Rw2G055340

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
82757028 .. 82757682
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G055340.1

Sequence Viewer

Length: 234 bp
ATGCCATCAAAGAGAGTTGGAAGTTGGGCCTTTGGCACAGTAAAAGAGTGTGATGGTGATGGTGACGGTGACGGTGACGGTGATGGCAGCTTCTTCTTTCCTGATATCGCTGGCTATCAGTGGCCATCTCAAAGTGAAGACAGAAGAGCAATGAGCTCCACCATAGCCAAATTGCCCTCTCCTTATCTTAATTCTGGGAATCATATACGTTGGGTAATTAGGTTTTCGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.47

Weight (kDa)

5.07

Isoelectric Point (pI)

77.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019607)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54930 AT1G54930 AT5G13920 AT5G13920
prunus_persica Prupe.3G314400_v2.0.a1
rosa_laevigata RLG00000022429
rosa_wichuraiana Rw2G055340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 122
AluBI AGCT 2 cut(s) 90, 156
AluI AGCT 2 cut(s) 90, 156
Alw21I GWGCWC 1 cut(s) 158
AoxI GGCC 2 cut(s) 27, 122
ApeKI GCWGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 5 cut(s) 68, 74, 80, 86, 92
BalI TGGCCA 1 cut(s) 124
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 99
BccI CCATC 5 cut(s) 13, 47, 53, 77, 133
BfmI CTRYAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 99
BshFI GGCC 2 cut(s) 29, 124
BsiHKAI GWGCWC 1 cut(s) 158
BsnI GGCC 2 cut(s) 29, 124
Bsp1286I GDGCHC 1 cut(s) 158
BspANI GGCC 2 cut(s) 29, 124
BspQI GCTCTTC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 156
Bst4CI ACNGT 4 cut(s) 40, 68, 74, 80
Bst6I CTCTTC 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 144
BsuRI GGCC 2 cut(s) 29, 124
BtsIMutI CAGTG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 27
CviJI RGCY 6 cut(s) 29, 90, 114, 124, 156, 167
CviKI_1 RGCY 6 cut(s) 29, 90, 114, 124, 156, 167
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 158
Eco32I GATATC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 156
EcoRV GATATC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 158
FaiI YATR 4 cut(s) 164, 204, 206, 232
Fnu4HI GCNGC 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 88
HaeIII GGCC 2 cut(s) 29, 124
HinfI GANTC 1 cut(s) 199
HphI GGTGA 5 cut(s) 68, 74, 80, 86, 92
Hpy188III TCNNGA 1 cut(s) 101
HpyCH4III ACNGT 4 cut(s) 40, 68, 74, 80
HpyCH4IV ACGT 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 208
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 3 cut(s) 96, 114, 180
Lsp1109I GCAGC 1 cut(s) 99
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 3 cut(s) 62, 68, 74
MboII GAAGA 3 cut(s) 85, 149, 156
MhlI GDGCHC 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 3 cut(s) 170, 190, 216
MluNI TGGCCA 1 cut(s) 124
MnlI CCTC 1 cut(s) 187
Mox20I TGGCCA 1 cut(s) 124
MscI TGGCCA 1 cut(s) 124
MseI TTAA 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 124
NmuCI GTSAC 3 cut(s) 62, 68, 74
PciSI GCTCTTC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 27
SacI GAGCTC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 27
SduI GDGCHC 1 cut(s) 158
SetI ASST 4 cut(s) 92, 158, 211, 224
SfcI CTRYAG 1 cut(s) 230
SgeI CNNG 3 cut(s) 113, 123, 207
Sse9I AATT 3 cut(s) 170, 190, 216
SstI GAGCTC 1 cut(s) 158
TaaI ACNGT 4 cut(s) 40, 68, 74, 80
TaiI ACGT 1 cut(s) 211
TasI AATT 3 cut(s) 170, 190, 216
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 125
TseFI GTSAC 3 cut(s) 62, 68, 74
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 3 cut(s) 62, 68, 74
TspRI CASTG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.