AT1G47530

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17451553 .. 17454461
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47530.2

Sequence Viewer

Length: 1455 bp
ATGGGAAAGGATAAGACTTTGCCGTTGCTTGACCCTCGTGAGCCACCGGAACTCACCGGAACCAAGTCGGCGTCAAAAGTATGGGCCAAAGAGTTCGGCGAAGAGTCGAAGCGGCTTTGGGAGTTAGCAGGACCAGCGATTTTCACTGCCATAAGTCAATACTCTCTTGGTGCTCTCACTCAGACTTTCTCCGGCCGTCTCGGTGAACTTGAGCTCGCCGCCGTCTCAGTTGAAAACTCTGTTATCTCCGGTCTTGCCTTCGGTGTCATGTTAGGGATGGGGAGTGCATTGGAGACGTTGTGTGGACAAGCATATGGCGCGGGACAGATTAGGATGATGGGAATATATATGCAACGTTCATGGGTCATTCTCTTTACTACTGCTTTGTTTTTGCTTCCCGTCTACATTTGGGCTCCTCCTATTCTTTCCTTCTTCGGCGAGGCTCCTCACATCTCTAAAGCCGCGGGGAAGTTCGCATTGTGGATGATCCCGCAACTATTTGCCTATGCAGCCAACTTCCCGATACAGAAATTCTTGCAGTCACAGAGGAAAGTTCTTGTGATGGCTTGGATCTCTGGAGTGGTTTTAGTTATACATGCAGTTTTTAGCTGGCTCTTCATTCTTTACTTTAAGTGGGGACTTGTAGGTGCAGCTATCACTCTCAATACCTCGTGGTGGTTGATTGTTATTGGTCAGCTTTTGTATATCTTAATCACCAAATCAGACGGTGCGTGGACTGGATTTTCTATGCTAGCGTTTCGGGACCTCTATGGATTTGTCAAACTTTCCTTAGCCTCTGCTCTTATGCTTTGTTTGGAGTTTTGGTACTTGATGGTTCTGGTTGTTGTTACCGGTCTCCTTCCTAACCCGTTGATACCAGTCGATGCCATCTCCATTTGCATGAATATAGAAGGGTGGACTGCCATGATTTCGATCGGGTTTAACGCTGCGATTAGTGTGAGAGTATCGAATGAGCTGGGTGCAGGAAACGCAGCGTTAGCCAAATTCTCAGTGATAGTCGTCTCCATAACTTCAACTCTTATCGGGATAGTGTGCATGATTGTTGTCTTAGCCACAAAAGACAGCTTCCCTTATCTTTTCACTTCAAGCGAAGCTGTGGCAGCAGAAACCACGAGAATAGCCGTCTTGTTGGGCTTCACTGTCCTCTTGAACAGCCTCCAGCCCGTCTTGTCAGGGGTTGCGGTTGGAGCGGGGTGGCAGGCTCTGGTTGCATACGTGAACATTGCGTGTTATTACATTATCGGACTACCTGCTGGTCTTGTTCTTGGATTCACACTAGACCTCGGCGTTCAGGGAATATGGGGAGGTATGGTAGCTGGAATATGCTTGCAGACACTTATATTGATTGGAATCATCTACTTCACTAACTGGAACAAAGAGGCTGAGCAAGCGGAGAGTCGAGTTCAGAGATGGGGAGGAACGGCGCAGGAGTGA

Protein Analysis

484

Amino Acids

52.42

Weight (kDa)

6.75

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 1 - 113 6.1e-24 MatE
MatE PF01554 174 - 334 2e-25 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016632)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47530 AT1G47530
fragaria_vesca FvH4_2g40430
malus_domestica MD00G1039400.v1.1 MD08G1037600.v1.1
prunus_persica Prupe.1G384800_v2.0.a1
pyrus_communis pycom08g02990
rosa_chinensis RchiOBHm_Chr6g0300301
rosa_laevigata RLG00000011349
rosa_multiflora Rmu_sc0001670.1_g000023
rosa_roxburghii Rroxscaffold_7G00167910
rosa_rugosa Rorug06G0294800
rosa_samantha Rh6CG422300
rosa_wichuraiana Rw6G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1279
AccBSI CCGCTC 1 cut(s) 1211
AccI GTMKAC 1 cut(s) 402
AccII CGCG 2 cut(s) 320, 464
AciI CCGC 9 cut(s) 112, 219, 320, 462, 464, 491, 1202, 1211, 1412
AclI AACGTT 1 cut(s) 355
AclWI GGATC 2 cut(s) 481, 578
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 2 cut(s) 530, 1004
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 827
AfiI CCNNNNNNNGG 1 cut(s) 675
AgeI ACCGGT 1 cut(s) 851
AgsI TTSAA 4 cut(s) 233, 1035, 1107, 1171
AluBI AGCT 8 cut(s) 214, 609, 653, 697, 976, 1086, 1115, 1337
AluI AGCT 8 cut(s) 214, 609, 653, 697, 976, 1086, 1115, 1337
Alw21I GWGCWC 2 cut(s) 175, 216
Alw26I GTCTC 5 cut(s) 203, 229, 287, 860, 1027
AlwI GGATC 2 cut(s) 481, 578
AlwNI CAGNNNCTG 1 cut(s) 1225
AoxI GGCC 2 cut(s) 84, 193
ApeKI GCWGC 5 cut(s) 509, 650, 947, 992, 1121
ApoI RAATTY 2 cut(s) 530, 1004
AsiGI ACCGGT 1 cut(s) 851
AspLEI GCGC 2 cut(s) 320, 1447
AspS9I GGNCC 3 cut(s) 84, 131, 763
AsuHPI GGTGA 3 cut(s) 46, 215, 706
AsuNHI GCTAGC 1 cut(s) 751
AvaII GGWCC 2 cut(s) 131, 763
BanII GRGCYC 2 cut(s) 216, 415
BauI CACGAG 3 cut(s) 36, 670, 1132
Bbv12I GWGCWC 2 cut(s) 175, 216
BbvI GCAGC 5 cut(s) 521, 662, 934, 1004, 1133
BccI CCATC 6 cut(s) 271, 331, 556, 826, 896, 1425
BceAI ACGGC 4 cut(s) 7, 180, 206, 1127
BcoDI GTCTC 5 cut(s) 203, 229, 287, 860, 1027
BfaI CTAG 2 cut(s) 752, 1298
BfuAI ACCTGC 1 cut(s) 1279
BisI GCNGC 8 cut(s) 113, 219, 462, 510, 651, 948, 993, 1122
BlpI GCTNAGC 1 cut(s) 1404
BlsI GCNGC 8 cut(s) 114, 220, 463, 511, 652, 949, 994, 1123
Bme18I GGWCC 2 cut(s) 131, 763
BmgT120I GGNCC 3 cut(s) 84, 131, 763
BmiI GGNNCC 4 cut(s) 61, 414, 444, 764
BmsI GCATC 1 cut(s) 874
BmtI GCTAGC 1 cut(s) 755
BpmI CTGGAG 2 cut(s) 597, 1163
Bpu10I CCTNAGC 1 cut(s) 790
Bpu1102I GCTNAGC 1 cut(s) 1404
BpuEI CTTGAG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 1237
BsaBI GATNNNNATC 2 cut(s) 932, 1370
BsaHI GRCGYC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 860
BsaJI CCNNGG 2 cut(s) 462, 1303
BsaWI WCCGGW 4 cut(s) 46, 56, 248, 851
BsaXI ACNNNNNCTCC 6 cut(s) 284, 314, 809, 839, 1317, 1347
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 3 cut(s) 742, 878, 1394
Bse3DI GCAATG 1 cut(s) 1242
Bse8I GATNNNNATC 2 cut(s) 932, 1370
BseDI CCNNGG 2 cut(s) 462, 1303
BseGI GGATG 3 cut(s) 282, 339, 489
BseJI GATNNNNATC 2 cut(s) 932, 1370
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMI GCAATG 1 cut(s) 1242
BseMII CTCAG 4 cut(s) 194, 240, 1023, 1395
BseNI ACTGG 3 cut(s) 742, 878, 1394
BseRI GAGGAG 2 cut(s) 405, 435
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 5 cut(s) 521, 662, 934, 1004, 1133
BseYI CCCAGC 1 cut(s) 976
BsgI GTGCAG 2 cut(s) 669, 1002
Bsh1236I CGCG 2 cut(s) 320, 464
Bsh1285I CGRYCG 2 cut(s) 196, 936
BshFI GGCC 2 cut(s) 86, 195
BshTI ACCGGT 1 cut(s) 851
BsiEI CGRYCG 2 cut(s) 196, 936
BsiHKAI GWGCWC 2 cut(s) 175, 216
BsiSI CCGG 5 cut(s) 47, 57, 192, 249, 852
BslFI GGGAC 3 cut(s) 336, 651, 776
BslI CCNNNNNNNGG 1 cut(s) 675
BsmAI GTCTC 5 cut(s) 203, 229, 287, 860, 1027
BsmBI CGTCTC 4 cut(s) 203, 229, 287, 1027
BsmFI GGGAC 3 cut(s) 336, 651, 776
BsnI GGCC 2 cut(s) 86, 195
Bso31I GGTCTC 1 cut(s) 860
Bsp1286I GDGCHC 3 cut(s) 175, 216, 415
Bsp143I GATC 3 cut(s) 486, 570, 933
Bsp1720I GCTNAGC 1 cut(s) 1404
BspACI CCGC 9 cut(s) 112, 219, 320, 462, 464, 491, 1202, 1211, 1412
BspANI GGCC 2 cut(s) 86, 195
BspCNI CTCAG 4 cut(s) 193, 239, 1022, 1396
BspFNI CGCG 2 cut(s) 320, 464
BspLI GGNNCC 4 cut(s) 61, 414, 444, 764
BspMI ACCTGC 1 cut(s) 1279
BspOI GCTAGC 1 cut(s) 755
BspPI GGATC 2 cut(s) 481, 578
BspQI GCTCTTC 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 860
BsrBI CCGCTC 1 cut(s) 1211
BsrDI GCAATG 1 cut(s) 1242
BsrFI RCCGGY 1 cut(s) 851
BsrI ACTGG 3 cut(s) 742, 878, 1394
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 2 cut(s) 462, 1303
BssMI GATC 3 cut(s) 486, 570, 933
BssNI GRCGYC 1 cut(s) 71
BssSI CACGAG 3 cut(s) 36, 670, 1132
Bst2BI CACGAG 3 cut(s) 36, 670, 1132
Bst4CI ACNGT 2 cut(s) 728, 1162
Bst6I CTCTTC 2 cut(s) 96, 620
BstACI GRCGYC 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 1237
BstC8I GCNNGC 6 cut(s) 216, 611, 753, 1221, 1349, 1410
BstDEI CTNAG 6 cut(s) 180, 226, 790, 1009, 1069, 1404
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 3 cut(s) 282, 339, 489
BstFNI CGCG 2 cut(s) 320, 464
BstHHI GCGC 2 cut(s) 320, 1447
BstKTI GATC 3 cut(s) 489, 573, 936
BstMAI GTCTC 5 cut(s) 203, 229, 287, 860, 1027
BstMBI GATC 3 cut(s) 486, 570, 933
BstMCI CGRYCG 2 cut(s) 196, 936
BstMWI GCNNNNNNNGC 9 cut(s) 134, 317, 509, 989, 998, 1121, 1208, 1229, 1409
BstNSI RCATGY 1 cut(s) 599
BstUI CGCG 2 cut(s) 320, 464
BstV1I GCAGC 5 cut(s) 521, 662, 934, 1004, 1133
BstX2I RGATCY 1 cut(s) 570
BstYI RGATCY 1 cut(s) 570
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 2 cut(s) 86, 195
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 3 cut(s) 282, 339, 489
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 3 cut(s) 144, 1017, 1158
BveI ACCTGC 1 cut(s) 1279
Cac8I GCNNGC 6 cut(s) 216, 611, 753, 1221, 1349, 1410
CaiI CAGNNNCTG 1 cut(s) 1225
CfoI GCGC 2 cut(s) 320, 1447
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 3 cut(s) 84, 131, 763
Cfr42I CCGCGG 1 cut(s) 465
CseI GACGC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 826
CspAI ACCGGT 1 cut(s) 851
CviAII CATG 6 cut(s) 268, 360, 596, 901, 925, 1057
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 6 cut(s) 180, 226, 790, 1009, 1069, 1404
DpnI GATC 3 cut(s) 488, 572, 935
DpnII GATC 3 cut(s) 486, 570, 933
EaeI YGGCCR 1 cut(s) 193
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 96, 620
EarI CTCTTC 2 cut(s) 96, 620
Ecl136II GAGCTC 1 cut(s) 214
EclXI CGGCCG 1 cut(s) 193
Eco24I GRGCYC 2 cut(s) 216, 415
Eco31I GGTCTC 1 cut(s) 860
Eco47I GGWCC 2 cut(s) 131, 763
Eco52I CGGCCG 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 763
EcoT38I GRGCYC 2 cut(s) 216, 415
Esp3I CGTCTC 4 cut(s) 203, 229, 287, 1027
FaeI CATG 6 cut(s) 271, 363, 599, 904, 928, 1060
FaqI GGGAC 3 cut(s) 336, 651, 776
FatI CATG 6 cut(s) 267, 359, 595, 900, 924, 1056
FauI CCCGC 4 cut(s) 313, 457, 498, 1204
FauNDI CATATG 1 cut(s) 313
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 8 cut(s) 113, 219, 462, 510, 651, 948, 993, 1122
FokI GGATG 3 cut(s) 289, 346, 496
FriOI GRGCYC 2 cut(s) 216, 415
Fsp4HI GCNGC 8 cut(s) 113, 219, 462, 510, 651, 948, 993, 1122
FspBI CTAG 2 cut(s) 752, 1298
GlaI GCGC 2 cut(s) 319, 1446
GluI GCNGC 8 cut(s) 113, 219, 462, 510, 651, 948, 993, 1122
GsaI CCCAGC 1 cut(s) 980
GsuI CTGGAG 2 cut(s) 597, 1163
HaeIII GGCC 2 cut(s) 86, 195
HapII CCGG 5 cut(s) 47, 57, 192, 249, 852
HgaI GACGC 1 cut(s) 60
HhaI GCGC 2 cut(s) 320, 1447
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 6 cut(s) 271, 363, 599, 904, 928, 1060
Hin6I GCGC 2 cut(s) 318, 1445
HinP1I GCGC 2 cut(s) 318, 1445
HinfI GANTC 4 cut(s) 104, 1290, 1371, 1417
HpaII CCGG 5 cut(s) 47, 57, 192, 249, 852
HphI GGTGA 3 cut(s) 46, 215, 706
Hpy166II GTNNAC 6 cut(s) 206, 305, 403, 735, 918, 1240
Hpy188I TCNGA 4 cut(s) 183, 724, 1265, 1428
Hpy188III TCNNGA 6 cut(s) 38, 520, 576, 761, 1045, 1168
Hpy8I GTNNAC 6 cut(s) 206, 305, 403, 735, 918, 1240
HpyAV CCTTC 4 cut(s) 268, 439, 869, 905
HpyCH4III ACNGT 2 cut(s) 728, 1162
HpyCH4IV ACGT 3 cut(s) 296, 355, 1236
HpyF10VI GCNNNNNNNGC 9 cut(s) 134, 317, 509, 989, 998, 1121, 1208, 1229, 1409
HpyF3I CTNAG 6 cut(s) 180, 226, 790, 1009, 1069, 1404
HpySE526I ACGT 3 cut(s) 296, 355, 1236
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 6 cut(s) 271, 363, 599, 904, 928, 1060
HspAI GCGC 2 cut(s) 318, 1445
KspI CCGCGG 1 cut(s) 465
Kzo9I GATC 3 cut(s) 486, 570, 933
LguI GCTCTTC 1 cut(s) 620
LmnI GCTCC 3 cut(s) 418, 448, 1208
Lsp1109I GCAGC 5 cut(s) 521, 662, 934, 1004, 1133
LweI GCATC 1 cut(s) 874
MaeI CTAG 2 cut(s) 752, 1298
MaeII ACGT 3 cut(s) 296, 355, 1236
MaeIII GTNAC 2 cut(s) 540, 847
MalI GATC 3 cut(s) 488, 572, 935
MbiI CCGCTC 1 cut(s) 1211
MboI GATC 3 cut(s) 486, 570, 933
MboII GAAGA 3 cut(s) 113, 424, 607
MflI RGATCY 1 cut(s) 570
MhlI GDGCHC 3 cut(s) 175, 216, 415
MluCI AATT 2 cut(s) 530, 1004
MlyI GAGTC 2 cut(s) 113, 1426
MmeI TCCRAC 1 cut(s) 1186
MseI TTAA 3 cut(s) 630, 710, 942
MslI CAYNNNNRTG 1 cut(s) 899
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 5 cut(s) 47, 57, 192, 249, 852
MvnI CGCG 2 cut(s) 320, 464
MwoI GCNNNNNNNGC 9 cut(s) 134, 317, 509, 989, 998, 1121, 1208, 1229, 1409
NdeI CATATG 1 cut(s) 313
NdeII GATC 3 cut(s) 486, 570, 933
NheI GCTAGC 1 cut(s) 751
NlaIII CATG 6 cut(s) 271, 363, 599, 904, 928, 1060
NlaIV GGNNCC 4 cut(s) 61, 414, 444, 764
NmeAIII GCCGAG 1 cut(s) 1284
NmuCI GTSAC 1 cut(s) 540
NspI RCATGY 1 cut(s) 599
PciSI GCTCTTC 1 cut(s) 620
PfeI GAWTC 2 cut(s) 1290, 1371
PinAI ACCGGT 1 cut(s) 851
PkrI GCNGC 8 cut(s) 114, 220, 463, 511, 652, 949, 994, 1123
Ple19I CGATCG 1 cut(s) 936
PleI GAGTC 2 cut(s) 112, 1425
PpsI GAGTC 2 cut(s) 112, 1425
Ppu21I YACGTR 1 cut(s) 1237
PpuMI RGGWCCY 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 216
Psp1406I AACGTT 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 763
PspFI CCCAGC 1 cut(s) 976
PspN4I GGNNCC 4 cut(s) 61, 414, 444, 764
PspPI GGNCC 3 cut(s) 84, 131, 763
PspPPI RGGWCCY 1 cut(s) 763
PstNI CAGNNNCTG 1 cut(s) 1225
PsuI RGATCY 1 cut(s) 570
PvuI CGATCG 1 cut(s) 936
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
RseI CAYNNNNRTG 1 cut(s) 899
SacI GAGCTC 1 cut(s) 216
SacII CCGCGG 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 620
SaqAI TTAA 3 cut(s) 630, 710, 942
SatI GCNGC 8 cut(s) 113, 219, 462, 510, 651, 948, 993, 1122
Sau3AI GATC 3 cut(s) 486, 570, 933
Sau96I GGNCC 3 cut(s) 84, 131, 763
SchI GAGTC 2 cut(s) 113, 1426
SduI GDGCHC 3 cut(s) 175, 216, 415
SfaNI GCATC 1 cut(s) 874
Sfr303I CCGCGG 1 cut(s) 465
SgrBI CCGCGG 1 cut(s) 465
SinI GGWCC 2 cut(s) 131, 763
SmiMI CAYNNNNRTG 1 cut(s) 899
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 2 cut(s) 530, 1004
SsiI CCGC 9 cut(s) 112, 219, 320, 462, 464, 491, 1202, 1211, 1412
SspMI CTAG 2 cut(s) 752, 1298
SstI GAGCTC 1 cut(s) 216
TaaI ACNGT 2 cut(s) 728, 1162
TaiI ACGT 3 cut(s) 299, 358, 1239
TaqI TCGA 5 cut(s) 107, 882, 932, 968, 1420
TasI AATT 2 cut(s) 530, 1004
TauI GCSGC 3 cut(s) 115, 221, 464
TfiI GAWTC 2 cut(s) 1290, 1371
Tru1I TTAA 3 cut(s) 630, 710, 942
Tru9I TTAA 3 cut(s) 630, 710, 942
TscAI CASTG 3 cut(s) 151, 1017, 1165
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 5 cut(s) 509, 650, 947, 992, 1121
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 3 cut(s) 348, 607, 917
TspRI CASTG 3 cut(s) 151, 1017, 1165
VpaK11BI GGWCC 2 cut(s) 131, 763
XapI RAATTY 2 cut(s) 530, 1004
XceI RCATGY 1 cut(s) 599
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 2 cut(s) 752, 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.