AT5G13920

GRF zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0019607
Physical Location & Seq
Reverse (-)
4485626 .. 4487526
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13920.1

Sequence Viewer

Length: 1248 bp
ATGCTTAACGGCACAATGCAGACCGGAGATTGCTTCCGATGCCGTCAGGCTGGCCACTGGATCAACGATTGTCCTCTCAAATCCTACACCGATGATCCTCCACCGGCGATCCAATGCCCATGCGGCGGAGGTTTCTGTGAAATCAAGGTCGCGAATACTCGAGAAAATCCCGGAAGGAAGTTCTACAAGTGTCCAACGGCTCAGAATTGCTGTTTCTTCAAATGGTGTGACAAAGTAACCGACGAAGATATCAAATTCCGTCCTGCCTTCACCATCCCGATTTGTTCCTGCGGTGCTGGACCTTGCCGGAGAGTTAAAGACGTTTCCGGTAGAGCTTACCTGATATGCTGCATCAAAAAGGGATTTGGAGCTTGTGGATTCTTCAAGTGGGAAGATGTTGAGATGATTCCTAGTTGTGATGTTATGGATGAGATTGATTTTTGGGTTGAAGCTGATCAAATTTTGAGTGATGTTGAGAGTAGCTTACAGGCTCGTGGTGGTGTTATACCGGAAATTGCAAACCAAATGGCATCAGAGAAAGAATGTCAAGCTTCTGTTAGTGGTATAGAGGATGATTGTGTAGTAGAATGTCAAGATTCTGTTAGTGCAGAGGATGATTCTACATTAGAAAATTTGGATTCCATTTCAATGTCTGTTTCTGATGTACACTCTACTGCTCTGAACCAAGGTATCTCTCTGTTTGATCCGGTTACGAGCGAACCTGAAGAGCCATGGAAAAAGACTCAGAATGGTGATCAGCCAACAAATAGTGCTCTTTCTAAGTTGAGTGTGGATGAAGCGATGAGTGATTTGATCAGAGATACGGTCTCTAGTGGTTCTGTTGTGATACATGGAAGGACAAACCATGAGCAACCTGAAATTGATGGAGCTGAGTGGTCATTCCCTTGCTTGCAGAACCTAATTGATCAGTACAACTCAGAGAAGCTTCAATTGGAGAGTATTTCAGGGAAACATGTACAAATGTTGAGTGAATTTATGGCTTCGTACAGGCGACTAAGGTTACTTCATGAGAAAACTAGTCATCTCAGGAAAACTTTACTTGAAACAGAGAAGGAGATGGTTTGTTGTGAAGCTGAGACATTAAAATTTGGAGCAAGTTGCAGGGAAGTGGCTGGAGAAATGGCTGAGTCTCAGAAGAGGATGCAGGAAACTGCAGATAAACTAGGAAAAGAAGTAGAAGTGTTTAAGCAAAATGAGTTTGTTGGTCTAAAGAGAAGAAGAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
zf-CCHC zf-CCHC_2 zf-GRF

Protein Analysis

415

Amino Acids

46.31

Weight (kDa)

4.86

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_GRF PF06839 38 - 78 1.2e-15 GRF zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019607)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54930 AT1G54930 AT5G13920 AT5G13920
prunus_persica Prupe.3G314400_v2.0.a1
rosa_laevigata RLG00000022429
rosa_wichuraiana Rw2G055340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 152
AciI CCGC 3 cut(s) 123, 126, 291
AclWI GGATC 4 cut(s) 68, 89, 103, 698
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 5 cut(s) 254, 459, 631, 992, 1106
AcuI CTGAAG 1 cut(s) 744
AfaI GTAC 4 cut(s) 666, 932, 978, 1007
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 973
AgsI TTSAA 6 cut(s) 220, 385, 449, 648, 950, 1064
AhlI ACTAGT 1 cut(s) 1037
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AluBI AGCT 8 cut(s) 335, 371, 452, 483, 551, 890, 946, 1094
AluI AGCT 8 cut(s) 335, 371, 452, 483, 551, 890, 946, 1094
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 3 cut(s) 832, 1091, 1155
AlwI GGATC 4 cut(s) 68, 89, 103, 698
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 5 cut(s) 254, 459, 631, 992, 1106
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 262, 764
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 299
BaeI ACNNNNGTAYC 2 cut(s) 673, 706
BalI TGGCCA 1 cut(s) 54
BauI CACGAG 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 775
BbvI GCAGC 1 cut(s) 335
BccI CCATC 3 cut(s) 281, 878, 1072
BceAI ACGGC 3 cut(s) 25, 27, 213
BclI TGATCA 4 cut(s) 454, 754, 813, 925
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 3 cut(s) 832, 1091, 1155
BcuI ACTAGT 1 cut(s) 1037
BfaI CTAG 4 cut(s) 411, 831, 1038, 1184
BfmI CTRYAG 1 cut(s) 1173
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 2 cut(s) 124, 349
BlsI GCNGC 2 cut(s) 125, 350
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 299
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 4 cut(s) 29, 360, 539, 1152
BpmI CTGGAG 1 cut(s) 1155
BpuMI CCSGG 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 832
BsaJI CCNNGG 2 cut(s) 685, 731
BsaWI WCCGGW 4 cut(s) 23, 326, 508, 706
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 62
BseDI CCNNGG 2 cut(s) 685, 731
BseGI GGATG 6 cut(s) 273, 433, 577, 619, 799, 1167
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 8 cut(s) 215, 758, 882, 951, 1060, 1086, 1137, 1166
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 775
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 7 cut(s) 24, 104, 171, 307, 327, 509, 707
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 3 cut(s) 832, 1091, 1155
BsnI GGCC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 832
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 775
Bsp1407I TGTACA 2 cut(s) 664, 976
Bsp143I GATC 8 cut(s) 60, 94, 108, 454, 703, 754, 813, 925
Bsp19I CCATGG 1 cut(s) 731
Bsp68I TCGCGA 1 cut(s) 152
BspACI CCGC 3 cut(s) 123, 126, 291
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 8 cut(s) 214, 757, 883, 950, 1059, 1087, 1138, 1165
BspFNI CGCG 1 cut(s) 152
BspHI TCATGA 1 cut(s) 1027
BspMAI CTGCAG 1 cut(s) 1177
BspPI GGATC 4 cut(s) 68, 89, 103, 698
BspQI GCTCTTC 1 cut(s) 720
BspTNI GGTCTC 1 cut(s) 832
BsrFI RCCGGY 1 cut(s) 103
BsrGI TGTACA 2 cut(s) 664, 976
BsrI ACTGG 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 685, 731
BssMI GATC 8 cut(s) 60, 94, 108, 454, 703, 754, 813, 925
BssSI CACGAG 1 cut(s) 492
BssT1I CCWWGG 2 cut(s) 685, 731
Bst2BI CACGAG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 826
Bst6I CTCTTC 2 cut(s) 720, 1151
BstAUI TGTACA 2 cut(s) 664, 976
BstC8I GCNNGC 2 cut(s) 52, 911
BstDSI CCRYGG 1 cut(s) 731
BstF5I GGATG 6 cut(s) 273, 433, 577, 619, 799, 1167
BstFNI CGCG 1 cut(s) 152
BstKTI GATC 8 cut(s) 63, 97, 111, 457, 706, 757, 816, 928
BstMAI GTCTC 3 cut(s) 832, 1091, 1155
BstMBI GATC 8 cut(s) 60, 94, 108, 454, 703, 754, 813, 925
BstMWI GCNNNNNNNGC 2 cut(s) 39, 123
BstNSI RCATGY 1 cut(s) 977
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 1173
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 335
BsuRI GGCC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 731
BtgZI GCGATG 1 cut(s) 815
BtsCI GGATG 6 cut(s) 273, 433, 577, 619, 799, 1167
BtsIMutI CAGTG 1 cut(s) 55
BtuMI TCGCGA 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 52, 911
CciI TCATGA 1 cut(s) 1027
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 4 cut(s) 665, 931, 977, 1006
CviAII CATG 6 cut(s) 120, 732, 851, 866, 974, 1028
CviQI GTAC 4 cut(s) 665, 931, 977, 1006
DpnI GATC 8 cut(s) 62, 96, 110, 456, 705, 756, 815, 927
DpnII GATC 8 cut(s) 60, 94, 108, 454, 703, 754, 813, 925
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 2 cut(s) 720, 1151
EarI CTCTTC 2 cut(s) 720, 1151
EciI GGCGGA 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 685, 731
Eco31I GGTCTC 1 cut(s) 832
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 744
Eco88I CYCGRG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 685, 731
ErhI CCWWGG 2 cut(s) 685, 731
FaeI CATG 6 cut(s) 123, 735, 854, 869, 977, 1031
FatI CATG 6 cut(s) 119, 731, 850, 865, 973, 1027
FbaI TGATCA 4 cut(s) 454, 754, 813, 925
Fnu4HI GCNGC 2 cut(s) 124, 349
FokI GGATG 6 cut(s) 260, 440, 584, 626, 806, 1174
Fsp4HI GCNGC 2 cut(s) 124, 349
FspBI CTAG 4 cut(s) 411, 831, 1038, 1184
GluI GCNGC 2 cut(s) 124, 349
GsuI CTGGAG 1 cut(s) 1155
HaeIII GGCC 1 cut(s) 54
HapII CCGG 7 cut(s) 24, 104, 171, 307, 327, 509, 707
Hin1II CATG 6 cut(s) 123, 735, 854, 869, 977, 1031
HindIII AAGCTT 2 cut(s) 549, 944
HinfI GANTC 7 cut(s) 378, 406, 596, 617, 638, 742, 1148
HpaII CCGG 7 cut(s) 24, 104, 171, 307, 327, 509, 707
HphI GGTGA 2 cut(s) 262, 764
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 9 cut(s) 38, 204, 535, 661, 681, 747, 818, 940, 1155
Hpy188III TCNNGA 6 cut(s) 151, 161, 277, 593, 1028, 1048
Hpy8I GTNNAC 1 cut(s) 667
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 4 cut(s) 168, 277, 849, 1066
HpyCH4III ACNGT 1 cut(s) 826
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 8 cut(s) 19, 351, 518, 608, 913, 1122, 1165, 1175
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 123
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 6 cut(s) 123, 735, 854, 869, 977, 1031
Ksp22I TGATCA 4 cut(s) 454, 754, 813, 925
Kzo9I GATC 8 cut(s) 60, 94, 108, 454, 703, 754, 813, 925
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 3 cut(s) 368, 887, 1112
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 4 cut(s) 29, 360, 539, 1152
MaeI CTAG 4 cut(s) 411, 831, 1038, 1184
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 4 cut(s) 227, 235, 709, 1020
MalI GATC 8 cut(s) 62, 96, 110, 456, 705, 756, 815, 927
MboI GATC 8 cut(s) 60, 94, 108, 454, 703, 754, 813, 925
MboII GAAGA 7 cut(s) 208, 257, 373, 404, 737, 1168, 1248
MfeI CAATTG 1 cut(s) 950
MhlI GDGCHC 1 cut(s) 775
MlsI TGGCCA 1 cut(s) 54
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 2 cut(s) 736, 1157
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 6 cut(s) 84, 108, 122, 562, 604, 1152
Mox20I TGGCCA 1 cut(s) 54
MscI TGGCCA 1 cut(s) 54
MseI TTAA 4 cut(s) 6, 315, 1103, 1206
MslI CAYNNNNRTG 1 cut(s) 647
Msp20I TGGCCA 1 cut(s) 54
MspI CCGG 7 cut(s) 24, 104, 171, 307, 327, 509, 707
MspR9I CCNGG 1 cut(s) 171
MunI CAATTG 1 cut(s) 950
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 39, 123
NciI CCSGG 1 cut(s) 171
NcoI CCATGG 1 cut(s) 731
NdeII GATC 8 cut(s) 60, 94, 108, 454, 703, 754, 813, 925
NlaIII CATG 6 cut(s) 123, 735, 854, 869, 977, 1031
NmuCI GTSAC 1 cut(s) 227
NruI TCGCGA 1 cut(s) 152
NspI RCATGY 1 cut(s) 977
PaeR7I CTCGAG 1 cut(s) 159
PagI TCATGA 1 cut(s) 1027
PciI ACATGT 1 cut(s) 973
PciSI GCTCTTC 1 cut(s) 720
PfeI GAWTC 5 cut(s) 378, 406, 596, 617, 638
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 2 cut(s) 125, 350
PleI GAGTC 2 cut(s) 736, 1156
PpsI GAGTC 2 cut(s) 736, 1156
PscI ACATGT 1 cut(s) 973
PspPI GGNCC 1 cut(s) 299
PstI CTGCAG 1 cut(s) 1177
RruI TCGCGA 1 cut(s) 152
RsaI GTAC 4 cut(s) 666, 932, 978, 1007
RsaNI GTAC 4 cut(s) 665, 931, 977, 1006
RseI CAYNNNNRTG 1 cut(s) 647
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 4 cut(s) 6, 315, 1103, 1206
SatI GCNGC 2 cut(s) 124, 349
Sau3AI GATC 8 cut(s) 60, 94, 108, 454, 703, 754, 813, 925
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 2 cut(s) 736, 1157
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 775
SfaNI GCATC 4 cut(s) 29, 360, 539, 1152
SfcI CTRYAG 1 cut(s) 1173
Sfr274I CTCGAG 1 cut(s) 159
SgrAI CRCCGGYG 1 cut(s) 103
SinI GGWCC 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
SpeI ACTAGT 1 cut(s) 1037
SsiI CCGC 3 cut(s) 123, 126, 291
SspMI CTAG 4 cut(s) 411, 831, 1038, 1184
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 2 cut(s) 685, 731
TaaI ACNGT 1 cut(s) 826
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 160
TatI WGTACW 3 cut(s) 664, 930, 976
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 5 cut(s) 378, 406, 596, 617, 638
Tru1I TTAA 4 cut(s) 6, 315, 1103, 1206
Tru9I TTAA 4 cut(s) 6, 315, 1103, 1206
TscAI CASTG 1 cut(s) 62
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 348
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 810, 1016
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 5 cut(s) 254, 459, 631, 992, 1106
XceI RCATGY 1 cut(s) 977
XhoI CTCGAG 1 cut(s) 159
XspI CTAG 4 cut(s) 411, 831, 1038, 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.