AT1G54930

GRF zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0019607
Physical Location & Seq
Reverse (-)
20478030 .. 20479769
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54930.1

Sequence Viewer

Length: 1062 bp
ATGTCCAGTGGCGATTGCTTCCATTGTCATCAACCAGGCCACTGGGCCAAAAACTGTCCTCTCAAAACCACTACGAAACCCACCGCCGCCGCAGCCCCTTCTCCGCCGGACATTCACTGTCCCTGCAACGCCGGACCTTGCAACACTGTGACTTCTAAAACTGAGAAAAACCCAAACAGGAGATTCTACACATGCCCAAGCTGTGGATATTTCAAGTGGTGTGATCAAGGTTTAGGAGATTGTGGATTCTTTAAATGGGAGGATGGTGAGAGTTTGCTACATGAAACTGAGTTGGACTCTGATGGTAATGTGAAAAGGAACAGACTTGGAGTTGTGGTTGAATTAGAATTGAATCCAGCTTCATCTAGTGAGTCTAATACTCTTGGAAACAGAATTGTTGATACTCTTCCAGTGAATCCAGTCACTGTGGGAAAGGAATCGATTCCGGTTTTCGCAGGTTTCAACGATCAAGGATCGGTCTCCAACAGCATTGTCCCTTCATTTGATTTGATTACACTGTATGACGATGCGGTTCGCCTTGAGACGAAAGAGCCAGTACTCCCTTCAGTTGCCCCTAAACATCTTGATACTCAAGTGGAGACTTTGTGTGGTAATGCATTGGAGGCCGTAGAGAGTAGTTCTCAGAACACAAGCGATCTAGTTTTGAATGCTAACAACAAACCTGAGCATATACATCAACGAGCTGCGACATCTGGTGAAACCGAGGCCTCATATTCAGGTAGCTCCTCCATGATGGTACTTATTGAGCAATATAAGTCAGAGAAGCTCTATCTCGAGAGTATATCTATGAAACATGTTGAGGCGTTGACTGCCTATACGGGTTCGTACAAGCAGTTAGAGTCGCTTCGTGATAGAGCACATAGTCTTAAGAAGCAGTTACTTGAGGTAGAGAAACAGGTGAAGCTTTGTGAGGCTGAGACCTCAGAGTTTGCAGCAAGTGTTCAAGAAGTTTCTGGTGAAATGGCGAAATCGCAGAAGAAAATGGTGGAGATAGCTGGGAAAGTAGCTAAGGAAGTGAGAGTTGACAAGCAAAGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
zf-CCHC zf-GRF

Protein Analysis

353

Amino Acids

38.62

Weight (kDa)

5.47

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_GRF PF06839 39 - 76 3.9e-07 GRF zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019607)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54930 AT1G54930 AT5G13920 AT5G13920
prunus_persica Prupe.3G314400_v2.0.a1
rosa_laevigata RLG00000022429
rosa_wichuraiana Rw2G055340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 5 cut(s) 84, 87, 90, 104, 530
AclWI GGATC 1 cut(s) 481
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 3 cut(s) 558, 759, 848
AfiI CCNNNNNNNGG 1 cut(s) 203
AflII CTTAAG 1 cut(s) 887
AflIII ACRYGT 1 cut(s) 814
AgsI TTSAA 6 cut(s) 214, 341, 352, 463, 667, 965
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 8 cut(s) 201, 359, 704, 744, 787, 925, 1016, 1028
AluI AGCT 8 cut(s) 201, 359, 704, 744, 787, 925, 1016, 1028
Alw21I GWGCWC 1 cut(s) 880
Alw26I GTCTC 4 cut(s) 484, 536, 593, 932
AlwI GGATC 1 cut(s) 481
AlwNI CAGNNNCTG 1 cut(s) 425
Ama87I CYCGRG 1 cut(s) 794
AoxI GGCC 4 cut(s) 37, 45, 624, 726
ApeKI GCWGC 3 cut(s) 92, 704, 953
Asp700I GAANNNNTTC 1 cut(s) 441
AspS9I GGNCC 2 cut(s) 45, 134
AsuHPI GGTGA 4 cut(s) 278, 728, 931, 989
AvaI CYCGRG 1 cut(s) 794
AvaII GGWCC 1 cut(s) 134
BaeI ACNNNNGTAYC 2 cut(s) 579, 612
Bbv12I GWGCWC 1 cut(s) 880
BbvI GCAGC 3 cut(s) 104, 691, 965
BccI CCATC 3 cut(s) 257, 296, 748
BceAI ACGGC 1 cut(s) 611
BciT130I CCWGG 1 cut(s) 36
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 4 cut(s) 484, 536, 593, 932
BfaI CTAG 2 cut(s) 366, 659
BfrI CTTAAG 1 cut(s) 887
BfuAI ACCTGC 1 cut(s) 446
BisI GCNGC 5 cut(s) 87, 90, 93, 705, 954
BlsI GCNGC 5 cut(s) 88, 91, 94, 706, 955
BmcAI AGTACT 1 cut(s) 558
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 794
BmgT120I GGNCC 2 cut(s) 45, 134
BmrFI CCNGG 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 517
BmuI ACTGGG 1 cut(s) 52
BplI GAGNNNNNCTC 4 cut(s) 281, 313, 625, 657
Bpu10I CCTNAGC 2 cut(s) 684, 1029
BpuEI CTTGAG 3 cut(s) 560, 576, 923
Bsa29I ATCGAT 1 cut(s) 440
BsaI GGTCTC 2 cut(s) 484, 932
BsaJI CCNNGG 1 cut(s) 723
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 4 cut(s) 321, 351, 590, 620
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 5 cut(s) 6, 47, 410, 419, 554
BseBI CCWGG 1 cut(s) 36
BseCI ATCGAT 1 cut(s) 440
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 6 cut(s) 153, 279, 656, 675, 927, 957
BseNI ACTGG 5 cut(s) 6, 47, 410, 419, 554
BseRI GAGGAG 1 cut(s) 736
BseXI GCAGC 3 cut(s) 104, 691, 965
BseYI CCCAGC 1 cut(s) 1016
BshFI GGCC 4 cut(s) 39, 47, 626, 728
BshVI ATCGAT 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 880
BsiHKCI CYCGRG 1 cut(s) 794
BsiSI CCGG 3 cut(s) 107, 132, 446
BslFI GGGAC 2 cut(s) 105, 479
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 4 cut(s) 484, 536, 593, 932
BsmBI CGTCTC 1 cut(s) 536
BsmFI GGGAC 2 cut(s) 105, 479
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 4 cut(s) 39, 47, 626, 728
Bso31I GGTCTC 2 cut(s) 484, 932
BsoBI CYCGRG 1 cut(s) 794
Bsp1286I GDGCHC 1 cut(s) 880
Bsp143I GATC 4 cut(s) 223, 466, 473, 655
BspACI CCGC 5 cut(s) 84, 87, 90, 104, 530
BspANI GGCC 4 cut(s) 39, 47, 626, 728
BspCNI CTCAG 6 cut(s) 154, 280, 655, 676, 928, 956
BspDI ATCGAT 1 cut(s) 440
BspMI ACCTGC 1 cut(s) 446
BspPI GGATC 1 cut(s) 481
BspTI CTTAAG 1 cut(s) 887
BspTNI GGTCTC 2 cut(s) 484, 932
BsrI ACTGG 5 cut(s) 6, 47, 410, 419, 554
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 4 cut(s) 223, 466, 473, 655
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 5 cut(s) 56, 119, 148, 427, 519
Bst6I CTCTTC 1 cut(s) 411
BstAFI CTTAAG 1 cut(s) 887
BstDEI CTNAG 7 cut(s) 162, 288, 642, 684, 936, 943, 1029
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 4 cut(s) 226, 469, 476, 658
BstMAI GTCTC 4 cut(s) 484, 536, 593, 932
BstMBI GATC 4 cut(s) 223, 466, 473, 655
BstMWI GCNNNNNNNGC 3 cut(s) 92, 623, 830
BstNI CCWGG 1 cut(s) 36
BstNSI RCATGY 2 cut(s) 195, 818
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 104, 691, 965
BstXI CCANNNNNNTGG 1 cut(s) 42
Bsu15I ATCGAT 1 cut(s) 440
BsuRI GGCC 4 cut(s) 39, 47, 626, 728
BsuTUI ATCGAT 1 cut(s) 440
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 7 cut(s) 13, 40, 115, 144, 417, 423, 515
BveI ACCTGC 1 cut(s) 446
CaiI CAGNNNCTG 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 45, 134
ClaI ATCGAT 1 cut(s) 440
Csp6I GTAC 3 cut(s) 557, 758, 847
CviAII CATG 4 cut(s) 192, 281, 751, 815
CviQI GTAC 3 cut(s) 557, 758, 847
DdeI CTNAG 7 cut(s) 162, 288, 642, 684, 936, 943, 1029
DpnI GATC 4 cut(s) 225, 468, 475, 657
DpnII GATC 4 cut(s) 223, 466, 473, 655
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 728
Eco31I GGTCTC 2 cut(s) 484, 932
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 794
EcoRII CCWGG 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 619
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 4 cut(s) 195, 284, 754, 818
FaqI GGGAC 2 cut(s) 105, 479
FatI CATG 4 cut(s) 191, 280, 750, 814
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 87, 90, 93, 705, 954
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 5 cut(s) 87, 90, 93, 705, 954
FspBI CTAG 2 cut(s) 366, 659
GluI GCNGC 5 cut(s) 87, 90, 93, 705, 954
GsaI CCCAGC 1 cut(s) 1020
HaeIII GGCC 4 cut(s) 39, 47, 626, 728
HapII CCGG 3 cut(s) 107, 132, 446
Hin1II CATG 4 cut(s) 195, 284, 754, 818
HincII GTYRAC 2 cut(s) 828, 1045
HindII GTYRAC 2 cut(s) 828, 1045
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 9 cut(s) 183, 246, 296, 352, 371, 415, 437, 442, 860
HpaII CCGG 3 cut(s) 107, 132, 446
HphI GGTGA 4 cut(s) 278, 728, 931, 989
Hpy166II GTNNAC 2 cut(s) 828, 1045
Hpy188I TCNGA 4 cut(s) 301, 645, 781, 946
Hpy188III TCNNGA 5 cut(s) 584, 794, 796, 869, 965
Hpy8I GTNNAC 2 cut(s) 828, 1045
HpyAV CCTTC 3 cut(s) 108, 507, 573
HpyCH4III ACNGT 5 cut(s) 56, 119, 148, 427, 519
HpyCH4V TGCA 4 cut(s) 126, 141, 617, 953
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 623, 830
HpyF3I CTNAG 7 cut(s) 162, 288, 642, 684, 936, 943, 1029
Hsp92II CATG 4 cut(s) 195, 284, 754, 818
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 4 cut(s) 223, 466, 473, 655
LmnI GCTCC 1 cut(s) 749
Lsp1109I GCAGC 3 cut(s) 104, 691, 965
LweI GCATC 1 cut(s) 517
MaeI CTAG 2 cut(s) 366, 659
MaeIII GTNAC 3 cut(s) 148, 421, 897
MalI GATC 4 cut(s) 225, 468, 475, 657
MboI GATC 4 cut(s) 223, 466, 473, 655
MboII GAAGA 2 cut(s) 398, 1009
MhlI GDGCHC 1 cut(s) 880
MluCI AATT 3 cut(s) 341, 347, 393
MlyI GAGTC 3 cut(s) 290, 380, 869
MmeI TCCRAC 2 cut(s) 273, 507
Mph1103I ATGCAT 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 3 cut(s) 252, 888, 1060
MspCI CTTAAG 1 cut(s) 887
MspI CCGG 3 cut(s) 107, 132, 446
MspR9I CCNGG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 3 cut(s) 92, 623, 830
NdeII GATC 4 cut(s) 223, 466, 473, 655
NlaIII CATG 4 cut(s) 195, 284, 754, 818
NmuCI GTSAC 2 cut(s) 148, 421
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 2 cut(s) 195, 818
PaeR7I CTCGAG 1 cut(s) 794
PceI AGGCCT 1 cut(s) 728
PciI ACATGT 1 cut(s) 814
PctI GAATGC 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 6 cut(s) 183, 246, 352, 415, 437, 442
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 5 cut(s) 88, 91, 94, 706, 955
PleI GAGTC 3 cut(s) 290, 379, 868
PpsI GAGTC 3 cut(s) 290, 379, 868
PscI ACATGT 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 1016
PspGI CCWGG 1 cut(s) 34
PspPI GGNCC 2 cut(s) 45, 134
PstNI CAGNNNCTG 1 cut(s) 425
RsaI GTAC 3 cut(s) 558, 759, 848
RsaNI GTAC 3 cut(s) 557, 758, 847
SaqAI TTAA 3 cut(s) 252, 888, 1060
SatI GCNGC 5 cut(s) 87, 90, 93, 705, 954
Sau3AI GATC 4 cut(s) 223, 466, 473, 655
Sau96I GGNCC 2 cut(s) 45, 134
ScaI AGTACT 1 cut(s) 558
SchI GAGTC 3 cut(s) 290, 380, 869
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 880
SfaNI GCATC 1 cut(s) 517
Sfr274I CTCGAG 1 cut(s) 794
SinI GGWCC 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 794
SmlI CTYRAG 5 cut(s) 539, 591, 794, 887, 902
SmoI CTYRAG 5 cut(s) 539, 591, 794, 887, 902
Sse9I AATT 3 cut(s) 341, 347, 393
SseBI AGGCCT 1 cut(s) 728
SsiI CCGC 5 cut(s) 84, 87, 90, 104, 530
SspMI CTAG 2 cut(s) 366, 659
StuI AGGCCT 1 cut(s) 728
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 5 cut(s) 56, 119, 148, 427, 519
TaqI TCGA 2 cut(s) 440, 795
TaqII GACCGA 1 cut(s) 466
TasI AATT 3 cut(s) 341, 347, 393
TatI WGTACW 1 cut(s) 556
TauI GCSGC 2 cut(s) 89, 92
TfiI GAWTC 6 cut(s) 183, 246, 352, 415, 437, 442
Tru1I TTAA 3 cut(s) 252, 888, 1060
Tru9I TTAA 3 cut(s) 252, 888, 1060
TscAI CASTG 7 cut(s) 13, 47, 122, 151, 417, 430, 522
TseFI GTSAC 2 cut(s) 148, 421
TseI GCWGC 3 cut(s) 92, 704, 953
Tsp45I GTSAC 2 cut(s) 148, 421
TspDTI ATGAA 4 cut(s) 297, 351, 489, 824
TspRI CASTG 7 cut(s) 13, 47, 122, 151, 417, 430, 522
Van91I CCANNNNNTGG 1 cut(s) 203
Vha464I CTTAAG 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 134
XceI RCATGY 2 cut(s) 195, 818
XhoI CTCGAG 1 cut(s) 794
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 2 cut(s) 366, 659
ZrmI AGTACT 1 cut(s) 558
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.