RLG00000011349

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
8785210 .. 8787996
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011349

Sequence Viewer

Length: 1455 bp
ATGGGGGCCGTAGTAGACGATACTCCACTTCTGGTAAGTAACCACAGCGGTCATGAAGACGAAAAGGAACTCGGGTTTATTCCCAAGTTTCGGATAGAGTCGAAGAAGCTATGGAAGATTGCTGGCCCTGCAATCTTTACCGCCTTATGTCAGTACTCGTTGGGTGCTCTGACTCAGACCTTCACCGGGTTCGTTGGGGAGCTCGAGCTCGCTGCCGTCTCCGTCGAGAACTCCGTCGTCGCTGGTCTTGCCTTCGGTGTCATGTTGGGAATGGGGAGTGCATTGGAGACGCTATGTGGGCAAGCATACGGTGCGGGACAAATCAGAATGTTGGGTGTGTACATGCAGAGATCATGGATTATTTTGCTGACCACATCTCTATTCTTGGTTCCGATATATGTTTGGTCTCCTCCCATTCTTGAGCTCATTGGTGAGACCGACGAGATATCTGAGGCCGCCGGAAAGTTTGCTATATGGATGATTCCACAATTGTTCGCCTACGCGCTCAATTTTCCCATACAGAAATTCTTACAAGCACAGAGGAAAGTGTTTGTGATGGCCTATATATCAGCTGTTGTGCTAGTTTTGCACGCCTTCTTCAGCTGGTTGCTAATTTTGAAGCTCGGGTGGGGATTGACTGGAGCCGCAATCACACTCAACACCTCATGGTGGCTCATTGTCATTGGCCAATTGTTGTACATCTTCATTACCAAGTCAGATGGTGCCTGGAGCGGCTTCTCCATGCTCGCTTTTGCCGACCTATGGGGCTTCGTTAAGCTTTCTCTAGCTTCTGCTGTGATGTTGTGTTTGGAATTCTGGTACCTGATGGTGCTTGTGGTTATAACTGGCCGGTTGGCGGACCCTTTGATCCCGGTTGATGCCATCTCTATTTGCATGAACATACAAGGATGGGATGCCATGATTGCACTTGGGTTTAATGCTGCAATCAGTGTGAGGGTGTCAAATGAACTTGGAGCTGGAAATGCCAAGTTAGCAAAATTTGCGGTGATAGTGGTTTCGATCACTTCTGTGTCTATAGGAGTTGTTTGTATGGCCATAGTTCTTGGAACAAGGGATTACTTCCCTTACCTATTCACCAGCAGTGAGGCTGTTGCTGAGGAAACTACCCAACTTGCAACCTTGCTTGGCATCACTGTGCTTCTTAACAGTCTTCAACCAGTCTTATCTGGTGTTGCTGTTGGAGCTGGATGGCAATCTGTTGTCGCGTACATCAACATTGGGTGTTACTATATTGTTGGATTGCCAGCTGGAATACTTCTGGGATTCACATTTGCTTTTGGCGTTGAGGGTATTTGGTCAGGAATGATCGGTGGCATTTGCTTGCAAACCATAATCTTGATAGTTGTCACTTCCATAACCAACTGGAACACAGAGGCTGAACAAGCCGAGAGCCGTGTCCTCAAGTGGGGAGGAGGAAGAAATGGAGAGCACTAA

Protein Analysis

485

Amino Acids

52.22

Weight (kDa)

5.04

Isoelectric Point (pI)

25.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 43 - 203 8.6e-35 MatE
MatE PF01554 264 - 424 8.4e-26 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016632)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47530 AT1G47530
fragaria_vesca FvH4_2g40430
malus_domestica MD00G1039400.v1.1 MD08G1037600.v1.1
prunus_persica Prupe.1G384800_v2.0.a1
pyrus_communis pycom08g02990
rosa_chinensis RchiOBHm_Chr6g0300301
rosa_laevigata RLG00000011349
rosa_multiflora Rmu_sc0001670.1_g000023
rosa_roxburghii Rroxscaffold_7G00167910
rosa_rugosa Rorug06G0294800
rosa_samantha Rh6CG422300
rosa_wichuraiana Rw6G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 842
Acc65I GGTACC 1 cut(s) 819
AccB1I GGYRCC 2 cut(s) 722, 819
AccBSI CCGCTC 1 cut(s) 732
AccI GTMKAC 1 cut(s) 15
AccII CGCG 2 cut(s) 503, 1226
AciI CCGC 8 cut(s) 48, 141, 314, 456, 645, 732, 857, 1004
AclWI GGATC 1 cut(s) 862
AcoI YGGCCR 3 cut(s) 685, 847, 1053
AcsI RAATTY 3 cut(s) 524, 812, 998
AcuI CTGAAG 1 cut(s) 583
AfaI GTAC 5 cut(s) 155, 341, 698, 821, 1229
AfiI CCNNNNNNNGG 6 cut(s) 90, 186, 669, 762, 856, 1426
AgsI TTSAA 2 cut(s) 619, 1175
AjnI CCWGG 1 cut(s) 725
AleI CACNNNNGTG 1 cut(s) 1028
Alw21I GWGCWC 5 cut(s) 169, 204, 210, 426, 1452
Alw26I GTCTC 4 cut(s) 223, 281, 411, 428
AlwI GGATC 1 cut(s) 862
AlwNI CAGNNNCTG 1 cut(s) 1397
Ama87I CYCGRG 3 cut(s) 71, 203, 623
AoxI GGCC 7 cut(s) 6, 124, 453, 558, 685, 847, 1053
ApeKI GCWGC 2 cut(s) 212, 941
ApoI RAATTY 3 cut(s) 524, 812, 998
Asp718I GGTACC 1 cut(s) 819
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 3 cut(s) 6, 125, 859
AsuC2I CCSGG 2 cut(s) 187, 872
AsuHPI GGTGA 4 cut(s) 175, 443, 1018, 1087
AvaI CYCGRG 3 cut(s) 71, 203, 623
AvaII GGWCC 1 cut(s) 859
BalI TGGCCA 2 cut(s) 687, 1055
BanI GGYRCC 2 cut(s) 722, 819
BanII GRGCYC 3 cut(s) 204, 210, 426
BbsI GAAGAC 2 cut(s) 63, 1163
Bbv12I GWGCWC 5 cut(s) 169, 204, 210, 426, 1452
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 2 cut(s) 199, 928
BccI CCATC 6 cut(s) 550, 713, 820, 890, 903, 1203
BceAI ACGGC 2 cut(s) 200, 1398
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 727
BcnI CCSGG 2 cut(s) 187, 872
BcoDI GTCTC 4 cut(s) 223, 281, 411, 428
BfaI CTAG 2 cut(s) 581, 785
BfmI CTRYAG 1 cut(s) 1035
BisI GCNGC 5 cut(s) 213, 456, 645, 733, 942
BlsI GCNGC 5 cut(s) 214, 457, 646, 734, 943
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 3 cut(s) 187, 727, 872
Bme18I GGWCC 1 cut(s) 859
BmeT110I CYCGRG 3 cut(s) 71, 203, 623
BmgT120I GGNCC 3 cut(s) 6, 125, 859
BmiI GGNNCC 6 cut(s) 7, 390, 643, 724, 821, 861
BmrFI CCNGG 3 cut(s) 187, 727, 872
BmsI GCATC 3 cut(s) 868, 904, 1158
BpiI GAAGAC 2 cut(s) 63, 1163
BpmI CTGGAG 2 cut(s) 660, 748
Bpu10I CCTNAGC 1 cut(s) 1116
BpuEI CTTGAG 2 cut(s) 440, 1406
BpuMI CCSGG 2 cut(s) 187, 872
BsaBI GATNNNNATC 1 cut(s) 1213
BsaI GGTCTC 2 cut(s) 411, 428
Bsc4I CCNNNNNNNGG 6 cut(s) 90, 186, 669, 762, 856, 1426
Bse118I RCCGGY 1 cut(s) 849
Bse1I ACTGG 4 cut(s) 643, 850, 1178, 1388
Bse8I GATNNNNATC 1 cut(s) 1213
BseBI CCWGG 1 cut(s) 727
BseGI GGATG 4 cut(s) 483, 914, 919, 1214
BseJI GATNNNNATC 1 cut(s) 1213
BseLI CCNNNNNNNGG 6 cut(s) 90, 186, 669, 762, 856, 1426
BseMII CTCAG 3 cut(s) 188, 441, 1107
BseNI ACTGG 4 cut(s) 643, 850, 1178, 1388
BseRI GAGGAG 2 cut(s) 399, 1446
BseXI GCAGC 2 cut(s) 199, 928
Bsh1236I CGCG 2 cut(s) 503, 1226
BshFI GGCC 7 cut(s) 8, 126, 455, 560, 687, 849, 1055
BshNI GGYRCC 2 cut(s) 722, 819
BsiHKAI GWGCWC 5 cut(s) 169, 204, 210, 426, 1452
BsiHKCI CYCGRG 3 cut(s) 71, 203, 623
BsiSI CCGG 4 cut(s) 186, 459, 850, 872
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 6 cut(s) 90, 186, 669, 762, 856, 1426
BsmAI GTCTC 4 cut(s) 223, 281, 411, 428
BsmBI CGTCTC 2 cut(s) 223, 281
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 7 cut(s) 8, 126, 455, 560, 687, 849, 1055
Bso31I GGTCTC 2 cut(s) 411, 428
BsoBI CYCGRG 3 cut(s) 71, 203, 623
Bsp1286I GDGCHC 5 cut(s) 169, 204, 210, 426, 1452
Bsp1407I TGTACA 2 cut(s) 339, 696
Bsp143I GATC 4 cut(s) 350, 867, 1020, 1326
BspACI CCGC 8 cut(s) 48, 141, 314, 456, 645, 732, 857, 1004
BspANI GGCC 7 cut(s) 8, 126, 455, 560, 687, 849, 1055
BspCNI CTCAG 3 cut(s) 187, 442, 1108
BspFNI CGCG 2 cut(s) 503, 1226
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 6 cut(s) 7, 390, 643, 724, 821, 861
BspPI GGATC 1 cut(s) 862
BspT107I GGYRCC 2 cut(s) 722, 819
BspTNI GGTCTC 2 cut(s) 411, 428
BsrBI CCGCTC 1 cut(s) 732
BsrFI RCCGGY 1 cut(s) 849
BsrGI TGTACA 2 cut(s) 339, 696
BsrI ACTGG 4 cut(s) 643, 850, 1178, 1388
BssAI RCCGGY 1 cut(s) 849
BssMI GATC 4 cut(s) 350, 867, 1020, 1326
Bst2UI CCWGG 1 cut(s) 727
Bst4CI ACNGT 3 cut(s) 311, 1156, 1169
BstAPI GCANNNNNTGC 2 cut(s) 311, 1001
BstAUI TGTACA 2 cut(s) 339, 696
BstC8I GCNNGC 7 cut(s) 124, 210, 303, 591, 747, 1266, 1343
BstDEI CTNAG 3 cut(s) 174, 450, 1116
BstF5I GGATG 4 cut(s) 483, 914, 919, 1214
BstFNI CGCG 2 cut(s) 503, 1226
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 4 cut(s) 353, 870, 1023, 1329
BstMAI GTCTC 4 cut(s) 223, 281, 411, 428
BstMBI GATC 4 cut(s) 350, 867, 1020, 1326
BstNI CCWGG 1 cut(s) 727
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 3 cut(s) 185, 725, 870
BstSFI CTRYAG 1 cut(s) 1035
BstUI CGCG 2 cut(s) 503, 1226
BstV1I GCAGC 2 cut(s) 199, 928
BstV2I GAAGAC 2 cut(s) 63, 1163
BsuRI GGCC 7 cut(s) 8, 126, 455, 560, 687, 849, 1055
BtsCI GGATG 4 cut(s) 483, 914, 919, 1214
BtsI GCAGTG 1 cut(s) 1108
BtsIMutI CAGTG 3 cut(s) 955, 1108, 1152
Cac8I GCNNGC 7 cut(s) 124, 210, 303, 591, 747, 1266, 1343
CaiI CAGNNNCTG 1 cut(s) 1397
CciI TCATGA 1 cut(s) 52
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 849
Cfr13I GGNCC 3 cut(s) 6, 125, 859
CseI GACGC 1 cut(s) 298
Csp6I GTAC 5 cut(s) 154, 340, 697, 820, 1228
CviAII CATG 8 cut(s) 53, 262, 343, 354, 666, 742, 895, 919
CviQI GTAC 5 cut(s) 154, 340, 697, 820, 1228
DdeI CTNAG 3 cut(s) 174, 450, 1116
DpnI GATC 4 cut(s) 352, 869, 1022, 1328
DpnII GATC 4 cut(s) 350, 867, 1020, 1326
EaeI YGGCCR 3 cut(s) 685, 847, 1053
EciI GGCGGA 1 cut(s) 872
Ecl136II GAGCTC 3 cut(s) 202, 208, 424
Eco24I GRGCYC 3 cut(s) 204, 210, 426
Eco31I GGTCTC 2 cut(s) 411, 428
Eco32I GATATC 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 859
Eco53kI GAGCTC 3 cut(s) 202, 208, 424
Eco57I CTGAAG 1 cut(s) 583
Eco88I CYCGRG 3 cut(s) 71, 203, 623
EcoICRI GAGCTC 3 cut(s) 202, 208, 424
EcoRI GAATTC 1 cut(s) 812
EcoRII CCWGG 1 cut(s) 725
EcoRV GATATC 1 cut(s) 447
EcoT38I GRGCYC 3 cut(s) 204, 210, 426
Esp3I CGTCTC 2 cut(s) 223, 281
FaeI CATG 8 cut(s) 56, 265, 346, 357, 669, 745, 898, 922
FaqI GGGAC 1 cut(s) 330
FatI CATG 8 cut(s) 52, 261, 342, 353, 665, 741, 894, 918
FauI CCCGC 1 cut(s) 307
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 5 cut(s) 213, 456, 645, 733, 942
FokI GGATG 4 cut(s) 490, 921, 926, 1221
FriOI GRGCYC 3 cut(s) 204, 210, 426
Fsp4HI GCNGC 5 cut(s) 213, 456, 645, 733, 942
FspBI CTAG 2 cut(s) 581, 785
GlaI GCGC 1 cut(s) 504
GluI GCNGC 5 cut(s) 213, 456, 645, 733, 942
GsuI CTGGAG 2 cut(s) 660, 748
HaeIII GGCC 7 cut(s) 8, 126, 455, 560, 687, 849, 1055
HapII CCGG 4 cut(s) 186, 459, 850, 872
HgaI GACGC 1 cut(s) 298
HhaI GCGC 1 cut(s) 505
Hin1II CATG 8 cut(s) 56, 265, 346, 357, 669, 745, 898, 922
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 4 cut(s) 98, 172, 481, 1284
HpaII CCGG 4 cut(s) 186, 459, 850, 872
HphI GGTGA 4 cut(s) 175, 443, 1018, 1087
Hpy166II GTNNAC 2 cut(s) 16, 340
Hpy188I TCNGA 7 cut(s) 93, 171, 177, 326, 393, 451, 718
Hpy188III TCNNGA 5 cut(s) 53, 226, 419, 1320, 1357
Hpy8I GTNNAC 2 cut(s) 16, 340
Hpy99I CGWCG 4 cut(s) 227, 239, 242, 443
HpyAV CCTTC 3 cut(s) 190, 262, 604
HpyCH4III ACNGT 3 cut(s) 311, 1156, 1169
HpyCH4V TGCA 9 cut(s) 131, 281, 346, 589, 894, 926, 944, 1136, 1345
HpyF3I CTNAG 3 cut(s) 174, 450, 1116
Hsp92II CATG 8 cut(s) 56, 265, 346, 357, 669, 745, 898, 922
HspAI GCGC 1 cut(s) 503
KpnI GGTACC 1 cut(s) 823
Kzo9I GATC 4 cut(s) 350, 867, 1020, 1326
LmnI GCTCC 5 cut(s) 199, 641, 729, 974, 1202
Lsp1109I GCAGC 2 cut(s) 199, 928
LweI GCATC 3 cut(s) 868, 904, 1158
MaeI CTAG 2 cut(s) 581, 785
MaeIII GTNAC 3 cut(s) 38, 1244, 1366
MalI GATC 4 cut(s) 352, 869, 1022, 1328
MbiI CCGCTC 1 cut(s) 732
MboI GATC 4 cut(s) 350, 867, 1020, 1326
MboII GAAGA 7 cut(s) 68, 115, 127, 589, 694, 1163, 1449
MfeI CAATTG 2 cut(s) 488, 689
MhlI GDGCHC 5 cut(s) 169, 204, 210, 426, 1452
MlsI TGGCCA 2 cut(s) 687, 1055
MluCI AATT 7 cut(s) 488, 508, 524, 612, 689, 812, 998
MluNI TGGCCA 2 cut(s) 687, 1055
MlyI GAGTC 2 cut(s) 107, 166
MmeI TCCRAC 2 cut(s) 1180, 1237
Mox20I TGGCCA 2 cut(s) 687, 1055
MscI TGGCCA 2 cut(s) 687, 1055
MseI TTAA 3 cut(s) 774, 936, 1164
MslI CAYNNNNRTG 2 cut(s) 1028, 1154
Msp20I TGGCCA 2 cut(s) 687, 1055
MspA1I CMGCKG 4 cut(s) 48, 572, 603, 1268
MspI CCGG 4 cut(s) 186, 459, 850, 872
MspR9I CCNGG 3 cut(s) 187, 727, 872
MunI CAATTG 2 cut(s) 488, 689
MvaI CCWGG 1 cut(s) 727
MvnI CGCG 2 cut(s) 503, 1226
NciI CCSGG 2 cut(s) 187, 872
NdeII GATC 4 cut(s) 350, 867, 1020, 1326
NlaIII CATG 8 cut(s) 56, 265, 346, 357, 669, 745, 898, 922
NlaIV GGNNCC 6 cut(s) 7, 390, 643, 724, 821, 861
NmeAIII GCCGAG 1 cut(s) 1432
NmuCI GTSAC 1 cut(s) 1366
NspI RCATGY 1 cut(s) 346
OliI CACNNNNGTG 1 cut(s) 1028
PaeR7I CTCGAG 1 cut(s) 203
PagI TCATGA 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 753
PfeI GAWTC 2 cut(s) 481, 1284
PkrI GCNGC 5 cut(s) 214, 457, 646, 734, 943
PleI GAGTC 2 cut(s) 106, 166
PpsI GAGTC 2 cut(s) 106, 166
PsiI TTATAA 1 cut(s) 842
Psp124BI GAGCTC 3 cut(s) 204, 210, 426
Psp6I CCWGG 1 cut(s) 725
PspGI CCWGG 1 cut(s) 725
PspN4I GGNNCC 6 cut(s) 7, 390, 643, 724, 821, 861
PspPI GGNCC 3 cut(s) 6, 125, 859
PspXI VCTCGAGB 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 1397
PvuII CAGCTG 3 cut(s) 572, 603, 1268
RsaI GTAC 5 cut(s) 155, 341, 698, 821, 1229
RsaNI GTAC 5 cut(s) 154, 340, 697, 820, 1228
RseI CAYNNNNRTG 2 cut(s) 1028, 1154
SacI GAGCTC 3 cut(s) 204, 210, 426
SaqAI TTAA 3 cut(s) 774, 936, 1164
SatI GCNGC 5 cut(s) 213, 456, 645, 733, 942
Sau3AI GATC 4 cut(s) 350, 867, 1020, 1326
Sau96I GGNCC 3 cut(s) 6, 125, 859
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 2 cut(s) 107, 166
ScrFI CCNGG 3 cut(s) 187, 727, 872
SduI GDGCHC 5 cut(s) 169, 204, 210, 426, 1452
SfaNI GCATC 3 cut(s) 868, 904, 1158
SfcI CTRYAG 1 cut(s) 1035
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 859
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 1028, 1154
SmlI CTYRAG 3 cut(s) 203, 419, 1421
SmoI CTYRAG 3 cut(s) 203, 419, 1421
Sse9I AATT 7 cut(s) 488, 508, 524, 612, 689, 812, 998
SsiI CCGC 8 cut(s) 48, 141, 314, 456, 645, 732, 857, 1004
SspMI CTAG 2 cut(s) 581, 785
SstI GAGCTC 3 cut(s) 204, 210, 426
StyD4I CCNGG 3 cut(s) 185, 725, 870
TaaI ACNGT 3 cut(s) 311, 1156, 1169
TaqI TCGA 4 cut(s) 101, 204, 225, 1019
TaqII GACCGA 1 cut(s) 452
TasI AATT 7 cut(s) 488, 508, 524, 612, 689, 812, 998
TatI WGTACW 3 cut(s) 153, 339, 696
TauI GCSGC 3 cut(s) 458, 647, 735
TfiI GAWTC 2 cut(s) 481, 1284
Tru1I TTAA 3 cut(s) 774, 936, 1164
Tru9I TTAA 3 cut(s) 774, 936, 1164
TscAI CASTG 3 cut(s) 955, 1108, 1159
TseFI GTSAC 1 cut(s) 1366
TseI GCWGC 2 cut(s) 212, 941
Tsp45I GTSAC 1 cut(s) 1366
TspDTI ATGAA 4 cut(s) 69, 694, 911, 981
TspGWI ACGGA 2 cut(s) 211, 223
TspRI CASTG 3 cut(s) 955, 1108, 1159
VpaK11BI GGWCC 1 cut(s) 859
XapI RAATTY 3 cut(s) 524, 812, 998
XceI RCATGY 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 581, 785
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.