FvH4_4g21760

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
24772138 .. 24773786
1649 bp
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UTR
Exon/CDS
Intron
FvH4_4g21760.t1

Sequence Viewer

Length: 225 bp
ATGGCTTCTTGGAAGAAGACCATCACAACCCCATTCAGGAAAGCTGCCAAGGTCTTCAACCAGCAGCCAAGCACCAGAGACCAGAAGAAGTCTCAGCTTCAAGGGAATGAGAACAGTGTGACTGCTCTGCAATGTGAAGTGATGGCTTGTGGTTATGAAGATGTTCAGGTCATGTGGTCTATTCTGGACAAGTCCAACTCCTCAGCCTGCAACATCACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.26

Weight (kDa)

8.93

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016623)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48330 AT3G17580
fragaria_vesca FvH4_4g21760
malus_domestica MD13G1137200.v1.1 MD16G1133100.v1.1
prunus_persica Prupe.1G208000_v2.0.a1
pyrus_communis pycom13g11950 pycom16g11720
rosa_chinensis RchiOBHm_Chr4g0427991
rosa_multiflora Rmu_sc0000066.1_g000005
rosa_roxburghii Rroxscaffold_5G00369660
rosa_rugosa Rorug04G0220800
rosa_samantha Rh4AG278300
rosa_wichuraiana Rw4G024190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 2 cut(s) 58, 101
AluBI AGCT 2 cut(s) 44, 97
AluI AGCT 2 cut(s) 44, 97
Alw26I GTCTC 2 cut(s) 72, 96
ApeKI GCWGC 2 cut(s) 44, 64
Asp700I GAANNNNTTC 1 cut(s) 162
BbsI GAAGAC 2 cut(s) 23, 46
BbvCI CCTCAGC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 31, 76
BccI CCATC 2 cut(s) 29, 136
BcoDI GTCTC 2 cut(s) 72, 96
BisI GCNGC 2 cut(s) 45, 65
BlsI GCNGC 2 cut(s) 46, 66
BpiI GAAGAC 2 cut(s) 23, 46
Bpu10I CCTNAGC 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 2 cut(s) 107, 216
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 2 cut(s) 31, 76
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 72, 96
Bso31I GGTCTC 1 cut(s) 72
BspCNI CTCAG 2 cut(s) 106, 215
BspTNI GGTCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 93, 202
BstMAI GTCTC 2 cut(s) 72, 96
BstV1I GCAGC 2 cut(s) 31, 76
BstV2I GAAGAC 2 cut(s) 23, 46
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 208
CviAII CATG 1 cut(s) 172
CviJI RGCY 6 cut(s) 5, 44, 67, 97, 146, 206
CviKI_1 RGCY 6 cut(s) 5, 44, 67, 97, 146, 206
DdeI CTNAG 2 cut(s) 93, 202
Eco130I CCWWGG 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 156, 173
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 45, 65
Fsp4HI GCNGC 2 cut(s) 45, 65
GluI GCNGC 2 cut(s) 45, 65
Hin1II CATG 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 37, 185
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 130, 210
HpyF3I CTNAG 2 cut(s) 93, 202
Hsp92II CATG 1 cut(s) 175
LpnPI CCDG 7 cut(s) 22, 74, 88, 95, 152, 170, 220
Lsp1109I GCAGC 2 cut(s) 31, 76
MaeIII GTNAC 1 cut(s) 118
MboII GAAGA 5 cut(s) 25, 28, 46, 97, 170
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 223
NlaIII CATG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 162
PkrI GCNGC 2 cut(s) 46, 66
SaqAI TTAA 1 cut(s) 223
SatI GCNGC 2 cut(s) 45, 65
SetI ASST 4 cut(s) 46, 54, 99, 171
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 116
Tru1I TTAA 1 cut(s) 223
Tru9I TTAA 1 cut(s) 223
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 2 cut(s) 44, 64
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.