AT1G58100
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0021001
Physical Location & Seq
Reverse (-)
21512332 .. 21514189
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58100.2

Sequence Viewer

Length: 1206 bp
ATGGATCTCTCCGACATCCGAAACAACAACAACGACACCGCCGCCGTCGCCACCGGAGGAGGAGCAAGACAGCTAGTTGACGCATCTCTCTCAATCGTTCCCAGATCTACACCTCCCGAAGACTCAACACTCGCAACAACCTCATCTACGGCAACGGCGACTACAACGAAGCGGTCGACTAAAGACCGTCACACGAAAGTCGACGGAAGAGGACGTCGGATTCGTATGCCGGCGCTATGTGCAGCTAGAGTTTTTCAGTTAACGAGAGAGTTAGGTCATAAATCCGATGGTGAAACTATTGAATGGCTTCTTCAACAAGCTGAGCCAGCTATTGTTGCTGCTACAGGTACAGGAACTATTCCGGCGAACTTCTCTACTTTAAGTGTTTCGTTACGAAGTAGTGGATCGACTCTCTCTGCTCCGCCGTCGAAATCGGTGCCGCTTTACGGTGCTCTTGGATTGACTCATCATCAGTATGATGAACAAGGAGGCGGCGGTGTGTTTGCTGCTCATACGTCGCCGCTTTTAGGGTTTCATCATCAGCTTCAACACCACCAGAACCAGAATCAGAATCAAGATCCGGTGGAAACTATTCCTGAAGGTGAGAATTTCTCTAGGAAACGGTATAGATCGGTTGATTTGTCTAAAGAAAACGATGATCGGAAACAGAACGAGAATAAATCTTTGAAAGAAAGTGAAACGTCGGGTCCTACGGCGGCGCCGATGTGGGCGGTTGCGCCGCCGAGTAGGTCTGGTGCTGGGAACACTTTTTGGATGCTTCCGGTACCGACAACGGCCGGTAATCAAATGGAGAGTAGTAGCAACAATAACACCGCCGCAGGCCACCGTGCTCCTCCTATGTGGCCATTTGTGAACTCTGCTGGAGGAGGAGCGGGAGGTGGAGGCGGAGCAGCGACTCACTTTATGGCGGGAACGGGGTTTAGTTTTCCGATGGATCAGTACAGAGGAAGTCCACTTCAGTTAGGTTCTTTTTTAGCTCAGCCGCAGCCGACTCAGAACTTAGGACTAAGTATGCCGGACTCGAATCTCGGGATGTTAGCCGCTTTGAACTCGGCTTATTCAAGAGGCGGAAACGCAAACGCGAATGCGGAACAAGCGAACAATGCGGTGGAGCATCAAGAGAAGCAGCAACAGAGTGATCATGATGATGATAGTAGAGAGGAGAACTCAAATAGCTCTGAGTGA

Protein Analysis

401

Amino Acids

42.47

Weight (kDa)

6.01

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 59 - 92 2.9e-12 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021001)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58100 AT1G58100
malus_domestica MD08G1240000.v1.1 MD15G1431700.v1.1
prunus_persica Prupe.1G576500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 217
Acc65I GGTACC 1 cut(s) 784
AccB1I GGYRCC 3 cut(s) 436, 718, 784
AccBSI CCGCTC 1 cut(s) 893
AccI GTMKAC 2 cut(s) 176, 201
AccII CGCG 1 cut(s) 1103
AclWI GGATC 4 cut(s) 12, 412, 572, 963
AcoI YGGCCR 2 cut(s) 795, 863
AcsI RAATTY 1 cut(s) 607
AcuI CTGAAG 2 cut(s) 618, 962
AcyI GRCGYC 2 cut(s) 214, 719
AfaI GTAC 3 cut(s) 349, 786, 962
AfiI CCNNNNNNNGG 2 cut(s) 446, 527
AgsI TTSAA 6 cut(s) 302, 314, 548, 688, 1069, 1083
AluBI AGCT 7 cut(s) 73, 245, 320, 329, 544, 998, 1197
AluI AGCT 7 cut(s) 73, 245, 320, 329, 544, 998, 1197
Alw21I GWGCWC 2 cut(s) 454, 853
AlwI GGATC 4 cut(s) 12, 412, 572, 963
Ama87I CYCGRG 1 cut(s) 1049
AoxI GGCC 3 cut(s) 795, 841, 863
ApeKI GCWGC 6 cut(s) 242, 338, 506, 911, 1006, 1147
ApoI RAATTY 1 cut(s) 607
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
Asp700I GAANNNNTTC 2 cut(s) 306, 591
Asp718I GGTACC 1 cut(s) 784
AspLEI GCGC 3 cut(s) 235, 721, 739
AspS9I GGNCC 1 cut(s) 707
AsuHPI GGTGA 2 cut(s) 302, 614
AvaI CYCGRG 1 cut(s) 1049
AvaII GGWCC 1 cut(s) 707
BalI TGGCCA 1 cut(s) 865
BanI GGYRCC 3 cut(s) 436, 718, 784
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 454, 853
BbvI GCAGC 6 cut(s) 254, 325, 493, 923, 1018, 1159
BccI CCATC 2 cut(s) 281, 946
BceAI ACGGC 6 cut(s) 29, 165, 171, 409, 729, 810
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BclI TGATCA 1 cut(s) 1159
BfaI CTAG 3 cut(s) 74, 246, 615
BfmI CTRYAG 1 cut(s) 342
BfoI RGCGCY 2 cut(s) 236, 722
BglII AGATCT 1 cut(s) 104
BlpI GCTNAGC 2 cut(s) 321, 999
Bme18I GGWCC 1 cut(s) 707
BmeT110I CYCGRG 1 cut(s) 1049
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 4 cut(s) 438, 708, 720, 786
BmsI GCATC 3 cut(s) 92, 765, 1144
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 4 cut(s) 596, 628, 1172, 1204
BpmI CTGGAG 1 cut(s) 903
Bpu1102I GCTNAGC 2 cut(s) 321, 999
BsaHI GRCGYC 2 cut(s) 214, 719
BsaWI WCCGGW 3 cut(s) 53, 580, 781
Bsc4I CCNNNNNNNGG 2 cut(s) 446, 527
Bse118I RCCGGY 2 cut(s) 229, 797
BseGI GGATG 3 cut(s) 15, 780, 1059
BseLI CCNNNNNNNGG 2 cut(s) 446, 527
BseMII CTCAG 4 cut(s) 312, 1013, 1028, 1191
BseRI GAGGAG 6 cut(s) 72, 75, 843, 900, 903, 1196
BseX3I CGGCCG 1 cut(s) 795
BseXI GCAGC 6 cut(s) 254, 325, 493, 923, 1018, 1159
BseYI CCCAGC 1 cut(s) 758
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 1103
Bsh1285I CGRYCG 2 cut(s) 176, 798
BshFI GGCC 3 cut(s) 797, 843, 865
BshNI GGYRCC 3 cut(s) 436, 718, 784
BsiEI CGRYCG 2 cut(s) 176, 798
BsiHKAI GWGCWC 2 cut(s) 454, 853
BsiHKCI CYCGRG 1 cut(s) 1049
BsiSI CCGG 7 cut(s) 54, 230, 362, 581, 782, 798, 1037
BslI CCNNNNNNNGG 2 cut(s) 446, 527
BsmI GAATGC 1 cut(s) 1111
BsnI GGCC 3 cut(s) 797, 843, 865
BsoBI CYCGRG 1 cut(s) 1049
Bsp1286I GDGCHC 2 cut(s) 454, 853
Bsp143I GATC 8 cut(s) 4, 104, 404, 577, 629, 658, 955, 1159
Bsp1720I GCTNAGC 2 cut(s) 321, 999
BspANI GGCC 3 cut(s) 797, 843, 865
BspCNI CTCAG 4 cut(s) 313, 1012, 1027, 1192
BspFNI CGCG 1 cut(s) 1103
BspHI TCATGA 1 cut(s) 1162
BspLI GGNNCC 4 cut(s) 438, 708, 720, 786
BspPI GGATC 4 cut(s) 12, 412, 572, 963
BspT107I GGYRCC 3 cut(s) 436, 718, 784
BsrBI CCGCTC 1 cut(s) 893
BsrFI RCCGGY 2 cut(s) 229, 797
BssAI RCCGGY 2 cut(s) 229, 797
BssMI GATC 8 cut(s) 4, 104, 404, 577, 629, 658, 955, 1159
BssNI GRCGYC 2 cut(s) 214, 719
Bst4CI ACNGT 4 cut(s) 188, 449, 624, 848
Bst6I CTCTTC 1 cut(s) 202
BstACI GRCGYC 2 cut(s) 214, 719
BstC8I GCNNGC 3 cut(s) 231, 327, 841
BstDEI CTNAG 6 cut(s) 321, 999, 1014, 1021, 1028, 1200
BstF5I GGATG 3 cut(s) 15, 780, 1059
BstFNI CGCG 1 cut(s) 1103
BstH2I RGCGCY 2 cut(s) 236, 722
BstHHI GCGC 3 cut(s) 235, 721, 739
BstKTI GATC 8 cut(s) 7, 107, 407, 580, 632, 661, 958, 1162
BstMBI GATC 8 cut(s) 4, 104, 404, 577, 629, 658, 955, 1159
BstMCI CGRYCG 2 cut(s) 176, 798
BstMWI GCNNNNNNNGC 6 cut(s) 47, 239, 326, 335, 1115, 1124
BstSFI CTRYAG 1 cut(s) 342
BstUI CGCG 1 cut(s) 1103
BstV1I GCAGC 6 cut(s) 254, 325, 493, 923, 1018, 1159
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 3 cut(s) 4, 104, 577
BstYI RGATCY 3 cut(s) 4, 104, 577
BstZI CGGCCG 1 cut(s) 795
BsuRI GGCC 3 cut(s) 797, 843, 865
BtsCI GGATG 3 cut(s) 15, 780, 1059
Cac8I GCNNGC 3 cut(s) 231, 327, 841
CciI TCATGA 1 cut(s) 1162
CfoI GCGC 3 cut(s) 235, 721, 739
Cfr10I RCCGGY 2 cut(s) 229, 797
Cfr13I GGNCC 1 cut(s) 707
CseI GACGC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 348, 785, 961
CviAII CATG 1 cut(s) 1163
CviQI GTAC 3 cut(s) 348, 785, 961
DdeI CTNAG 6 cut(s) 321, 999, 1014, 1021, 1028, 1200
DinI GGCGCC 1 cut(s) 720
DpnI GATC 8 cut(s) 6, 106, 406, 579, 631, 660, 957, 1161
DpnII GATC 8 cut(s) 4, 104, 404, 577, 629, 658, 955, 1159
EaeI YGGCCR 2 cut(s) 795, 863
EagI CGGCCG 1 cut(s) 795
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
EciI GGCGGA 3 cut(s) 411, 921, 1104
EclXI CGGCCG 1 cut(s) 795
Eco47I GGWCC 1 cut(s) 707
Eco52I CGGCCG 1 cut(s) 795
Eco57I CTGAAG 2 cut(s) 618, 962
Eco88I CYCGRG 1 cut(s) 1049
EcoO109I RGGNCCY 1 cut(s) 707
EgeI GGCGCC 1 cut(s) 720
EheI GGCGCC 1 cut(s) 720
FaeI CATG 1 cut(s) 1166
FatI CATG 1 cut(s) 1162
FauI CCCGC 2 cut(s) 886, 922
FbaI TGATCA 1 cut(s) 1159
FblI GTMKAC 2 cut(s) 176, 201
FokI GGATG 3 cut(s) 2, 787, 1066
FspBI CTAG 3 cut(s) 74, 246, 615
GlaI GCGC 3 cut(s) 234, 720, 738
GsaI CCCAGC 1 cut(s) 762
GsuI CTGGAG 1 cut(s) 903
HaeII RGCGCY 2 cut(s) 236, 722
HaeIII GGCC 3 cut(s) 797, 843, 865
HapII CCGG 7 cut(s) 54, 230, 362, 581, 782, 798, 1037
HgaI GACGC 1 cut(s) 89
HhaI GCGC 3 cut(s) 235, 721, 739
Hin1I GRCGYC 2 cut(s) 214, 719
Hin1II CATG 1 cut(s) 1166
Hin6I GCGC 3 cut(s) 233, 719, 737
HinP1I GCGC 3 cut(s) 233, 719, 737
HincII GTYRAC 4 cut(s) 79, 177, 202, 261
HindII GTYRAC 4 cut(s) 79, 177, 202, 261
HpaI GTTAAC 1 cut(s) 261
HpaII CCGG 7 cut(s) 54, 230, 362, 581, 782, 798, 1037
HphI GGTGA 2 cut(s) 302, 614
Hpy166II GTNNAC 6 cut(s) 79, 177, 202, 261, 874, 974
Hpy188I TCNGA 9 cut(s) 13, 20, 219, 286, 570, 663, 951, 1017, 1201
Hpy188III TCNNGA 7 cut(s) 116, 575, 596, 1051, 1083, 1139, 1163
Hpy8I GTNNAC 6 cut(s) 79, 177, 202, 261, 874, 974
Hpy99I CGWCG 6 cut(s) 50, 206, 219, 430, 520, 706
HpyAV CCTTC 1 cut(s) 593
HpyCH4III ACNGT 4 cut(s) 188, 449, 624, 848
HpyCH4IV ACGT 3 cut(s) 214, 515, 701
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 239, 326, 335, 1115, 1124
HpyF3I CTNAG 6 cut(s) 321, 999, 1014, 1021, 1028, 1200
HpySE526I ACGT 3 cut(s) 214, 515, 701
Hsp92I GRCGYC 2 cut(s) 214, 719
Hsp92II CATG 1 cut(s) 1166
HspAI GCGC 3 cut(s) 233, 719, 737
KasI GGCGCC 1 cut(s) 718
KpnI GGTACC 1 cut(s) 788
KroI GCCGGC 1 cut(s) 229
KroNI GCCGGC 1 cut(s) 231
Ksp22I TGATCA 1 cut(s) 1159
KspAI GTTAAC 1 cut(s) 261
Kzo9I GATC 8 cut(s) 4, 104, 404, 577, 629, 658, 955, 1159
LmnI GCTCC 6 cut(s) 62, 424, 856, 890, 908, 1132
Lsp1109I GCAGC 6 cut(s) 254, 325, 493, 923, 1018, 1159
LweI GCATC 3 cut(s) 92, 765, 1144
MaeI CTAG 3 cut(s) 74, 246, 615
MaeII ACGT 3 cut(s) 214, 515, 701
MaeIII GTNAC 2 cut(s) 188, 390
MalI GATC 8 cut(s) 6, 106, 406, 579, 631, 660, 957, 1161
MbiI CCGCTC 1 cut(s) 893
MboI GATC 8 cut(s) 4, 104, 404, 577, 629, 658, 955, 1159
MboII GAAGA 3 cut(s) 131, 219, 302
MflI RGATCY 3 cut(s) 4, 104, 577
MhlI GDGCHC 2 cut(s) 454, 853
MlsI TGGCCA 1 cut(s) 865
MluCI AATT 1 cut(s) 607
MluNI TGGCCA 1 cut(s) 865
Mly113I GGCGCC 1 cut(s) 719
MlyI GAGTC 6 cut(s) 116, 403, 457, 910, 1006, 1034
MmeI TCCRAC 2 cut(s) 36, 197
Mox20I TGGCCA 1 cut(s) 865
MroNI GCCGGC 1 cut(s) 229
MroXI GAANNNNTTC 2 cut(s) 306, 591
MscI TGGCCA 1 cut(s) 865
MseI TTAA 2 cut(s) 260, 380
MslI CAYNNNNRTG 2 cut(s) 474, 1167
Msp20I TGGCCA 1 cut(s) 865
MspI CCGG 7 cut(s) 54, 230, 362, 581, 782, 798, 1037
Mva1269I GAATGC 1 cut(s) 1111
MvnI CGCG 1 cut(s) 1103
MwoI GCNNNNNNNGC 6 cut(s) 47, 239, 326, 335, 1115, 1124
NaeI GCCGGC 1 cut(s) 231
NarI GGCGCC 1 cut(s) 719
NdeII GATC 8 cut(s) 4, 104, 404, 577, 629, 658, 955, 1159
NgoMIV GCCGGC 1 cut(s) 229
NlaIII CATG 1 cut(s) 1166
NlaIV GGNNCC 4 cut(s) 438, 708, 720, 786
NmeAIII GCCGAG 2 cut(s) 768, 1052
NmuCI GTSAC 1 cut(s) 188
PagI TCATGA 1 cut(s) 1162
PcsI WCGNNNNNNNCGW 4 cut(s) 155, 173, 220, 719
PctI GAATGC 1 cut(s) 1111
PdiI GCCGGC 1 cut(s) 231
PdmI GAANNNNTTC 2 cut(s) 306, 591
PfeI GAWTC 4 cut(s) 220, 565, 571, 1045
PleI GAGTC 6 cut(s) 116, 403, 457, 910, 1006, 1034
PluTI GGCGCC 1 cut(s) 722
PpsI GAGTC 6 cut(s) 116, 403, 457, 910, 1006, 1034
PpuMI RGGWCCY 1 cut(s) 707
Psp5II RGGWCCY 1 cut(s) 707
PspFI CCCAGC 1 cut(s) 758
PspN4I GGNNCC 4 cut(s) 438, 708, 720, 786
PspPI GGNCC 1 cut(s) 707
PspPPI RGGWCCY 1 cut(s) 707
PsuI RGATCY 3 cut(s) 4, 104, 577
RsaI GTAC 3 cut(s) 349, 786, 962
RsaNI GTAC 3 cut(s) 348, 785, 961
RseI CAYNNNNRTG 2 cut(s) 474, 1167
SalI GTCGAC 2 cut(s) 175, 200
SaqAI TTAA 2 cut(s) 260, 380
Sau3AI GATC 8 cut(s) 4, 104, 404, 577, 629, 658, 955, 1159
Sau96I GGNCC 1 cut(s) 707
SchI GAGTC 6 cut(s) 116, 403, 457, 910, 1006, 1034
SduI GDGCHC 2 cut(s) 454, 853
SfaNI GCATC 3 cut(s) 92, 765, 1144
SfcI CTRYAG 1 cut(s) 342
SfoI GGCGCC 1 cut(s) 720
SinI GGWCC 1 cut(s) 707
SmiMI CAYNNNNRTG 2 cut(s) 474, 1167
Sse9I AATT 1 cut(s) 607
SspDI GGCGCC 1 cut(s) 718
SspMI CTAG 3 cut(s) 74, 246, 615
TaaI ACNGT 4 cut(s) 188, 449, 624, 848
TaiI ACGT 3 cut(s) 217, 518, 704
TaqI TCGA 5 cut(s) 176, 201, 407, 428, 1043
TasI AATT 1 cut(s) 607
TatI WGTACW 1 cut(s) 960
TauI GCSGC 9 cut(s) 44, 442, 495, 523, 719, 742, 839, 1006, 1064
TfiI GAWTC 4 cut(s) 220, 565, 571, 1045
Tru1I TTAA 2 cut(s) 260, 380
Tru9I TTAA 2 cut(s) 260, 380
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 6 cut(s) 242, 338, 506, 911, 1006, 1147
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 495, 524
TspGWI ACGGA 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 1 cut(s) 607
XmiI GTMKAC 2 cut(s) 176, 201
XmnI GAANNNNTTC 2 cut(s) 306, 591
XspI CTAG 3 cut(s) 74, 246, 615
ZraI GACGTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.