RLG00000022429

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019607
Physical Location & Seq
Forward (+)
83270761 .. 83271935
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022429

Sequence Viewer

Length: 330 bp
ATGGAGGCACTTGAGCAAGCAGCTTTGCCTATTCAGAATCTGCTAGTCACTCTTCTTGAGTCAATATTGGATCTGCTTGAGCATGAATCCATGACAAGGGCAGTACTGGATTGCACTTCTCCTACTTTGGACCTTCTCTCAGTTGACTCTTGGGCATTTATCTTAGCAATAGAATTTCAGAGTAGACAAAGCAAAATCGTATCAGAAGAGTGTGATGGTGATGGCAGCTTCTTCTTTCCTGATATCGCTGGCTATCAGTGGCCATCTCAAAGTGAAGACAGAAGAGCAATGAGGAATCATATACGTTGGGTAATTAGGTTTTCGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
zf-CCHC zf-CCHC_2 zf-GRF

Protein Analysis

110

Amino Acids

12.47

Weight (kDa)

4.43

Isoelectric Point (pI)

74.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019607)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54930 AT1G54930 AT5G13920 AT5G13920
prunus_persica Prupe.3G314400_v2.0.a1
rosa_laevigata RLG00000022429
rosa_wichuraiana Rw2G055340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 184
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 96
AluBI AGCT 2 cut(s) 23, 228
AluI AGCT 2 cut(s) 23, 228
AlwI GGATC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 40
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 20, 225
ApoI RAATTY 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 32, 237
BccI CCATC 3 cut(s) 209, 215, 271
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 326
BisI GCNGC 2 cut(s) 21, 226
BlsI GCNGC 2 cut(s) 22, 227
BmcAI AGTACT 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 282
BpuEI CTTGAG 3 cut(s) 32, 77, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 32, 237
BshFI GGCC 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 96
BsnI GGCC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 70
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 152
BspPI GGATC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 111
BssMI GATC 1 cut(s) 70
Bst6I CTCTTC 3 cut(s) 57, 201, 277
BstC8I GCNNGC 2 cut(s) 18, 250
BstDEI CTNAG 2 cut(s) 139, 163
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 32, 237
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 18, 250
CaiI CAGNNNCTG 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 104
CviAII CATG 2 cut(s) 83, 91
CviJI RGCY 4 cut(s) 23, 228, 252, 262
CviKI_1 RGCY 4 cut(s) 23, 228, 252, 262
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 2 cut(s) 139, 163
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 3 cut(s) 57, 201, 277
EarI CTCTTC 3 cut(s) 57, 201, 277
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 130
EcoRV GATATC 1 cut(s) 244
FaeI CATG 2 cut(s) 86, 94
FaiI YATR 5 cut(s) 84, 92, 300, 302, 328
FatI CATG 2 cut(s) 82, 90
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 21, 226
Fsp4HI GCNGC 2 cut(s) 21, 226
FspBI CTAG 1 cut(s) 44
GluI GCNGC 2 cut(s) 21, 226
HaeIII GGCC 1 cut(s) 262
Hin1II CATG 2 cut(s) 86, 94
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 5 cut(s) 37, 59, 86, 146, 295
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 2 cut(s) 145, 185
Hpy188I TCNGA 3 cut(s) 36, 180, 205
Hpy188III TCNNGA 2 cut(s) 56, 239
Hpy8I GTNNAC 2 cut(s) 145, 185
HpyAV CCTTC 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 1 cut(s) 114
HpyF3I CTNAG 2 cut(s) 139, 163
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 2 cut(s) 86, 94
Kzo9I GATC 1 cut(s) 70
LguI GCTCTTC 1 cut(s) 277
LpnPI CCDG 3 cut(s) 92, 234, 252
Lsp1109I GCAGC 2 cut(s) 32, 237
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 5 cut(s) 44, 218, 223, 287, 294
MflI RGATCY 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 262
MluCI AATT 2 cut(s) 173, 312
MluNI TGGCCA 1 cut(s) 262
MlyI GAGTC 2 cut(s) 68, 140
MnlI CCTC 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 262
MscI TGGCCA 1 cut(s) 262
Msp20I TGGCCA 1 cut(s) 262
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 86, 94
NmuCI GTSAC 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 277
PfeI GAWTC 3 cut(s) 37, 86, 295
PkrI GCNGC 2 cut(s) 22, 227
PleI GAGTC 2 cut(s) 67, 140
PpsI GAGTC 2 cut(s) 67, 140
PspPI GGNCC 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 277
SatI GCNGC 2 cut(s) 21, 226
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 130
ScaI AGTACT 1 cut(s) 105
SchI GAGTC 2 cut(s) 68, 140
SetI ASST 5 cut(s) 25, 135, 230, 307, 320
SfcI CTRYAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 130
SmlI CTYRAG 3 cut(s) 11, 56, 77
SmoI CTYRAG 3 cut(s) 11, 56, 77
Sse9I AATT 2 cut(s) 173, 312
SspI AATATT 1 cut(s) 66
SspMI CTAG 1 cut(s) 44
TaiI ACGT 1 cut(s) 307
TasI AATT 2 cut(s) 173, 312
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 3 cut(s) 37, 86, 295
TscAI CASTG 1 cut(s) 263
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 20, 225
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 99
TspRI CASTG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.