Prupe.1G418900_v2.0.a1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013372
Physical Location & Seq
Reverse (-)
36293541 .. 36295610
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G418900.2

Sequence Viewer

Length: 1017 bp
ATGGACTCTGATCAAGCAAAGCTGTTCGTGGGGGGCATCTCTCGGGAGACAAGTGAAGAGACACTGAAATACCATTTCCGGAGCTACGGCACCGTTGTGGGCTCGGTCATCGCCAAGGACCGCGGCACCAACAACCCTAGAGGCTTCGGCTTCGTCTGGTTCTCTGACTCGTCTTCAGCTGATAAAGCCCTAGAAGATCCCCATGTGATTCTGGGGAGAAGGGTAGATGTAAAGAAAGCAATTCCCAGAAACGAACATCAAAGTACTTGGTTGAGTAGGAGTAGTAGTAGAAGCTTTGAGAATAGCAACAATCAGTTTAGAACAAGGAAGATATTTGTTGGGGGTTTATCAGCGAATCTGACTGAGGAGGGGTTTAAGGATTATTTTGAGAAGTTTGGGAGTGTAACGGATGTAGTGGTGATGTATGACAACACAACCCGCCGACCTAGGGGGTTTGGTTTTGTTACCTTCGCTTCGGAGGATGCTGTTGAGAATGTTATGCAGCAAAGCTTTCATGAGTTGAATGGTAGGTTTGTGGAGGTCAAGAAGGCTGTGCCAAAGGAGGAGAATAACAGTAACGACAGTGGTTATGCACCGGTCAATTACCCTCCTTATACTTATAGTCCTACTCCTACATATGGGATTCTTCCTAGTCCTACACCTTATAATGGGTTTGGGCCATTTATGTATGGAACCAGTGTTTATGGCGGTTGGTACCCTACCGGAGGATCTGGTGGGATTCCTTATGGCATTGCTCCAATTGCTCCTCAGGCCTGGATGTTTCCTTATGGCAACTCTTTATATCCGAGCTACATGCGTGGTGGGGGCTTGGTGGCAGGTGGGTATAGTGGGATTCTGGGGCACGGTGCTGTTGGTGGCATATCGAATCAGGTTGTTTTTGGCAATGGGCAGGCACCAGCTTCTGTGAAGTCATCTCGGGTTGAAGCGGAGAAACTAGACGTGGATTCTGGAAGCAACAGTGCTGGTTTGAAGAAAAGAAATTCAAAGAGGTCTTGA

Protein Analysis

339

Amino Acids

36.79

Weight (kDa)

9.11

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58470 AT1G58470
fragaria_vesca FvH4_2g32660
malus_domestica MD15G1064900.v1.1
prunus_persica Prupe.1G418900_v2.0.a1 Prupe.1G418900_v2.0.a1 Prupe.1G418900_v2.0.a1
pyrus_communis pycom15g06160
rosa_chinensis RchiOBHm_Chr6g0310071
rosa_laevigata RLG00000010514
rosa_multiflora Rmu_sc0000294.1_g000020
rosa_roxburghii Rroxscaffold_7G00158910
rosa_rugosa Rorug06G0377200
rosa_samantha Rh6AG490900 Rh6BG500400 Rh6CG505300 Rh6DG491300
rosa_wichuraiana Rw6G042720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AarI CACCTGC 1 cut(s) 827
Acc36I ACCTGC 1 cut(s) 827
Acc65I GGTACC 1 cut(s) 714
AccB1I GGYRCC 4 cut(s) 89, 125, 714, 913
AccII CGCG 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 5 cut(s) 121, 123, 439, 708, 947
AclWI GGATC 2 cut(s) 191, 736
AcsI RAATTY 1 cut(s) 1000
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 2 cut(s) 265, 716
AfiI CCNNNNNNNGG 4 cut(s) 448, 638, 668, 725
AgeI ACCGGT 1 cut(s) 595
AgsI TTSAA 4 cut(s) 523, 944, 991, 1005
AjiI CACGTC 1 cut(s) 961
AjnI CCWGG 1 cut(s) 773
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 7 cut(s) 22, 84, 179, 294, 510, 810, 920
AluI AGCT 7 cut(s) 22, 84, 179, 294, 510, 810, 920
Alw26I GTCTC 2 cut(s) 41, 53
AlwI GGATC 2 cut(s) 191, 736
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 2 cut(s) 42, 936
Aor13HI TCCGGA 1 cut(s) 78
AoxI GGCC 2 cut(s) 677, 771
ApeKI GCWGC 1 cut(s) 502
ApoI RAATTY 1 cut(s) 1000
AsiGI ACCGGT 1 cut(s) 595
Asp718I GGTACC 1 cut(s) 714
AspA2I CCTAGG 1 cut(s) 446
AspS9I GGNCC 2 cut(s) 118, 677
AsuHPI GGTGA 1 cut(s) 430
AvaI CYCGRG 2 cut(s) 42, 936
AvaII GGWCC 1 cut(s) 118
AvrII CCTAGG 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 768
BaeGI GKGCMC 1 cut(s) 864
BanI GGYRCC 4 cut(s) 89, 125, 714, 913
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 514
BceAI ACGGC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 796, 830
BciT130I CCWGG 1 cut(s) 775
BclI TGATCA 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 41, 53
BfaI CTAG 5 cut(s) 138, 191, 447, 651, 956
BfuAI ACCTGC 1 cut(s) 827
BisI GCNGC 2 cut(s) 124, 503
BlnI CCTAGG 1 cut(s) 446
BlsI GCNGC 2 cut(s) 125, 504
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 775
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 2 cut(s) 42, 936
BmgBI CACGTC 1 cut(s) 961
BmgT120I GGNCC 2 cut(s) 118, 677
BmiI GGNNCC 5 cut(s) 91, 127, 694, 716, 915
BmrFI CCNGG 1 cut(s) 775
BmsI GCATC 2 cut(s) 45, 472
BpiI GAAGAC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 114, 121, 446
BsaWI WCCGGW 3 cut(s) 78, 595, 722
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 4 cut(s) 448, 638, 668, 725
Bse118I RCCGGY 1 cut(s) 595
Bse1I ACTGG 1 cut(s) 696
Bse21I CCTNAGG 1 cut(s) 768
Bse3DI GCAATG 2 cut(s) 750, 910
BseAI TCCGGA 1 cut(s) 78
BseBI CCWGG 1 cut(s) 775
BseDI CCNNGG 3 cut(s) 114, 121, 446
BseGI GGATG 3 cut(s) 415, 487, 783
BseLI CCNNNNNNNGG 4 cut(s) 448, 638, 668, 725
BseMI GCAATG 2 cut(s) 750, 910
BseMII CTCAG 2 cut(s) 354, 782
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 3 cut(s) 380, 578, 756
BseSI GKGCMC 1 cut(s) 864
BseXI GCAGC 1 cut(s) 514
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 679, 773
BshNI GGYRCC 4 cut(s) 89, 125, 714, 913
BshTI ACCGGT 1 cut(s) 595
BsiHKCI CYCGRG 2 cut(s) 42, 936
BsiSI CCGG 3 cut(s) 79, 596, 723
BslI CCNNNNNNNGG 4 cut(s) 448, 638, 668, 725
BsmAI GTCTC 2 cut(s) 41, 53
BsnI GGCC 2 cut(s) 679, 773
BsoBI CYCGRG 2 cut(s) 42, 936
Bsp1286I GDGCHC 2 cut(s) 104, 864
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 3 cut(s) 10, 196, 728
BspACI CCGC 5 cut(s) 121, 123, 439, 708, 947
BspANI GGCC 2 cut(s) 679, 773
BspCNI CTCAG 2 cut(s) 355, 781
BspEI TCCGGA 1 cut(s) 78
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 5 cut(s) 91, 127, 694, 716, 915
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 2 cut(s) 191, 736
BspT107I GGYRCC 4 cut(s) 89, 125, 714, 913
BsrDI GCAATG 2 cut(s) 750, 910
BsrFI RCCGGY 1 cut(s) 595
BsrI ACTGG 1 cut(s) 696
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 3 cut(s) 114, 121, 446
BssMI GATC 3 cut(s) 10, 196, 728
BssT1I CCWWGG 2 cut(s) 114, 446
Bst2UI CCWGG 1 cut(s) 775
Bst4CI ACNGT 5 cut(s) 94, 575, 584, 866, 980
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 912
BstDEI CTNAG 2 cut(s) 363, 768
BstDSI CCRYGG 1 cut(s) 121
BstENI CCTNNNNNAGG 1 cut(s) 723
BstF5I GGATG 3 cut(s) 415, 487, 783
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 3 cut(s) 13, 199, 731
BstMAI GTCTC 2 cut(s) 41, 53
BstMBI GATC 3 cut(s) 10, 196, 728
BstMWI GCNNNNNNNGC 3 cut(s) 185, 761, 770
BstNI CCWGG 1 cut(s) 775
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 1 cut(s) 773
BstSLI GKGCMC 1 cut(s) 864
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 196, 728
BstYI RGATCY 2 cut(s) 196, 728
Bsu36I CCTNAGG 1 cut(s) 768
BsuRI GGCC 2 cut(s) 679, 773
BtgI CCRYGG 1 cut(s) 121
BtgZI GCGATG 1 cut(s) 94
BtrI CACGTC 1 cut(s) 961
BtsCI GGATG 3 cut(s) 415, 487, 783
BtsIMutI CAGTG 4 cut(s) 62, 589, 703, 985
BveI ACCTGC 1 cut(s) 827
Cac8I GCNNGC 1 cut(s) 912
CaiI CAGNNNCTG 1 cut(s) 923
CciI TCATGA 1 cut(s) 514
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 118, 677
Cfr42I CCGCGG 1 cut(s) 124
Csp6I GTAC 2 cut(s) 264, 715
CspAI ACCGGT 1 cut(s) 595
CviAII CATG 3 cut(s) 203, 515, 814
CviQI GTAC 2 cut(s) 264, 715
DdeI CTNAG 2 cut(s) 363, 768
DpnI GATC 3 cut(s) 12, 198, 730
DpnII GATC 3 cut(s) 10, 196, 728
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 114, 446
Eco147I AGGCCT 1 cut(s) 773
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 768
Eco88I CYCGRG 2 cut(s) 42, 936
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoRII CCWGG 1 cut(s) 773
EcoT14I CCWWGG 2 cut(s) 114, 446
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 2 cut(s) 114, 446
FaeI CATG 3 cut(s) 206, 518, 817
FatI CATG 3 cut(s) 202, 514, 813
FauI CCCGC 1 cut(s) 446
FauNDI CATATG 1 cut(s) 637
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 124, 503
FokI GGATG 3 cut(s) 422, 494, 790
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 2 cut(s) 124, 503
FspBI CTAG 5 cut(s) 138, 191, 447, 651, 956
GluI GCNGC 2 cut(s) 124, 503
HaeIII GGCC 2 cut(s) 679, 773
HapII CCGG 3 cut(s) 79, 596, 723
Hin1II CATG 3 cut(s) 206, 518, 817
HindIII AAGCTT 2 cut(s) 292, 508
HinfI GANTC 9 cut(s) 5, 167, 208, 355, 643, 739, 853, 886, 965
HpaII CCGG 3 cut(s) 79, 596, 723
HphI GGTGA 1 cut(s) 430
Hpy188I TCNGA 5 cut(s) 10, 166, 360, 478, 807
Hpy188III TCNNGA 6 cut(s) 44, 79, 515, 544, 969, 1014
HpyAV CCTTC 3 cut(s) 213, 478, 541
HpyCH4III ACNGT 5 cut(s) 94, 575, 584, 866, 980
HpyCH4IV ACGT 1 cut(s) 960
HpyCH4V TGCA 2 cut(s) 502, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 761, 770
HpyF3I CTNAG 2 cut(s) 363, 768
HpySE526I ACGT 1 cut(s) 960
Hsp92II CATG 3 cut(s) 206, 518, 817
Kpn2I TCCGGA 1 cut(s) 78
KpnI GGTACC 1 cut(s) 718
Ksp22I TGATCA 1 cut(s) 10
KspI CCGCGG 1 cut(s) 124
Kzo9I GATC 3 cut(s) 10, 196, 728
LmnI GCTCC 3 cut(s) 81, 760, 769
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 2 cut(s) 45, 472
MaeI CTAG 5 cut(s) 138, 191, 447, 651, 956
MaeII ACGT 1 cut(s) 960
MaeIII GTNAC 3 cut(s) 403, 463, 575
MalI GATC 3 cut(s) 12, 198, 730
MboI GATC 3 cut(s) 10, 196, 728
MboII GAAGA 6 cut(s) 68, 165, 206, 340, 638, 1003
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 2 cut(s) 196, 728
MhlI GDGCHC 2 cut(s) 104, 864
MluCI AATT 4 cut(s) 240, 601, 759, 1000
MlyI GAGTC 1 cut(s) 161
MroI TCCGGA 1 cut(s) 78
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 2 cut(s) 123, 179
MspI CCGG 3 cut(s) 79, 596, 723
MspR9I CCNGG 1 cut(s) 775
MunI CAATTG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 775
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 185, 761, 770
NdeI CATATG 1 cut(s) 637
NdeII GATC 3 cut(s) 10, 196, 728
NlaIII CATG 3 cut(s) 206, 518, 817
NlaIV GGNNCC 5 cut(s) 91, 127, 694, 716, 915
NspI RCATGY 1 cut(s) 817
OliI CACNNNNGTG 1 cut(s) 95
PagI TCATGA 1 cut(s) 514
PaqCI CACCTGC 1 cut(s) 827
PceI AGGCCT 1 cut(s) 773
PfeI GAWTC 7 cut(s) 208, 355, 643, 739, 853, 886, 965
PinAI ACCGGT 1 cut(s) 595
PkrI GCNGC 2 cut(s) 125, 504
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PsiI TTATAA 1 cut(s) 666
Psp6I CCWGG 1 cut(s) 773
PspGI CCWGG 1 cut(s) 773
PspN4I GGNNCC 5 cut(s) 91, 127, 694, 716, 915
PspPI GGNCC 2 cut(s) 118, 677
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 2 cut(s) 196, 728
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 265, 716
RsaNI GTAC 2 cut(s) 264, 715
RseI CAYNNNNRTG 1 cut(s) 95
SacII CCGCGG 1 cut(s) 124
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 124, 503
Sau3AI GATC 3 cut(s) 10, 196, 728
Sau96I GGNCC 2 cut(s) 118, 677
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 775
SduI GDGCHC 2 cut(s) 104, 864
SfaNI GCATC 2 cut(s) 45, 472
Sfr303I CCGCGG 1 cut(s) 124
SgrBI CCGCGG 1 cut(s) 124
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 4 cut(s) 240, 601, 759, 1000
SseBI AGGCCT 1 cut(s) 773
SsiI CCGC 5 cut(s) 121, 123, 439, 708, 947
SspMI CTAG 5 cut(s) 138, 191, 447, 651, 956
StuI AGGCCT 1 cut(s) 773
StyD4I CCNGG 1 cut(s) 773
StyI CCWWGG 2 cut(s) 114, 446
TaaI ACNGT 5 cut(s) 94, 575, 584, 866, 980
TaiI ACGT 1 cut(s) 963
TaqI TCGA 1 cut(s) 884
TaqII GACCGA 1 cut(s) 94
TasI AATT 4 cut(s) 240, 601, 759, 1000
TatI WGTACW 1 cut(s) 263
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 7 cut(s) 208, 355, 643, 739, 853, 886, 965
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 4 cut(s) 69, 589, 703, 985
TseI GCWGC 1 cut(s) 502
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 4 cut(s) 69, 589, 703, 985
VpaK11BI GGWCC 1 cut(s) 118
XagI CCTNNNNNAGG 1 cut(s) 723
XapI RAATTY 1 cut(s) 1000
XceI RCATGY 1 cut(s) 817
XmaJI CCTAGG 1 cut(s) 446
XspI CTAG 5 cut(s) 138, 191, 447, 651, 956
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.