FvH4_2g32660

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013372
Physical Location & Seq
Reverse (-)
24694614 .. 24696418
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32660.t1

Sequence Viewer

Length: 993 bp
ATGGACTCTGATCAAGCCAAGCTCTTCCTCGGTGGTATATCTCCGGAGACCACCGAAGCTACATTGCAAGATTACTTCGGCCAATACGGCGCCGTTTTGGGCTCGACAGTTGCCAAGGACCGCTCCACTGGCATTCCTCGAGGGTTTGGCTTCGTCTGGTTCTCTGATCCGTCTTCGGCTGATAAAGCCCTCCAAGACTCGCATGTCATTCTTGGAAGAAAGGTAGATGTGAAGAGAGCAAAACCCAGAAGAGCCTTTGCACACCCCAGAAACCAAGAACCGCTGCCACCGCAGCAATTGCAGAGTAGTAGTTTTGAGGCTAGCAACAATCAGTTTAGAACAAGGAAGATTTTTGTGGGGGGATTGTCGGCGAGTGTGACAGAATTGGAGTTTAAGAATTACTTTGAGAAGTTTGGTAGGGTGACTGATGTAGTGGTGATGATGGACAGCACAACTCACCGCCCTCGCGGGTTTGGTTTTATCACTTTTGAGTCTGAGGATGCTGTGGATAATGTGATGCAGAAAAACTTCCACCAGGTGAGTGGTAAGTTTGTGGAGGTCAAGAGGGCTGTGCCGAGGGAGGAGAGTTACAATCCGGACAGGGGTTATCAGCCTGGCAGTAATCGTTCTCCTTATATTGGCAGTCCTACTACATATGGAGTTCTTCCTACTCCTACACCTTATGCTGGTATTGGAGGGTTTACTGGTGGAACAGGTGTCTATGGAGGTTGGTACCCGGCTGGTGGATACACAGGTGTTCCTTATGGCATTGCCACCCCAATTGTTCCTCAGGCGTTGATGTATCCGTATGGCAACACTTTTTATCCTGCATACATGAGTGGCGGGGGATGGGTGGCGGCTGGAGGTGGGCATAACTTGTATAACAGAGTGTTTGAGCCAGCTATGAATCAGCGTGGTTTTGTGAGCCAGCATGCACCAGCTGATGTGAAGTCGTCTGGGGTTGAAGGGGAGAAACTTGATGGTGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

331

Amino Acids

35.82

Weight (kDa)

8.54

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 74 2.3e-14 RNA recognition motif
RRM_7 PF16367 115 - 187 1.3e-06 RNA recognition motif
RRM_1 PF00076 117 - 183 3.5e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58470 AT1G58470
fragaria_vesca FvH4_2g32660
malus_domestica MD15G1064900.v1.1
prunus_persica Prupe.1G418900_v2.0.a1 Prupe.1G418900_v2.0.a1 Prupe.1G418900_v2.0.a1
pyrus_communis pycom15g06160
rosa_chinensis RchiOBHm_Chr6g0310071
rosa_laevigata RLG00000010514
rosa_multiflora Rmu_sc0000294.1_g000020
rosa_roxburghii Rroxscaffold_7G00158910
rosa_rugosa Rorug06G0377200
rosa_samantha Rh6AG490900 Rh6BG500400 Rh6CG505300 Rh6DG491300
rosa_wichuraiana Rw6G042720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AbsI CCTCGAGG 1 cut(s) 138
Acc65I GGTACC 1 cut(s) 732
AccB1I GGYRCC 2 cut(s) 89, 732
AccBSI CCGCTC 1 cut(s) 123
AccII CGCG 1 cut(s) 468
AccIII TCCGGA 2 cut(s) 43, 595
AciI CCGC 7 cut(s) 121, 281, 290, 460, 468, 843, 857
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 90
AdeI CACNNNGTG 1 cut(s) 538
AfaI GTAC 1 cut(s) 734
AfiI CCNNNNNNNGG 4 cut(s) 602, 638, 686, 743
AgsI TTSAA 1 cut(s) 965
AjnI CCWGG 2 cut(s) 534, 613
AluBI AGCT 4 cut(s) 22, 59, 902, 941
AluI AGCT 4 cut(s) 22, 59, 902, 941
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 138
Aor13HI TCCGGA 2 cut(s) 43, 595
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 283, 292, 986
Asp700I GAANNNNTTC 1 cut(s) 527
Asp718I GGTACC 1 cut(s) 732
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 737
AsuHPI GGTGA 4 cut(s) 433, 448, 449, 550
AsuNHI GCTAGC 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 789
BaeI ACNNNNGTAYC 2 cut(s) 739, 772
BanI GGYRCC 2 cut(s) 89, 732
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 270, 304, 973
BccI CCATC 3 cut(s) 436, 843, 974
BceAI ACGGC 2 cut(s) 77, 103
BciT130I CCWGG 2 cut(s) 536, 615
BciVI GTATCC 2 cut(s) 740, 813
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 737
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 93
BfuI GTATCC 2 cut(s) 740, 813
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 4 cut(s) 284, 293, 858, 987
BlsI GCNGC 4 cut(s) 285, 294, 859, 988
Bme1390I CCNGG 3 cut(s) 536, 615, 737
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 91, 734
BmrFI CCNGG 3 cut(s) 536, 615, 737
BmsI GCATC 2 cut(s) 490, 507
BmtI GCTAGC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 882
BpuMI CCSGG 1 cut(s) 737
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 28, 114, 575
BsaWI WCCGGW 2 cut(s) 43, 595
Bsc4I CCNNNNNNNGG 4 cut(s) 602, 638, 686, 743
Bse1I ACTGG 2 cut(s) 133, 709
Bse21I CCTNAGG 1 cut(s) 789
Bse3DI GCAATG 2 cut(s) 62, 768
BseAI TCCGGA 2 cut(s) 43, 595
BseBI CCWGG 2 cut(s) 536, 615
BseDI CCNNGG 3 cut(s) 28, 114, 575
BseGI GGATG 2 cut(s) 505, 854
BseLI CCNNNNNNNGG 4 cut(s) 602, 638, 686, 743
BseMI GCAATG 2 cut(s) 62, 768
BseMII CTCAG 2 cut(s) 486, 803
BseNI ACTGG 2 cut(s) 133, 709
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 3 cut(s) 270, 304, 973
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 2 cut(s) 89, 732
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 3 cut(s) 44, 596, 737
BslI CCNNNNNNNGG 4 cut(s) 602, 638, 686, 743
BsmAI GTCTC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 104
Bsp13I TCCGGA 2 cut(s) 43, 595
Bsp143I GATC 2 cut(s) 10, 166
BspACI CCGC 7 cut(s) 121, 281, 290, 460, 468, 843, 857
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 487, 802
BspEI TCCGGA 2 cut(s) 43, 595
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 91, 734
BspOI GCTAGC 1 cut(s) 324
BspPI GGATC 1 cut(s) 161
BspQI GCTCTTC 2 cut(s) 29, 244
BspT107I GGYRCC 2 cut(s) 89, 732
BspTNI GGTCTC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 2 cut(s) 62, 768
BsrI ACTGG 2 cut(s) 133, 709
BssECI CCNNGG 3 cut(s) 28, 114, 575
BssMI GATC 2 cut(s) 10, 166
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 536, 615
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 3 cut(s) 29, 227, 244
BstACI GRCGYC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 298
BstC8I GCNNGC 4 cut(s) 322, 900, 929, 933
BstDEI CTNAG 2 cut(s) 495, 789
BstF5I GGATG 2 cut(s) 505, 854
BstFNI CGCG 1 cut(s) 468
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 13, 169
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 10, 166
BstMWI GCNNNNNNNGC 6 cut(s) 87, 129, 185, 289, 292, 298
BstNI CCWGG 2 cut(s) 536, 615
BstNSI RCATGY 2 cut(s) 206, 935
BstSCI CCNGG 3 cut(s) 534, 613, 735
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 3 cut(s) 270, 304, 973
BstV2I GAAGAC 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 542
Bsu36I CCTNAGG 1 cut(s) 789
BsuI GTATCC 2 cut(s) 740, 813
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 2 cut(s) 505, 854
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 4 cut(s) 322, 900, 929, 933
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 118
CsiI ACCWGGT 1 cut(s) 534
Csp6I GTAC 1 cut(s) 733
CspCI CAANNNNNGTGG 2 cut(s) 763, 798
CviAII CATG 4 cut(s) 203, 835, 932, 990
CviQI GTAC 1 cut(s) 733
DdeI CTNAG 2 cut(s) 495, 789
DinI GGCGCC 1 cut(s) 91
DpnI GATC 2 cut(s) 12, 168
DpnII GATC 2 cut(s) 10, 166
DraIII CACNNNGTG 1 cut(s) 538
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 3 cut(s) 29, 227, 244
EarI CTCTTC 3 cut(s) 29, 227, 244
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 789
Eco88I CYCGRG 1 cut(s) 138
EcoRII CCWGG 2 cut(s) 534, 613
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 104
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 4 cut(s) 206, 838, 935, 993
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 4 cut(s) 202, 834, 931, 989
FauI CCCGC 2 cut(s) 461, 836
FauNDI CATATG 1 cut(s) 655
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 4 cut(s) 284, 293, 858, 987
FokI GGATG 2 cut(s) 512, 861
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 4 cut(s) 284, 293, 858, 987
FspBI CTAG 1 cut(s) 321
GlaI GCGC 1 cut(s) 91
GluI GCNGC 4 cut(s) 284, 293, 858, 987
GsuI CTGGAG 1 cut(s) 882
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 81
HapII CCGG 3 cut(s) 44, 596, 737
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 4 cut(s) 206, 838, 935, 993
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 4 cut(s) 5, 197, 491, 907
HpaII CCGG 3 cut(s) 44, 596, 737
HphI GGTGA 4 cut(s) 433, 448, 449, 550
Hpy166II GTNNAC 1 cut(s) 702
Hpy188I TCNGA 3 cut(s) 10, 166, 496
Hpy188III TCNNGA 3 cut(s) 44, 562, 596
Hpy8I GTNNAC 1 cut(s) 702
HpyAV CCTTC 1 cut(s) 959
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 7 cut(s) 67, 260, 301, 520, 830, 935, 989
HpyF10VI GCNNNNNNNGC 6 cut(s) 87, 129, 185, 289, 292, 298
HpyF3I CTNAG 2 cut(s) 495, 789
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 4 cut(s) 206, 838, 935, 993
HspAI GCGC 1 cut(s) 90
KasI GGCGCC 1 cut(s) 89
Kpn2I TCCGGA 2 cut(s) 43, 595
KpnI GGTACC 1 cut(s) 736
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 2 cut(s) 10, 166
LguI GCTCTTC 2 cut(s) 29, 244
LmnI GCTCC 1 cut(s) 128
Lsp1109I GCAGC 3 cut(s) 270, 304, 973
LweI GCATC 2 cut(s) 490, 507
MabI ACCWGGT 1 cut(s) 534
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 3 cut(s) 376, 421, 587
MalI GATC 2 cut(s) 12, 168
MbiI CCGCTC 1 cut(s) 123
MboI GATC 2 cut(s) 10, 166
MboII GAAGA 7 cut(s) 16, 165, 228, 244, 261, 358, 656
MfeI CAATTG 2 cut(s) 296, 780
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 4 cut(s) 296, 383, 397, 780
Mly113I GGCGCC 1 cut(s) 90
MlyI GAGTC 2 cut(s) 191, 500
MroI TCCGGA 2 cut(s) 43, 595
MroXI GAANNNNTTC 1 cut(s) 527
MseI TTAA 1 cut(s) 393
MspA1I CMGCKG 2 cut(s) 283, 941
MspI CCGG 3 cut(s) 44, 596, 737
MspR9I CCNGG 3 cut(s) 536, 615, 737
MunI CAATTG 2 cut(s) 296, 780
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 2 cut(s) 536, 615
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 6 cut(s) 87, 129, 185, 289, 292, 298
NarI GGCGCC 1 cut(s) 90
NciI CCSGG 1 cut(s) 737
NdeI CATATG 1 cut(s) 655
NdeII GATC 2 cut(s) 10, 166
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 4 cut(s) 206, 838, 935, 993
NlaIV GGNNCC 2 cut(s) 91, 734
NmeAIII GCCGAG 1 cut(s) 600
NmuCI GTSAC 2 cut(s) 376, 421
NspI RCATGY 2 cut(s) 206, 935
PaeI GCATGC 1 cut(s) 935
PaeR7I CTCGAG 1 cut(s) 138
PciSI GCTCTTC 2 cut(s) 29, 244
PctI GAATGC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 907
PkrI GCNGC 4 cut(s) 285, 294, 859, 988
PleI GAGTC 2 cut(s) 191, 499
PluTI GGCGCC 1 cut(s) 93
PpsI GAGTC 2 cut(s) 191, 499
Psp6I CCWGG 2 cut(s) 534, 613
PspGI CCWGG 2 cut(s) 534, 613
PspN4I GGNNCC 2 cut(s) 91, 734
PspPI GGNCC 1 cut(s) 118
PspXI VCTCGAGB 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 1 cut(s) 734
RsaNI GTAC 1 cut(s) 733
SapI GCTCTTC 2 cut(s) 29, 244
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 4 cut(s) 284, 293, 858, 987
Sau3AI GATC 2 cut(s) 10, 166
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 2 cut(s) 191, 500
ScrFI CCNGG 3 cut(s) 536, 615, 737
SduI GDGCHC 1 cut(s) 104
SexAI ACCWGGT 1 cut(s) 534
SfaNI GCATC 2 cut(s) 490, 507
SfoI GGCGCC 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 935
Sse9I AATT 4 cut(s) 296, 383, 397, 780
SsiI CCGC 7 cut(s) 121, 281, 290, 460, 468, 843, 857
SspDI GGCGCC 1 cut(s) 89
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 3 cut(s) 534, 613, 735
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 104, 139
TasI AATT 4 cut(s) 296, 383, 397, 780
TauI GCSGC 1 cut(s) 860
TfiI GAWTC 1 cut(s) 907
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 2 cut(s) 376, 421
TseI GCWGC 3 cut(s) 283, 292, 986
Tsp45I GTSAC 2 cut(s) 376, 421
TspDTI ATGAA 1 cut(s) 920
TspGWI ACGGA 2 cut(s) 159, 795
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 118
XceI RCATGY 2 cut(s) 206, 935
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XhoI CTCGAG 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.