC 4 cut(s) 285, 514, 613, 745
SfaNI GCATC 4 cut(s) 113, 763, 1162, 1184
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 4 cut(s) 150, 300, 860, 908
SmiMI CAYNNNNRTG 3 cut(s) 131, 1095, 1328
SmlI CTYRAG 1 cut(s) 1202
SmoI CTYRAG 1 cut(s) 1202
SphI GCATGC 1 cut(s) 1061
Sse9I AATT 3 cut(s) 830, 919, 1365
SsiI CCGC 7 cut(s) 143, 156, 171, 202, 396, 640, 942
SspI AATATT 2 cut(s) 504, 752
SspMI CTAG 2 cut(s) 605, 977
StyD4I CCNGG 2 cut(s) 592, 686
StyI CCWWGG 6 cut(s) 160, 598, 627, 692, 911, 1167
TaaI ACNGT 4 cut(s) 422, 573, 673, 965
TaiI ACGT 1 cut(s) 1087
TaqI TCGA 3 cut(s) 86, 385, 1219
TasI AATT 3 cut(s) 830, 919, 1365
TatI WGTACW 1 cut(s) 960
TauI GCSGC 5 cut(s) 145, 159, 173, 642, 945
TfiI GAWTC 5 cut(s) 165, 255, 899, 1128, 1210
TscAI CASTG 6 cut(s) 302, 451, 458, 901, 970, 1366
TseFI GTSAC 3 cut(s) 391, 1044, 1085
TseI GCWGC 4 cut(s) 398, 945, 1061, 1232
Tsp45I GTSAC 3 cut(s) 391, 1044, 1085
TspDTI ATGAA 2 cut(s) 17, 1269
TspGWI ACGGA 3 cut(s) 307, 556, 1022
TspRI CASTG 6 cut(s) 302, 451, 458, 901, 970, 1366
Van91I CCANNNNNTGG 2 cut(s) 135, 138
VneI GTGCAC 1 cut(s) 609
VpaK11BI GGWCC 4 cut(s) 150, 300, 860, 908
XceI RCATGY 1 cut(s) 1061
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 1219
XspI CTAG 2 cut(s) 605, 977
Zsp2I ATGCAT 1 cut(s) 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.