MD13G1137200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016623
Physical Location & Seq
Reverse (-)
10553840 .. 10554904
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1137200.v1.1.491

Sequence Viewer

Length: 225 bp
ATGGCTTCGTGGAAGAAAACCATTACAACTCCATTCAGGAAAGCTTGCACTTTCTTCAACCAGCAGCCAGGAGGGAGAGACCAGAAGAAGTCTCAGCTTCAAGGGAGTGAAAGTAGTGTGATGGCTCTGCATGGAGAAGTGATGGCATGCGCATATGAAGATGTTCAGGTGATGTGGTCTATCCTGGACAAGTCCAAGGTCTCAGCCTGCAGCATCACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.19

Weight (kDa)

8.93

Isoelectric Point (pI)

60.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016623)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48330 AT3G17580
fragaria_vesca FvH4_4g21760
malus_domestica MD13G1137200.v1.1 MD16G1133100.v1.1
prunus_persica Prupe.1G208000_v2.0.a1
pyrus_communis pycom13g11950 pycom16g11720
rosa_chinensis RchiOBHm_Chr4g0427991
rosa_multiflora Rmu_sc0000066.1_g000005
rosa_roxburghii Rroxscaffold_5G00369660
rosa_rugosa Rorug04G0220800
rosa_samantha Rh4AG278300
rosa_wichuraiana Rw4G024190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 151
AgsI TTSAA 2 cut(s) 58, 101
AjnI CCWGG 2 cut(s) 67, 183
AluBI AGCT 2 cut(s) 44, 97
AluI AGCT 2 cut(s) 44, 97
Alw26I GTCTC 3 cut(s) 72, 96, 205
ApeKI GCWGC 2 cut(s) 64, 210
Asp700I GAANNNNTTC 1 cut(s) 162
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 181
BbvI GCAGC 1 cut(s) 76
BccI CCATC 2 cut(s) 115, 136
BciT130I CCWGG 2 cut(s) 69, 185
BcoDI GTCTC 3 cut(s) 72, 96, 205
BfmI CTRYAG 1 cut(s) 208
BisI GCNGC 2 cut(s) 65, 211
BlsI GCNGC 2 cut(s) 66, 212
Bme1390I CCNGG 2 cut(s) 69, 185
BmrFI CCNGG 2 cut(s) 69, 185
BsaI GGTCTC 2 cut(s) 72, 205
BsaJI CCNNGG 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
BseBI CCWGG 2 cut(s) 69, 185
BseDI CCNNGG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 107, 216
BseXI GCAGC 1 cut(s) 76
BsmAI GTCTC 3 cut(s) 72, 96, 205
Bso31I GGTCTC 2 cut(s) 72, 205
BspCNI CTCAG 2 cut(s) 106, 215
BspMAI CTGCAG 1 cut(s) 212
BspTNI GGTCTC 2 cut(s) 72, 205
BssECI CCNNGG 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 69, 185
BstC8I GCNNGC 3 cut(s) 46, 148, 208
BstDEI CTNAG 2 cut(s) 93, 202
BstHHI GCGC 1 cut(s) 152
BstMAI GTCTC 3 cut(s) 72, 96, 205
BstNI CCWGG 2 cut(s) 69, 185
BstNSI RCATGY 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 67, 183
BstSFI CTRYAG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 76
Cac8I GCNNGC 3 cut(s) 46, 148, 208
CfoI GCGC 1 cut(s) 152
CviAII CATG 2 cut(s) 131, 147
CviJI RGCY 6 cut(s) 5, 44, 67, 97, 125, 206
CviKI_1 RGCY 6 cut(s) 5, 44, 67, 97, 125, 206
DdeI CTNAG 2 cut(s) 93, 202
Eco130I CCWWGG 1 cut(s) 195
Eco31I GGTCTC 2 cut(s) 72, 205
EcoRII CCWGG 2 cut(s) 67, 183
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 134, 150
FaiI YATR 4 cut(s) 132, 148, 154, 156
FatI CATG 2 cut(s) 130, 146
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 65, 211
Fsp4HI GCNGC 2 cut(s) 65, 211
FspAI RTGCGCAY 1 cut(s) 151
FspI TGCGCA 1 cut(s) 151
GlaI GCGC 1 cut(s) 151
GluI GCNGC 2 cut(s) 65, 211
HhaI GCGC 1 cut(s) 152
Hin1II CATG 2 cut(s) 134, 150
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 42
HphI GGTGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 48, 130, 210
HpyF3I CTNAG 2 cut(s) 93, 202
Hsp92II CATG 2 cut(s) 134, 150
HspAI GCGC 1 cut(s) 150
LpnPI CCDG 9 cut(s) 22, 54, 74, 81, 95, 152, 170, 197, 220
Lsp1109I GCAGC 1 cut(s) 76
MboII GAAGA 4 cut(s) 25, 46, 97, 170
MnlI CCTC 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 223
MspR9I CCNGG 2 cut(s) 69, 185
MvaI CCWGG 2 cut(s) 69, 185
NdeI CATATG 1 cut(s) 154
NlaIII CATG 2 cut(s) 134, 150
NsbI TGCGCA 1 cut(s) 151
NspI RCATGY 1 cut(s) 150
PaeI GCATGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 2 cut(s) 66, 212
Psp6I CCWGG 2 cut(s) 67, 183
PspGI CCWGG 2 cut(s) 67, 183
PstI CTGCAG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 223
SatI GCNGC 2 cut(s) 65, 211
ScrFI CCNGG 2 cut(s) 69, 185
SetI ASST 4 cut(s) 46, 99, 171, 201
SfcI CTRYAG 1 cut(s) 208
SphI GCATGC 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 67, 183
StyI CCWWGG 1 cut(s) 195
Tru1I TTAA 1 cut(s) 223
Tru9I TTAA 1 cut(s) 223
TseI GCWGC 2 cut(s) 64, 210
TspDTI ATGAA 1 cut(s) 171
XceI RCATGY 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.