transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G58100 AT1G58100 |
| malus_domestica | MD08G1240000.v1.1 MD15G1431700.v1.1 |
| prunus_persica | Prupe.1G576500_v2.0.a1 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 683, 1480 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1462 |
| AatII | GACGTC | 1 cut(s) | 1421 |
| Acc36I | ACCTGC | 2 cut(s) | 683, 1480 |
| AccB1I | GGYRCC | 2 cut(s) | 893, 1327 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 184 |
| AccBSI | CCGCTC | 2 cut(s) | 410, 857 |
| AccI | GTMKAC | 1 cut(s) | 429 |
| AccII | CGCG | 1 cut(s) | 1037 |
| AclWI | GGATC | 6 cut(s) | 450, 606, 630, 850, 1047, 1743 |
| AcoI | YGGCCR | 2 cut(s) | 669, 801 |
| AcsI | RAATTY | 5 cut(s) | 13, 513, 1544, 1645, 1702 |
| AcuI | CTGAAG | 2 cut(s) | 1105, 1254 |
| AcyI | GRCGYC | 3 cut(s) | 432, 894, 1418 |
| AfaI | GTAC | 2 cut(s) | 550, 1489 |
| AfeI | AGCGCT | 2 cut(s) | 1056, 1118 |
| AgsI | TTSAA | 5 cut(s) | 278, 820, 1138, 1544, 1696 |
| AhlI | ACTAGT | 1 cut(s) | 68 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1715, 1747 |
| AleI | CACNNNNGTG | 1 cut(s) | 1450 |
| AluBI | AGCT | 3 cut(s) | 97, 281, 344 |
| AluI | AGCT | 3 cut(s) | 97, 281, 344 |
| Alw26I | GTCTC | 4 cut(s) | 725, 1026, 1068, 1083 |
| AlwI | GGATC | 6 cut(s) | 450, 606, 630, 850, 1047, 1743 |
| Aor51HI | AGCGCT | 2 cut(s) | 1056, 1118 |
| AoxI | GGCC | 7 cut(s) | 248, 283, 643, 669, 801, 1283, 1791 |
| ApaI | GGGCCC | 1 cut(s) | 252 |
| ApoI | RAATTY | 5 cut(s) | 13, 513, 1544, 1645, 1702 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1056 |
| AspLEI | GCGC | 5 cut(s) | 680, 896, 1057, 1119, 1501 |
| AspS9I | GGNCC | 8 cut(s) | 187, 248, 249, 792, 1265, 1397, 1430, 1792 |
| AsuC2I | CCSGG | 4 cut(s) | 800, 891, 1414, 1423 |
| AsuHPI | GGTGA | 6 cut(s) | 83, 159, 531, 905, 989, 1706 |
| AsuII | TTCGAA | 1 cut(s) | 1292 |
| AvaII | GGWCC | 5 cut(s) | 187, 792, 1265, 1397, 1430 |
| BaeGI | GKGCMC | 1 cut(s) | 252 |
| BanI | GGYRCC | 2 cut(s) | 893, 1327 |
| BanII | GRGCYC | 3 cut(s) | 252, 266, 1574 |
| BbsI | GAAGAC | 2 cut(s) | 357, 682 |
| BbvCI | CCTCAGC | 1 cut(s) | 1280 |
| BccI | CCATC | 6 cut(s) | 191, 275, 803, 918, 1008, 1618 |
| BceAI | ACGGC | 2 cut(s) | 742, 1174 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1282, 1316 |
| BcnI | CCSGG | 4 cut(s) | 800, 891, 1414, 1423 |
| BcoDI | GTCTC | 4 cut(s) | 725, 1026, 1068, 1083 |
| BcuI | ACTAGT | 1 cut(s) | 68 |
| BfaI | CTAG | 2 cut(s) | 69, 1683 |
| BfoI | RGCGCY | 4 cut(s) | 897, 1058, 1120, 1502 |
| BfuAI | ACCTGC | 2 cut(s) | 683, 1480 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1319 |
| BglII | AGATCT | 2 cut(s) | 206, 1129 |
| BmcAI | AGTACT | 1 cut(s) | 550 |
| Bme1390I | CCNGG | 4 cut(s) | 800, 891, 1414, 1423 |
| Bme18I | GGWCC | 5 cut(s) | 187, 792, 1265, 1397, 1430 |
| BmgT120I | GGNCC | 8 cut(s) | 187, 248, 249, 792, 1265, 1397, 1430, 1792 |
| BmrFI | CCNGG | 4 cut(s) | 800, 891, 1414, 1423 |
| BmrI | ACTGGG | 1 cut(s) | 172 |
| BmsI | GCATC | 5 cut(s) | 1000, 1024, 1359, 1627, 1720 |
| BmuI | ACTGGG | 1 cut(s) | 172 |
| BpiI | GAAGAC | 2 cut(s) | 357, 682 |
| BpmI | CTGGAG | 3 cut(s) | 237, 734, 796 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1280 |
| Bpu14I | TTCGAA | 1 cut(s) | 1292 |
| BpuMI | CCSGG | 4 cut(s) | 800, 891, 1414, 1423 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1146, 1740 |
| BsaHI | GRCGYC | 3 cut(s) | 432, 894, 1418 |
| BsaJI | CCNNGG | 8 cut(s) | 618, 646, 897, 1035, 1422, 1437, 1517, 1564 |
| BsaWI | WCCGGW | 1 cut(s) | 782 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 397, 427 |
| Bse118I | RCCGGY | 2 cut(s) | 667, 1556 |
| Bse1I | ACTGG | 5 cut(s) | 178, 546, 694, 813, 1376 |
| Bse3DI | GCAATG | 2 cut(s) | 1490, 1502 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1146, 1740 |
| BseDI | CCNNGG | 8 cut(s) | 618, 646, 897, 1035, 1422, 1437, 1517, 1564 |
| BseGI | GGATG | 7 cut(s) | 115, 121, 127, 795, 1147, 1374, 1726 |
| BseJI | GATNNNNATC | 2 cut(s) | 1146, 1740 |
| BseMI | GCAATG | 2 cut(s) | 1490, 1502 |
| BseMII | CTCAG | 2 cut(s) | 1271, 1698 |
| BseNI | ACTGG | 5 cut(s) | 178, 546, 694, 813, 1376 |
| BseSI | GKGCMC | 1 cut(s) | 252 |
| BsgI | GTGCAG | 2 cut(s) | 315, 1428 |
| Bsh1236I | CGCG | 1 cut(s) | 1037 |
| BshFI | GGCC | 7 cut(s) | 250, 285, 645, 671, 803, 1285, 1793 |
| BshNI | GGYRCC | 2 cut(s) | 893, 1327 |
| BsiSI | CCGG | 7 cut(s) | 668, 783, 800, 891, 1413, 1422, 1557 |
| BslFI | GGGAC | 3 cut(s) | 173, 805, 1429 |
| BsmAI | GTCTC | 4 cut(s) | 725, 1026, 1068, 1083 |
| BsmFI | GGGAC | 3 cut(s) | 173, 805, 1429 |
| BsmI | GAATGC | 2 cut(s) | 669, 1675 |
| BsnI | GGCC | 7 cut(s) | 250, 285, 645, 671, 803, 1285, 1793 |
| Bsp119I | TTCGAA | 1 cut(s) | 1292 |
| Bsp120I | GGGCCC | 1 cut(s) | 248 |
| Bsp1286I | GDGCHC | 3 cut(s) | 252, 266, 1574 |
| Bsp143I | GATC | 9 cut(s) | 206, 455, 611, 622, 768, 842, 1039, 1129, 1735 |
| BspANI | GGCC | 7 cut(s) | 250, 285, 645, 671, 803, 1285, 1793 |
| BspCNI | CTCAG | 2 cut(s) | 1272, 1699 |
| BspFNI | CGCG | 1 cut(s) | 1037 |
| BspMI | ACCTGC | 2 cut(s) | 683, 1480 |
| BspPI | GGATC | 6 cut(s) | 450, 606, 630, 850, 1047, 1743 |
| BspT104I | TTCGAA | 1 cut(s) | 1292 |
| BspT107I | GGYRCC | 2 cut(s) | 893, 1327 |
| BsrBI | CCGCTC | 2 cut(s) | 410, 857 |
| BsrDI | GCAATG | 2 cut(s) | 1490, 1502 |
| BsrFI | RCCGGY | 2 cut(s) | 667, 1556 |
| BsrI | ACTGG | 5 cut(s) | 178, 546, 694, 813, 1376 |
| BssAI | RCCGGY | 2 cut(s) | 667, 1556 |
| BssECI | CCNNGG | 8 cut(s) | 618, 646, 897, 1035, 1422, 1437, 1517, 1564 |
| BssMI | GATC | 9 cut(s) | 206, 455, 611, 622, 768, 842, 1039, 1129, 1735 |
| BssNI | GRCGYC | 3 cut(s) | 432, 894, 1418 |
| BssT1I | CCWWGG | 2 cut(s) | 618, 897 |
| Bst4CI | ACNGT | 3 cut(s) | 162, 325, 1103 |
| Bst6I | CTCTTC | 1 cut(s) | 361 |
| BstACI | GRCGYC | 3 cut(s) | 432, 894, 1418 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1513 |
| BstBI | TTCGAA | 1 cut(s) | 1292 |
| BstC8I | GCNNGC | 8 cut(s) | 283, 669, 756, 765, 1354, 1497, 1554, 1558 |
| BstDEI | CTNAG | 2 cut(s) | 1280, 1707 |
| BstDSI | CCRYGG | 1 cut(s) | 1035 |
| BstF5I | GGATG | 7 cut(s) | 115, 121, 127, 795, 1147, 1374, 1726 |
| BstFNI | CGCG | 1 cut(s) | 1037 |
| BstH2I | RGCGCY | 4 cut(s) | 897, 1058, 1120, 1502 |
| BstHHI | GCGC | 5 cut(s) | 680, 896, 1057, 1119, 1501 |
| BstKTI | GATC | 9 cut(s) | 209, 458, 614, 625, 771, 845, 1042, 1132, 1738 |
| BstMAI | GTCTC | 4 cut(s) | 725, 1026, 1068, 1083 |
| BstMBI | GATC | 9 cut(s) | 206, 455, 611, 622, 768, 842, 1039, 1129, 1735 |
| BstNSI | RCATGY | 1 cut(s) | 1657 |
| BstSCI | CCNGG | 4 cut(s) | 798, 889, 1412, 1421 |
| BstSLI | GKGCMC | 1 cut(s) | 252 |
| BstUI | CGCG | 1 cut(s) | 1037 |
| BstV2I | GAAGAC | 2 cut(s) | 357, 682 |
| BstX2I | RGATCY | 3 cut(s) | 206, 455, 1129 |
| BstYI | RGATCY | 3 cut(s) | 206, 455, 1129 |
| BsuRI | GGCC | 7 cut(s) | 250, 285, 645, 671, 803, 1285, 1793 |
| BtgI | CCRYGG | 1 cut(s) | 1035 |
| BtgZI | GCGATG | 1 cut(s) | 757 |
| BtsCI | GGATG | 7 cut(s) | 115, 121, 127, 795, 1147, 1374, 1726 |
| BtsI | GCAGTG | 2 cut(s) | 1308, 1329 |
| BtsIMutI | CAGTG | 2 cut(s) | 1308, 1329 |
| BveI | ACCTGC | 2 cut(s) | 683, 1480 |
| Cac8I | GCNNGC | 8 cut(s) | 283, 669, 756, 765, 1354, 1497, 1554, 1558 |
| CfoI | GCGC | 5 cut(s) | 680, 896, 1057, 1119, 1501 |
| Cfr10I | RCCGGY | 2 cut(s) | 667, 1556 |
| Cfr13I | GGNCC | 8 cut(s) | 187, 248, 249, 792, 1265, 1397, 1430, 1792 |
| Cfr42I | CCGCGG | 1 cut(s) | 1038 |
| CseI | GACGC | 1 cut(s) | 440 |
| Csp6I | GTAC | 2 cut(s) | 549, 1488 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 405, 440 |
| CviAII | CATG | 5 cut(s) | 259, 1315, 1513, 1591, 1654 |
| CviQI | GTAC | 2 cut(s) | 549, 1488 |
| DdeI | CTNAG | 2 cut(s) | 1280, 1707 |
| DinI | GGCGCC | 1 cut(s) | 895 |
| DpnI | GATC | 9 cut(s) | 208, 457, 613, 624, 770, 844, 1041, 1131, 1737 |
| DpnII | GATC | 9 cut(s) | 206, 455, 611, 622, 768, 842, 1039, 1129, 1735 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1462 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1462 |
| EaeI | YGGCCR | 2 cut(s) | 669, 801 |
| Eam1104I | CTCTTC | 1 cut(s) | 361 |
| EarI | CTCTTC | 1 cut(s) | 361 |
| EciI | GGCGGA | 4 cut(s) | 487, 849, 862, 1086 |
| Eco130I | CCWWGG | 2 cut(s) | 618, 897 |
| Eco24I | GRGCYC | 3 cut(s) | 252, 266, 1574 |
| Eco47I | GGWCC | 5 cut(s) | 187, 792, 1265, 1397, 1430 |
| Eco47III | AGCGCT | 2 cut(s) | 1056, 1118 |
| Eco57I | CTGAAG | 2 cut(s) | 1105, 1254 |
| EcoO109I | RGGNCCY | 4 cut(s) | 248, 249, 1265, 1792 |
| EcoRI | GAATTC | 2 cut(s) | 1544, 1702 |
| EcoT14I | CCWWGG | 2 cut(s) | 618, 897 |
| EcoT38I | GRGCYC | 3 cut(s) | 252, 266, 1574 |
| EgeI | GGCGCC | 1 cut(s) | 895 |
| EheI | GGCGCC | 1 cut(s) | 895 |
| ErhI | CCWWGG | 2 cut(s) | 618, 897 |
| FaeI | CATG | 5 cut(s) | 262, 1318, 1516, 1594, 1657 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 270, 302 |
| FaqI | GGGAC | 3 cut(s) | 173, 805, 1429 |
| FatI | CATG | 5 cut(s) | 258, 1314, 1512, 1590, 1653 |
| FauI | CCCGC | 2 cut(s) | 495, 1339 |
| FblI | GTMKAC | 1 cut(s) | 429 |
| FokI | GGATG | 7 cut(s) | 102, 108, 114, 782, 1154, 1381, 1713 |
| FriOI | GRGCYC | 3 cut(s) | 252, 266, 1574 |
| FspBI | CTAG | 2 cut(s) | 69, 1683 |
| GlaI | GCGC | 5 cut(s) | 679, 895, 1056, 1118, 1500 |
| GsuI | CTGGAG | 3 cut(s) | 237, 734, 796 |
| HaeII | RGCGCY | 4 cut(s) | 897, 1058, 1120, 1502 |
| HaeIII | GGCC | 7 cut(s) | 250, 285, 645, 671, 803, 1285, 1793 |
| HapII | CCGG | 7 cut(s) | 668, 783, 800, 891, 1413, 1422, 1557 |
| HgaI | GACGC | 1 cut(s) | 440 |
| HhaI | GCGC | 5 cut(s) | 680, 896, 1057, 1119, 1501 |
| Hin1I | GRCGYC | 3 cut(s) | 432, 894, 1418 |
| Hin1II | CATG | 5 cut(s) | 262, 1318, 1516, 1594, 1657 |
| Hin6I | GCGC | 5 cut(s) | 678, 894, 1055, 1117, 1499 |
| HinP1I | GCGC | 5 cut(s) | 678, 894, 1055, 1117, 1499 |
| HincII | GTYRAC | 2 cut(s) | 430, 699 |
| HindII | GTYRAC | 2 cut(s) | 430, 699 |
| HinfI | GANTC | 7 cut(s) | 461, 494, 687, 1091, 1632, 1640, 1723 |
| HpaII | CCGG | 7 cut(s) | 668, 783, 800, 891, 1413, 1422, 1557 |
| HphI | GGTGA | 6 cut(s) | 83, 159, 531, 905, 989, 1706 |
| Hpy166II | GTNNAC | 4 cut(s) | 430, 699, 1397, 1455 |
| Hpy188I | TCNGA | 7 cut(s) | 460, 724, 1124, 1252, 1438, 1668, 1708 |
| Hpy188III | TCNNGA | 4 cut(s) | 216, 1366, 1541, 1683 |
| Hpy8I | GTNNAC | 4 cut(s) | 430, 699, 1397, 1455 |
| Hpy99I | CGWCG | 3 cut(s) | 434, 728, 929 |
| HpyCH4III | ACNGT | 3 cut(s) | 162, 325, 1103 |
| HpyCH4IV | ACGT | 2 cut(s) | 1418, 1457 |
| HpyCH4V | TGCA | 7 cut(s) | 332, 1049, 1231, 1445, 1495, 1507, 1600 |
| HpyF3I | CTNAG | 2 cut(s) | 1280, 1707 |
| HpySE526I | ACGT | 2 cut(s) | 1418, 1457 |
| Hsp92I | GRCGYC | 3 cut(s) | 432, 894, 1418 |
| Hsp92II | CATG | 5 cut(s) | 262, 1318, 1516, 1594, 1657 |
| HspAI | GCGC | 5 cut(s) | 678, 894, 1055, 1117, 1499 |
| KasI | GGCGCC | 1 cut(s) | 893 |
| KroI | GCCGGC | 2 cut(s) | 667, 1556 |
| KroNI | GCCGGC | 2 cut(s) | 669, 1558 |
| KspI | CCGCGG | 1 cut(s) | 1038 |
| Kzo9I | GATC | 9 cut(s) | 206, 455, 611, 622, 768, 842, 1039, 1129, 1735 |
| LmnI | GCTCC | 8 cut(s) | 102, 218, 269, 349, 415, 750, 862, 1569 |
| LweI | GCATC | 5 cut(s) | 1000, 1024, 1359, 1627, 1720 |
| MaeI | CTAG | 2 cut(s) | 69, 1683 |
| MaeII | ACGT | 2 cut(s) | 1418, 1457 |
| MaeIII | GTNAC | 2 cut(s) | 71, 1378 |
| MalI | GATC | 9 cut(s) | 208, 457, 613, 624, 770, 844, 1041, 1131, 1737 |
| MbiI | CCGCTC | 2 cut(s) | 410, 857 |
| MboI | GATC | 9 cut(s) | 206, 455, 611, 622, 768, 842, 1039, 1129, 1735 |
| MboII | GAAGA | 9 cut(s) | 104, 165, 201, 204, 348, 357, 360, 682, 1139 |
| MfeI | CAATTG | 3 cut(s) | 527, 1226, 1580 |
| MflI | RGATCY | 3 cut(s) | 206, 455, 1129 |
| MhlI | GDGCHC | 3 cut(s) | 252, 266, 1574 |
| Mly113I | GGCGCC | 1 cut(s) | 894 |
| MlyI | GAGTC | 6 cut(s) | 455, 488, 696, 1085, 1634, 1641 |
| MmeI | TCCRAC | 3 cut(s) | 483, 747, 1230 |
| MroNI | GCCGGC | 2 cut(s) | 667, 1556 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1056 |
| MseI | TTAA | 2 cut(s) | 1206, 1524 |
| MslI | CAYNNNNRTG | 4 cut(s) | 662, 1313, 1450, 1595 |
| MspA1I | CMGCKG | 7 cut(s) | 490, 840, 1037, 1080, 1173, 1344, 1385 |
| MspI | CCGG | 7 cut(s) | 668, 783, 800, 891, 1413, 1422, 1557 |
| MspR9I | CCNGG | 4 cut(s) | 800, 891, 1414, 1423 |
| MunI | CAATTG | 3 cut(s) | 527, 1226, 1580 |
| Mva1269I | GAATGC | 2 cut(s) | 669, 1675 |
| MvnI | CGCG | 1 cut(s) | 1037 |
| NaeI | GCCGGC | 2 cut(s) | 669, 1558 |
| NarI | GGCGCC | 1 cut(s) | 894 |
| NciI | CCSGG | 4 cut(s) | 800, 891, 1414, 1423 |
| NdeII | GATC | 9 cut(s) | 206, 455, 611, 622, 768, 842, 1039, 1129, 1735 |
| NgoMIV | GCCGGC | 2 cut(s) | 667, 1556 |
| NlaIII | CATG | 5 cut(s) | 262, 1318, 1516, 1594, 1657 |
| NmeAIII | GCCGAG | 4 cut(s) | 671, 784, 1542, 1589 |
| NspI | RCATGY | 1 cut(s) | 1657 |
| NspV | TTCGAA | 1 cut(s) | 1292 |
| OliI | CACNNNNGTG | 1 cut(s) | 1450 |
| PaqCI | CACCTGC | 2 cut(s) | 683, 1480 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 658 |
| PctI | GAATGC | 2 cut(s) | 669, 1675 |
| PdiI | GCCGGC | 2 cut(s) | 669, 1558 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1056 |
| PfeI | GAWTC | 1 cut(s) | 1723 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 184 |
| PleI | GAGTC | 6 cut(s) | 455, 488, 695, 1085, 1634, 1640 |
| PluTI | GGCGCC | 1 cut(s) | 897 |
| PpsI | GAGTC | 6 cut(s) | 455, 488, 695, 1085, 1634, 1640 |
| PpuMI | RGGWCCY | 1 cut(s) | 1265 |
| Psp5II | RGGWCCY | 1 cut(s) | 1265 |
| PspOMI | GGGCCC | 1 cut(s) | 248 |
| PspPI | GGNCC | 8 cut(s) | 187, 248, 249, 792, 1265, 1397, 1430, 1792 |
| PspPPI | RGGWCCY | 1 cut(s) | 1265 |
| PsuI | RGATCY | 3 cut(s) | 206, 455, 1129 |
| RsaI | GTAC | 2 cut(s) | 550, 1489 |
| RsaNI | GTAC | 2 cut(s) | 549, 1488 |
| RseI | CAYNNNNRTG | 4 cut(s) | 662, 1313, 1450, 1595 |
| SacII | CCGCGG | 1 cut(s) | 1038 |
| SalI | GTCGAC | 1 cut(s) | 428 |
| SaqAI | TTAA | 2 cut(s) | 1206, 1524 |
| Sau3AI | GATC | 9 cut(s) | 206, 455, 611, 622, 768, 842, 1039, 1129, 1735 |
| Sau96I | GGNCC | 8 cut(s) | 187, 248, 249, 792, 1265, 1397, 1430, 1792 |
| ScaI | AGTACT | 1 cut(s) | 550 |
| SchI | GAGTC | 6 cut(s) | 455, 488, 696, 1085, 1634, 1641 |
| ScrFI | CCNGG | 4 cut(s) | 800, 891, 1414, 1423 |
| SduI | GDGCHC | 3 cut(s) | 252, 266, 1574 |
| SfaNI | GCATC | 5 cut(s) | 1000, 1024, 1359, 1627, 1720 |
| SfoI | GGCGCC | 1 cut(s) | 895 |
| Sfr303I | CCGCGG | 1 cut(s) | 1038 |
| SfuI | TTCGAA | 1 cut(s) | 1292 |
| SgrBI | CCGCGG | 1 cut(s) | 1038 |
| SinI | GGWCC | 5 cut(s) | 187, 792, 1265, 1397, 1430 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 662, 1313, 1450, 1595 |
| SpeI | ACTAGT | 1 cut(s) | 68 |
| SspDI | GGCGCC | 1 cut(s) | 893 |
| SspMI | CTAG | 2 cut(s) | 69, 1683 |
| StyD4I | CCNGG | 4 cut(s) | 798, 889, 1412, 1421 |
| StyI | CCWWGG | 2 cut(s) | 618, 897 |
| TaaI | ACNGT | 3 cut(s) | 162, 325, 1103 |
| TaiI | ACGT | 2 cut(s) | 1421, 1460 |
| TaqI | TCGA | 5 cut(s) | 429, 639, 738, 1292, 1643 |
| TatI | WGTACW | 2 cut(s) | 548, 1487 |
| TauI | GCSGC | 8 cut(s) | 584, 657, 683, 779, 1068, 1071, 1083, 1288 |
| TfiI | GAWTC | 1 cut(s) | 1723 |
| Tru1I | TTAA | 2 cut(s) | 1206, 1524 |
| Tru9I | TTAA | 2 cut(s) | 1206, 1524 |
| TscAI | CASTG | 2 cut(s) | 1315, 1329 |
| TspDTI | ATGAA | 7 cut(s) | 104, 247, 303, 506, 950, 1501, 1715 |
| TspGWI | ACGGA | 1 cut(s) | 1452 |
| TspRI | CASTG | 2 cut(s) | 1315, 1329 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 184 |
| VpaK11BI | GGWCC | 5 cut(s) | 187, 792, 1265, 1397, 1430 |
| XapI | RAATTY | 5 cut(s) | 13, 513, 1544, 1645, 1702 |
| XbaI | TCTAGA | 1 cut(s) | 1682 |
| XceI | RCATGY | 1 cut(s) | 1657 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1321 |
| XmiI | GTMKAC | 1 cut(s) | 429 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1056 |
| XspI | CTAG | 2 cut(s) | 69, 1683 |
| ZraI | GACGTC | 1 cut(s) | 1419 |
| ZrmI | AGTACT | 1 cut(s) | 550 |