RLG00000010514

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013372
Physical Location & Seq
Reverse (-)
2284782 .. 2285932
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010514

Sequence Viewer

Length: 963 bp
ATGGACTCTGATCAAGCGAAGCTCTTCGTCGGTGGTTTGTCTAAGGACACCACCGAAGCCACATTGAAAGAGCACTTCGGCCAATACGGCGTCGTTTTGGGCTCGACGGTTACCATGGACCGCGTCACAAGCAGCTCTCGAGGGTTTGGCTTCGTCTGGTTCTCTGATCCGTCTTCCGCTGATAAAGCCCTAGAAGACTCGCATGTCATTCTCGGAAGAAAGGTAGATGTGAAGAAAGCAAAACCCAGAAGAGCCTGGGCATACCCCAAAAACCAAGAACCACTGCCACCGCAACAACTGCAAAGTAGTAGTTTTGAGAGTGGCAGTAATTTTAGAACAAGGAAGATCTTTGTAGGGGGATTGTCGCCGAGTGTAACTGAGTTGGAGTTTAAGAATTACTTTGAGAAGTTTGGTAGGGTAACTGATGTAGTGGTGATGATGGACAGCGCAACTCACCGCCCTCGGGGCTTTGGTTTTATCACTTTTGATTCAGAGGAGTCGGTTGAGAATGTAATGCAGAAGAACTTTCATGAGTTGAATGGTAAGTTTGTGGAGGTCAAGAGGGCTGTGCCGAGGGAGGAGAGTTACAGCAACAATGAGAGGGGTTATCAGCCGGGCAGTAATCGTCCTCGATATACCGGTAGTCCTACTACATATGGAGTTCTTCCTACTCCTGCACCTTATAATGGTTTCGGAGGGTTTACTGGTGGAACAGGTGTTTATGGCGGTTGGTACCCATCGGGTGGATACGCTGGGGTTCCTTATGGCATTGCCCCAATTGTTCCTCAGGCGTGGGTGTTTCCATACGGCAACACTTTTTATCCTGCCTACATGAGTGGCGGGGGATGGGTAGCGGCTGCTGGTGGGCATAACTTGTATAATAGAGTGTCCGAGCCAGCTGTGAATCGGCGTGGTTTTGTCATTGAGCATGCACCAGCGGATGTGAAGTCATCTGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

321

Amino Acids

35.04

Weight (kDa)

8.83

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 74 3e-16 RNA recognition motif
RRM_7 PF16367 114 - 187 3.1e-07 RNA recognition motif
RRM_1 PF00076 116 - 184 1.7e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58470 AT1G58470
fragaria_vesca FvH4_2g32660
malus_domestica MD15G1064900.v1.1
prunus_persica Prupe.1G418900_v2.0.a1 Prupe.1G418900_v2.0.a1 Prupe.1G418900_v2.0.a1
pyrus_communis pycom15g06160
rosa_chinensis RchiOBHm_Chr6g0310071
rosa_laevigata RLG00000010514
rosa_multiflora Rmu_sc0000294.1_g000020
rosa_roxburghii Rroxscaffold_7G00158910
rosa_rugosa Rorug06G0377200
rosa_samantha Rh6AG490900 Rh6BG500400 Rh6CG505300 Rh6DG491300
rosa_wichuraiana Rw6G042720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AasI GACNNNNNNGTC 1 cut(s) 203
Acc65I GGTACC 1 cut(s) 732
AccB1I GGYRCC 1 cut(s) 732
AccB7I CCANNNNNTGG 1 cut(s) 743
AccII CGCG 1 cut(s) 123
AciI CCGC 8 cut(s) 121, 177, 290, 457, 726, 840, 854, 938
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 734
AfiI CCNNNNNNNGG 3 cut(s) 463, 686, 743
AgeI ACCGGT 1 cut(s) 638
AgsI TTSAA 2 cut(s) 67, 538
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 3 cut(s) 22, 135, 899
AluI AGCT 3 cut(s) 22, 135, 899
Alw21I GWGCWC 1 cut(s) 75
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 2 cut(s) 138, 462
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 132, 857
AsiGI ACCGGT 1 cut(s) 638
Asp700I GAANNNNTTC 1 cut(s) 23
Asp718I GGTACC 1 cut(s) 732
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 2 cut(s) 445, 446
AvaI CYCGRG 2 cut(s) 138, 462
AvaII GGWCC 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 786
BanI GGYRCC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 2 cut(s) 165, 201
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 144, 844
BccI CCATC 3 cut(s) 433, 745, 840
BceAI ACGGC 2 cut(s) 103, 823
BciT130I CCWGG 1 cut(s) 256
BciVI GTATCC 1 cut(s) 740
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 615
BfaI CTAG 1 cut(s) 191
BfuI GTATCC 1 cut(s) 740
BglI GCCNNNNNGGC 2 cut(s) 87, 465
BglII AGATCT 1 cut(s) 345
BisI GCNGC 3 cut(s) 133, 855, 858
BlsI GCNGC 3 cut(s) 134, 856, 859
Bme1390I CCNGG 2 cut(s) 256, 615
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 2 cut(s) 138, 462
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 734, 759
BmrFI CCNGG 2 cut(s) 256, 615
BpiI GAAGAC 2 cut(s) 165, 201
BpuMI CCSGG 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 4 cut(s) 114, 255, 461, 572
BsaWI WCCGGW 1 cut(s) 638
Bsc4I CCNNNNNNNGG 3 cut(s) 463, 686, 743
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 1 cut(s) 709
Bse21I CCTNAGG 1 cut(s) 786
Bse3DI GCAATG 1 cut(s) 768
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 4 cut(s) 114, 255, 461, 572
BseGI GGATG 2 cut(s) 851, 946
BseLI CCNNNNNNNGG 3 cut(s) 463, 686, 743
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 2 cut(s) 369, 800
BseNI ACTGG 1 cut(s) 709
BseRI GAGGAG 2 cut(s) 509, 593
BseXI GCAGC 2 cut(s) 144, 844
BseYI CCCAGC 1 cut(s) 752
BsgI GTGCAG 1 cut(s) 660
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 732
BshTI ACCGGT 1 cut(s) 638
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 2 cut(s) 138, 462
BsiSI CCGG 2 cut(s) 614, 639
BslI CCNNNNNNNGG 3 cut(s) 463, 686, 743
BsnI GGCC 1 cut(s) 81
BsoBI CYCGRG 2 cut(s) 138, 462
Bsp1286I GDGCHC 2 cut(s) 75, 104
Bsp143I GATC 3 cut(s) 10, 166, 345
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 8 cut(s) 121, 177, 290, 457, 726, 840, 854, 938
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 370, 799
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 2 cut(s) 734, 759
BspPI GGATC 1 cut(s) 161
BspQI GCTCTTC 2 cut(s) 29, 244
BspT107I GGYRCC 1 cut(s) 732
BsrDI GCAATG 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 1 cut(s) 709
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 4 cut(s) 114, 255, 461, 572
BssMI GATC 3 cut(s) 10, 166, 345
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 29, 244
BstACI GRCGYC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 897, 930
BstDEI CTNAG 3 cut(s) 42, 378, 786
BstDSI CCRYGG 1 cut(s) 114
BstEII GGTNACC 1 cut(s) 109
BstF5I GGATG 2 cut(s) 851, 946
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 3 cut(s) 13, 169, 348
BstMBI GATC 3 cut(s) 10, 166, 345
BstMWI GCNNNNNNNGC 5 cut(s) 87, 129, 185, 298, 465
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 2 cut(s) 206, 932
BstPI GGTNACC 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 254, 613
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 144, 844
BstV2I GAAGAC 2 cut(s) 165, 201
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
Bsu36I CCTNAGG 1 cut(s) 786
BsuI GTATCC 1 cut(s) 740
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 2 cut(s) 851, 946
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 897, 930
CciI TCATGA 1 cut(s) 529
CfoI GCGC 1 cut(s) 449
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 2 cut(s) 79, 112
Csp6I GTAC 1 cut(s) 733
CspAI ACCGGT 1 cut(s) 638
CviAII CATG 5 cut(s) 115, 203, 530, 832, 929
CviQI GTAC 1 cut(s) 733
DdeI CTNAG 3 cut(s) 42, 378, 786
DpnI GATC 3 cut(s) 12, 168, 347
DpnII GATC 3 cut(s) 10, 166, 345
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 2 cut(s) 29, 244
EarI CTCTTC 2 cut(s) 29, 244
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 786
Eco88I CYCGRG 2 cut(s) 138, 462
Eco91I GGTNACC 1 cut(s) 109
EcoO65I GGTNACC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 5 cut(s) 118, 206, 533, 835, 932
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FatI CATG 5 cut(s) 114, 202, 529, 831, 928
FauI CCCGC 1 cut(s) 833
FauNDI CATATG 1 cut(s) 655
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 133, 855, 858
FokI GGATG 2 cut(s) 858, 953
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 133, 855, 858
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 448
GluI GCNGC 3 cut(s) 133, 855, 858
GsaI CCCAGC 1 cut(s) 756
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 614, 639
HgaI GACGC 2 cut(s) 79, 112
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 5 cut(s) 118, 206, 533, 835, 932
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HinfI GANTC 5 cut(s) 5, 197, 488, 497, 904
HpaII CCGG 2 cut(s) 614, 639
HphI GGTGA 2 cut(s) 445, 446
Hpy166II GTNNAC 1 cut(s) 702
Hpy188I TCNGA 6 cut(s) 10, 166, 215, 493, 695, 892
Hpy188III TCNNGA 3 cut(s) 138, 530, 559
Hpy8I GTNNAC 1 cut(s) 702
Hpy99I CGWCG 3 cut(s) 32, 95, 109
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 301, 517, 677, 932
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 129, 185, 298, 465
HpyF3I CTNAG 3 cut(s) 42, 378, 786
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 5 cut(s) 118, 206, 533, 835, 932
HspAI GCGC 1 cut(s) 447
KpnI GGTACC 1 cut(s) 736
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 3 cut(s) 10, 166, 345
LguI GCTCTTC 2 cut(s) 29, 244
Lsp1109I GCAGC 2 cut(s) 144, 844
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 5 cut(s) 109, 124, 373, 418, 584
MalI GATC 3 cut(s) 12, 168, 347
MboI GATC 3 cut(s) 10, 166, 345
MboII GAAGA 9 cut(s) 16, 165, 206, 228, 244, 261, 355, 532, 656
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 2 cut(s) 75, 104
MluCI AATT 3 cut(s) 328, 394, 777
MlyI GAGTC 2 cut(s) 191, 506
MmeI TCCRAC 1 cut(s) 363
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 390
MspA1I CMGCKG 3 cut(s) 179, 899, 938
MspI CCGG 2 cut(s) 614, 639
MspR9I CCNGG 2 cut(s) 256, 615
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 5 cut(s) 87, 129, 185, 298, 465
NciI CCSGG 1 cut(s) 615
NcoI CCATGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 655
NdeII GATC 3 cut(s) 10, 166, 345
NlaIII CATG 5 cut(s) 118, 206, 533, 835, 932
NlaIV GGNNCC 2 cut(s) 734, 759
NmeAIII GCCGAG 2 cut(s) 393, 597
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 2 cut(s) 206, 932
PaeI GCATGC 1 cut(s) 932
PaeR7I CTCGAG 1 cut(s) 138
PagI TCATGA 1 cut(s) 529
PciSI GCTCTTC 2 cut(s) 29, 244
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 488, 904
PflFI GACNNNGTC 1 cut(s) 122
PflMI CCANNNNNTGG 1 cut(s) 743
PinAI ACCGGT 1 cut(s) 638
PkrI GCNGC 3 cut(s) 134, 856, 859
PleI GAGTC 2 cut(s) 191, 505
PpsI GAGTC 2 cut(s) 191, 505
PsiI TTATAA 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 254
PspEI GGTNACC 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 734, 759
PspPI GGNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 345
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 1 cut(s) 734
RsaNI GTAC 1 cut(s) 733
SapI GCTCTTC 2 cut(s) 29, 244
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 3 cut(s) 133, 855, 858
Sau3AI GATC 3 cut(s) 10, 166, 345
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 2 cut(s) 191, 506
ScrFI CCNGG 2 cut(s) 256, 615
SduI GDGCHC 2 cut(s) 75, 104
SetI ASST 7 cut(s) 24, 137, 225, 558, 682, 718, 901
Sfr274I CTCGAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 932
Sse9I AATT 3 cut(s) 328, 394, 777
SsiI CCGC 8 cut(s) 121, 177, 290, 457, 726, 840, 854, 938
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 254, 613
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 3 cut(s) 104, 139, 631
TasI AATT 3 cut(s) 328, 394, 777
TauI GCSGC 1 cut(s) 857
TfiI GAWTC 2 cut(s) 488, 904
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 132, 857
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 518
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 288
Tth111I GACNNNGTC 1 cut(s) 122
Van91I CCANNNNNTGG 1 cut(s) 743
VpaK11BI GGWCC 1 cut(s) 118
XceI RCATGY 2 cut(s) 206, 932
XhoI CTCGAG 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.