AT1G48330

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17863660 .. 17864558
899 bp
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UTR
Exon/CDS
Intron
AT1G48330.1

Sequence Viewer

Length: 228 bp
ATGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCAACGTTCTTTAACCAACCGCAGCAAACGAACCGCCACGCAAACGCAAAGGCGAGAGAAGAACATGAGAAACGAACGGTACAGGAGCTTCAAGGTGATGTCATGGCTTGTGGTTATGAAGATGTCCTCGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCAAACAACCTCTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.52

Weight (kDa)

8.89

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016623)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48330 AT3G17580
fragaria_vesca FvH4_4g21760
malus_domestica MD13G1137200.v1.1 MD16G1133100.v1.1
prunus_persica Prupe.1G208000_v2.0.a1
pyrus_communis pycom13g11950 pycom16g11720
rosa_chinensis RchiOBHm_Chr4g0427991
rosa_multiflora Rmu_sc0000066.1_g000005
rosa_roxburghii Rroxscaffold_5G00369660
rosa_rugosa Rorug04G0220800
rosa_samantha Rh4AG278300
rosa_wichuraiana Rw4G024190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 44, 65, 79
AclI AACGTT 1 cut(s) 50
AfaI GTAC 1 cut(s) 126
AgsI TTSAA 3 cut(s) 37, 137, 210
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 152
BarI GAAGNNNNNNTAC 2 cut(s) 117, 149
BbvI GCAGC 1 cut(s) 79
BisI GCNGC 2 cut(s) 45, 68
BlsI GCNGC 2 cut(s) 46, 69
BseXI GCAGC 1 cut(s) 79
BspACI CCGC 3 cut(s) 44, 65, 79
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 125
CviAII CATG 4 cut(s) 9, 110, 148, 178
CviJI RGCY 3 cut(s) 5, 133, 152
CviKI_1 RGCY 3 cut(s) 5, 133, 152
CviQI GTAC 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
FaeI CATG 4 cut(s) 12, 113, 151, 181
FaiI YATR 5 cut(s) 10, 111, 149, 162, 179
FatI CATG 4 cut(s) 8, 109, 147, 177
Fnu4HI GCNGC 2 cut(s) 45, 68
Fsp4HI GCNGC 2 cut(s) 45, 68
GluI GCNGC 2 cut(s) 45, 68
Hin1II CATG 4 cut(s) 12, 113, 151, 181
HphI GGTGA 1 cut(s) 152
Hpy188III TCNNGA 3 cut(s) 37, 191, 225
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 4 cut(s) 12, 113, 151, 181
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 1 cut(s) 113
Lsp1109I GCAGC 1 cut(s) 79
MaeII ACGT 1 cut(s) 50
MboII GAAGA 5 cut(s) 25, 116, 176, 198, 213
MluCI AATT 1 cut(s) 186
MnlI CCTC 2 cut(s) 182, 227
MseI TTAA 1 cut(s) 57
NlaIII CATG 4 cut(s) 12, 113, 151, 181
PkrI GCNGC 2 cut(s) 46, 69
Psp1406I AACGTT 1 cut(s) 50
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 45, 68
SetI ASST 4 cut(s) 53, 135, 142, 219
Sse9I AATT 1 cut(s) 186
SsiI CCGC 3 cut(s) 44, 65, 79
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 53
TasI AATT 1 cut(s) 186
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.