AT1G58470

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013372
Physical Location & Seq
Forward (+)
21726963 .. 21728802
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58470.1

Sequence Viewer

Length: 1083 bp
ATGGATTATGATCGGTACAAGTTATTTGTTGGTGGTATTGCGAAAGAGACAAGTGAAGAAGCTCTGAAGCAGTATTTTAGCAGATATGGAGCTGTGTTGGAAGCTGTTGTAGCTAAAGAGAAAGTCACTGGAAAACCTAGAGGTTTTGGGTTTGTTCGCTTTGCTAATGATTGTGATGTTGTTAAAGCTCTTAGAGACACTCACTTCATTCTCGGTAAACCCGTTGATGTGAGAAAGGCGATTAGGAAACATGAACTATACCAACAGCCGTTTAGCATGCAGTTTTTGGAGAGAAAAGTGCAACAGATGAATGGTGGTTTGCGTGAGATGTCGAGTAATGGTGTGACCAGTAGGACTAAGAAGATATTTGTTGGGGGTTTGTCGTCTAACACGACTGAGGAAGAGTTTAAGAGTTACTTTGAGAGGTTTGGTAGGACTACTGATGTAGTTGTGATGCATGACGGTGTGACTAACAGGCCAAGGGGTTTTGGGTTTGTTACTTATGATTCGGAGGACTCTGTTGAGGTTGTTATGCAGAGTAATTTCCATGAGTTGAGTGATAAACGCGTGGAAGTGAAACGGGCAATACCTAAAGAAGGAATCCAGAGCAATAACGGTAATGCTGTTAATATTCCTCCTTCCTACAGCAGCTTTCAAGCAACACCTTATGTCCCTGAGCAAAACGGATATGGGATGGTTTTACAGTTTCCTCCTCCTGTCTTTGGTTATCATCACAATGTCCAAGCCGTTCAATATCCTTATGGTTACCAATTCACAGCACAAGTGGCTAACGTTTCATGGAACAATCCGATTATGCAACCCACCGGTTTTTACTGTGCTCCTCCTCATCCTACTCCTCCTCCCACCAACAATCTTGGTTATATCCAATACATGAACGGGTTTGATCTTTCGGGTACGAACATTTCCGGGTACAATCCTCTAGCATGGCCTGTAACGGGGGATGCAGCTGGTGCGCTAATACATCAGTTTGTAGATTTGAAGCTTGATGTCCACAGTCAAGCCCATCAGAGAATGAATGGAGGTAACATGGGAATACCATTGCAGAATGGTACATATATATGA

Protein Analysis

360

Amino Acids

40.34

Weight (kDa)

8.32

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 67 8.6e-15 RNA recognition motif
RRM_1 PF00076 122 - 189 1.3e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58470 AT1G58470
fragaria_vesca FvH4_2g32660
malus_domestica MD15G1064900.v1.1
prunus_persica Prupe.1G418900_v2.0.a1 Prupe.1G418900_v2.0.a1 Prupe.1G418900_v2.0.a1
pyrus_communis pycom15g06160
rosa_chinensis RchiOBHm_Chr6g0310071
rosa_laevigata RLG00000010514
rosa_multiflora Rmu_sc0000294.1_g000020
rosa_roxburghii Rroxscaffold_7G00158910
rosa_rugosa Rorug06G0377200
rosa_samantha Rh6AG490900 Rh6BG500400 Rh6CG505300 Rh6DG491300
rosa_wichuraiana Rw6G042720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 567
AclI AACGTT 1 cut(s) 792
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 4 cut(s) 17, 916, 932, 1072
AfiI CCNNNNNNNGG 3 cut(s) 596, 722, 956
AflIII ACRYGT 1 cut(s) 565
AgeI ACCGGT 1 cut(s) 824
AgsI TTSAA 3 cut(s) 656, 752, 1000
AluBI AGCT 8 cut(s) 62, 92, 104, 113, 188, 651, 968, 1003
AluI AGCT 8 cut(s) 62, 92, 104, 113, 188, 651, 968, 1003
Alw21I GWGCWC 1 cut(s) 841
Alw26I GTCTC 2 cut(s) 41, 189
AoxI GGCC 2 cut(s) 476, 947
ApeKI GCWGC 2 cut(s) 648, 965
AsiGI ACCGGT 1 cut(s) 824
AspLEI GCGC 1 cut(s) 976
AsuC2I CCSGG 1 cut(s) 928
Bbv12I GWGCWC 1 cut(s) 841
BbvI GCAGC 2 cut(s) 660, 977
BccI CCATC 2 cut(s) 688, 1032
BceAI ACGGC 2 cut(s) 253, 731
BcnI CCSGG 1 cut(s) 928
BcoDI GTCTC 2 cut(s) 41, 189
BfaI CTAG 2 cut(s) 138, 941
BfmI CTRYAG 1 cut(s) 643
BisI GCNGC 2 cut(s) 649, 966
BlsI GCNGC 2 cut(s) 650, 967
Bme1390I CCNGG 1 cut(s) 928
BmrFI CCNGG 1 cut(s) 928
BmsI GCATC 2 cut(s) 444, 952
Bpu10I CCTNAGC 1 cut(s) 675
BpuMI CCSGG 1 cut(s) 928
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 479
BsaWI WCCGGW 1 cut(s) 824
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 3 cut(s) 596, 722, 956
Bse118I RCCGGY 1 cut(s) 824
Bse1I ACTGG 2 cut(s) 133, 348
Bse3DI GCAATG 1 cut(s) 1058
Bse8I GATNNNNATC 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 3 cut(s) 699, 847, 967
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 3 cut(s) 596, 722, 956
BseMI GCAATG 1 cut(s) 1058
BseMII CTCAG 2 cut(s) 387, 666
BseNI ACTGG 2 cut(s) 133, 348
BseRI GAGGAG 5 cut(s) 702, 831, 834, 846, 849
BseXI GCAGC 2 cut(s) 660, 977
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 2 cut(s) 478, 949
BshTI ACCGGT 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 841
BsiSI CCGG 2 cut(s) 825, 927
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 3 cut(s) 596, 722, 956
BsmAI GTCTC 2 cut(s) 41, 189
BsmFI GGGAC 1 cut(s) 656
BsnI GGCC 2 cut(s) 478, 949
Bsp1286I GDGCHC 1 cut(s) 841
Bsp143I GATC 2 cut(s) 10, 904
BspANI GGCC 2 cut(s) 478, 949
BspCNI CTCAG 2 cut(s) 388, 667
BspFNI CGCG 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 1058
BsrFI RCCGGY 1 cut(s) 824
BsrI ACTGG 2 cut(s) 133, 348
BssAI RCCGGY 1 cut(s) 824
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 2 cut(s) 10, 904
BssT1I CCWWGG 1 cut(s) 479
Bst4CI ACNGT 5 cut(s) 464, 617, 705, 836, 1016
Bst6I CTCTTC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 971
BstC8I GCNNGC 1 cut(s) 278
BstDEI CTNAG 4 cut(s) 191, 357, 396, 675
BstEII GGTNACC 1 cut(s) 764
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 3 cut(s) 699, 847, 967
BstFNI CGCG 1 cut(s) 567
BstHHI GCGC 1 cut(s) 976
BstKTI GATC 2 cut(s) 13, 907
BstMAI GTCTC 2 cut(s) 41, 189
BstMBI GATC 2 cut(s) 10, 904
BstMWI GCNNNNNNNGC 3 cut(s) 110, 785, 971
BstNSI RCATGY 1 cut(s) 280
BstPI GGTNACC 1 cut(s) 764
BstSCI CCNGG 1 cut(s) 926
BstSFI CTRYAG 1 cut(s) 643
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 660, 977
BsuRI GGCC 2 cut(s) 478, 949
BtsCI GGATG 3 cut(s) 699, 847, 967
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 278
CfoI GCGC 1 cut(s) 976
Cfr10I RCCGGY 1 cut(s) 824
Csp6I GTAC 4 cut(s) 16, 915, 931, 1071
CspAI ACCGGT 1 cut(s) 824
CviAII CATG 8 cut(s) 251, 277, 458, 548, 798, 892, 945, 1048
CviQI GTAC 4 cut(s) 16, 915, 931, 1071
DdeI CTNAG 4 cut(s) 191, 357, 396, 675
DpnI GATC 2 cut(s) 12, 906
DpnII GATC 2 cut(s) 10, 904
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 764
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO65I GGTNACC 1 cut(s) 764
EcoT14I CCWWGG 1 cut(s) 479
EcoT22I ATGCAT 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 8 cut(s) 254, 280, 461, 551, 801, 895, 948, 1051
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 656
FatI CATG 8 cut(s) 250, 276, 457, 547, 797, 891, 944, 1047
Fnu4HI GCNGC 2 cut(s) 649, 966
FokI GGATG 3 cut(s) 706, 834, 974
Fsp4HI GCNGC 2 cut(s) 649, 966
FspBI CTAG 2 cut(s) 138, 941
GlaI GCGC 1 cut(s) 975
GluI GCNGC 2 cut(s) 649, 966
HaeIII GGCC 2 cut(s) 478, 949
HapII CCGG 2 cut(s) 825, 927
HhaI GCGC 1 cut(s) 976
Hin1II CATG 8 cut(s) 254, 280, 461, 551, 801, 895, 948, 1051
Hin6I GCGC 1 cut(s) 974
HinP1I GCGC 1 cut(s) 974
HindIII AAGCTT 1 cut(s) 1001
HinfI GANTC 3 cut(s) 506, 515, 600
HpaII CCGG 2 cut(s) 825, 927
Hpy166II GTNNAC 2 cut(s) 218, 1012
Hpy188I TCNGA 4 cut(s) 66, 511, 810, 1029
Hpy188III TCNNGA 1 cut(s) 604
Hpy8I GTNNAC 2 cut(s) 218, 1012
HpyAV CCTTC 2 cut(s) 590, 648
HpyCH4III ACNGT 5 cut(s) 464, 617, 705, 836, 1016
HpyCH4IV ACGT 1 cut(s) 792
HpyCH4V TGCA 7 cut(s) 280, 301, 457, 535, 817, 965, 1063
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 785, 971
HpyF3I CTNAG 4 cut(s) 191, 357, 396, 675
HpySE526I ACGT 1 cut(s) 792
Hsp92II CATG 8 cut(s) 254, 280, 461, 551, 801, 895, 948, 1051
HspAI GCGC 1 cut(s) 974
Kzo9I GATC 2 cut(s) 10, 904
LmnI GCTCC 2 cut(s) 89, 844
Lsp1109I GCAGC 2 cut(s) 660, 977
LweI GCATC 2 cut(s) 444, 952
MaeI CTAG 2 cut(s) 138, 941
MaeII ACGT 1 cut(s) 792
MaeIII GTNAC 8 cut(s) 124, 343, 413, 466, 496, 764, 952, 1043
MalI GATC 2 cut(s) 12, 906
MboI GATC 2 cut(s) 10, 904
MboII GAAGA 3 cut(s) 68, 373, 413
MhlI GDGCHC 1 cut(s) 841
MluCI AATT 2 cut(s) 541, 770
MluI ACGCGT 1 cut(s) 565
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 1 cut(s) 78
Mph1103I ATGCAT 1 cut(s) 459
MseI TTAA 3 cut(s) 183, 408, 627
MslI CAYNNNNRTG 3 cut(s) 462, 735, 1078
MspA1I CMGCKG 1 cut(s) 968
MspI CCGG 2 cut(s) 825, 927
MspR9I CCNGG 1 cut(s) 928
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 3 cut(s) 110, 785, 971
NciI CCSGG 1 cut(s) 928
NdeII GATC 2 cut(s) 10, 904
NlaIII CATG 8 cut(s) 254, 280, 461, 551, 801, 895, 948, 1051
NmuCI GTSAC 3 cut(s) 124, 343, 466
NsiI ATGCAT 1 cut(s) 459
NspI RCATGY 1 cut(s) 280
PaeI GCATGC 1 cut(s) 280
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 389
PfeI GAWTC 2 cut(s) 506, 600
PinAI ACCGGT 1 cut(s) 824
PkrI GCNGC 2 cut(s) 650, 967
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
Psp1406I AACGTT 1 cut(s) 792
PspEI GGTNACC 1 cut(s) 764
PvuII CAGCTG 1 cut(s) 968
RsaI GTAC 4 cut(s) 17, 916, 932, 1072
RsaNI GTAC 4 cut(s) 16, 915, 931, 1071
RseI CAYNNNNRTG 3 cut(s) 462, 735, 1078
SaqAI TTAA 3 cut(s) 183, 408, 627
SatI GCNGC 2 cut(s) 649, 966
Sau3AI GATC 2 cut(s) 10, 904
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 928
SduI GDGCHC 1 cut(s) 841
SfaNI GCATC 2 cut(s) 444, 952
SfcI CTRYAG 1 cut(s) 643
SmiMI CAYNNNNRTG 3 cut(s) 462, 735, 1078
SphI GCATGC 1 cut(s) 280
Sse9I AATT 2 cut(s) 541, 770
SspI AATATT 1 cut(s) 631
SspMI CTAG 2 cut(s) 138, 941
StyD4I CCNGG 1 cut(s) 926
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 5 cut(s) 464, 617, 705, 836, 1016
TaiI ACGT 1 cut(s) 795
TaqI TCGA 1 cut(s) 332
TasI AATT 2 cut(s) 541, 770
TfiI GAWTC 2 cut(s) 506, 600
Tru1I TTAA 3 cut(s) 183, 408, 627
Tru9I TTAA 3 cut(s) 183, 408, 627
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 3 cut(s) 124, 343, 466
TseI GCWGC 2 cut(s) 648, 965
Tsp45I GTSAC 3 cut(s) 124, 343, 466
TspDTI ATGAA 6 cut(s) 196, 267, 323, 786, 908, 1049
TspGWI ACGGA 1 cut(s) 699
TspRI CASTG 1 cut(s) 133
XagI CCTNNNNNAGG 1 cut(s) 594
XceI RCATGY 1 cut(s) 280
XspI CTAG 2 cut(s) 138, 941
Zsp2I ATGCAT 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.