Indole-3-acetic acid-amido synthetase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G59500 AT2G23170 AT4G37390 |
| fragaria_vesca | FvH4_1g16980 |
| malus_domestica | MD02G1180300.v1.1 MD15G1290900.v1.1 |
| prunus_persica | Prupe.6G226100_v2.0.a1 |
| pyrus_communis | pycom02g14600 pycom15g25440 |
| rosa_laevigata | RLG00000017554 |
| rosa_multiflora | Rmu_sc0002945.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00136610 |
| rosa_rugosa | Rorug02G0140200 |
| rosa_samantha | Rh2CG196000 |
| rosa_wichuraiana | Rw2G015090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 3 cut(s) | 388, 557, 1789 |
| AccB1I | GGYRCC | 1 cut(s) | 185 |
| AccBSI | CCGCTC | 1 cut(s) | 1274 |
| AccI | GTMKAC | 4 cut(s) | 485, 573, 626, 1412 |
| AccII | CGCG | 2 cut(s) | 1214, 1553 |
| AciI | CCGC | 6 cut(s) | 680, 978, 1214, 1272, 1553, 1766 |
| AcsI | RAATTY | 2 cut(s) | 1103, 1286 |
| AcuI | CTGAAG | 1 cut(s) | 532 |
| AcvI | CACGTG | 1 cut(s) | 1400 |
| AcyI | GRCGYC | 3 cut(s) | 385, 554, 1786 |
| AfaI | GTAC | 2 cut(s) | 917, 971 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 106, 195, 964, 1090, 1215 |
| AflIII | ACRYGT | 3 cut(s) | 1397, 1399, 1606 |
| AgsI | TTSAA | 9 cut(s) | 23, 113, 208, 244, 257, 368, 820, 1285, 1322 |
| AhlI | ACTAGT | 2 cut(s) | 524, 578 |
| AjnI | CCWGG | 1 cut(s) | 1441 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 108, 140 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 754, 786 |
| AluBI | AGCT | 9 cut(s) | 324, 391, 518, 714, 1162, 1166, 1419, 1468, 1636 |
| AluI | AGCT | 9 cut(s) | 324, 391, 518, 714, 1162, 1166, 1419, 1468, 1636 |
| Alw21I | GWGCWC | 1 cut(s) | 1638 |
| Alw26I | GTCTC | 5 cut(s) | 47, 618, 650, 701, 1473 |
| Ama87I | CYCGRG | 2 cut(s) | 1654, 1687 |
| AoxI | GGCC | 2 cut(s) | 902, 1092 |
| ApoI | RAATTY | 2 cut(s) | 1103, 1286 |
| AseI | ATTAAT | 2 cut(s) | 353, 1671 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 120, 170, 203 |
| AspLEI | GCGC | 1 cut(s) | 657 |
| AspS9I | GGNCC | 3 cut(s) | 762, 1592, 1684 |
| AsuC2I | CCSGG | 2 cut(s) | 435, 760 |
| AsuHPI | GGTGA | 4 cut(s) | 30, 73, 284, 298 |
| AsuII | TTCGAA | 1 cut(s) | 1101 |
| AsuNHI | GCTAGC | 1 cut(s) | 1162 |
| AvaI | CYCGRG | 2 cut(s) | 1654, 1687 |
| AvaII | GGWCC | 3 cut(s) | 762, 1592, 1684 |
| AxyI | CCTNAGG | 1 cut(s) | 585 |
| BanI | GGYRCC | 1 cut(s) | 185 |
| BanII | GRGCYC | 2 cut(s) | 1221, 1638 |
| BbrPI | CACGTG | 1 cut(s) | 1400 |
| BbsI | GAAGAC | 4 cut(s) | 251, 285, 378, 1439 |
| Bbv12I | GWGCWC | 1 cut(s) | 1638 |
| BccI | CCATC | 7 cut(s) | 25, 311, 602, 1118, 1124, 1528, 1658 |
| BceAI | ACGGC | 2 cut(s) | 173, 1636 |
| BciT130I | CCWGG | 1 cut(s) | 1443 |
| BclI | TGATCA | 3 cut(s) | 784, 829, 1200 |
| BcnI | CCSGG | 2 cut(s) | 435, 760 |
| BcoDI | GTCTC | 5 cut(s) | 47, 618, 650, 701, 1473 |
| BcuI | ACTAGT | 2 cut(s) | 524, 578 |
| BfaI | CTAG | 5 cut(s) | 525, 579, 1163, 1500, 1731 |
| BfmI | CTRYAG | 1 cut(s) | 973 |
| BisI | GCNGC | 1 cut(s) | 1766 |
| BlpI | GCTNAGC | 1 cut(s) | 1313 |
| BlsI | GCNGC | 1 cut(s) | 1767 |
| BmcAI | AGTACT | 1 cut(s) | 971 |
| Bme1390I | CCNGG | 3 cut(s) | 435, 760, 1443 |
| Bme18I | GGWCC | 3 cut(s) | 762, 1592, 1684 |
| BmeT110I | CYCGRG | 2 cut(s) | 1654, 1687 |
| BmgT120I | GGNCC | 3 cut(s) | 762, 1592, 1684 |
| BmiI | GGNNCC | 5 cut(s) | 98, 187, 763, 764, 1686 |
| BmrFI | CCNGG | 3 cut(s) | 435, 760, 1443 |
| BmrI | ACTGGG | 1 cut(s) | 1471 |
| BmtI | GCTAGC | 1 cut(s) | 1166 |
| BmuI | ACTGGG | 1 cut(s) | 1471 |
| BpiI | GAAGAC | 4 cut(s) | 251, 285, 378, 1439 |
| BpmI | CTGGAG | 1 cut(s) | 704 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1313 |
| Bpu14I | TTCGAA | 1 cut(s) | 1101 |
| BpuEI | CTTGAG | 1 cut(s) | 56 |
| BpuMI | CCSGG | 2 cut(s) | 435, 760 |
| Bsa29I | ATCGAT | 1 cut(s) | 1667 |
| BsaAI | YACGTR | 4 cut(s) | 430, 1400, 1453, 1607 |
| BsaHI | GRCGYC | 3 cut(s) | 385, 554, 1786 |
| BsaI | GGTCTC | 3 cut(s) | 650, 701, 1473 |
| BsaJI | CCNNGG | 2 cut(s) | 1059, 1688 |
| BsaWI | WCCGGW | 1 cut(s) | 220 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1355, 1385 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 106, 195, 964, 1090, 1215 |
| Bse118I | RCCGGY | 1 cut(s) | 505 |
| Bse1I | ACTGG | 3 cut(s) | 843, 940, 1466 |
| Bse21I | CCTNAGG | 1 cut(s) | 585 |
| Bse3DI | GCAATG | 2 cut(s) | 948, 1495 |
| BseBI | CCWGG | 1 cut(s) | 1443 |
| BseCI | ATCGAT | 1 cut(s) | 1667 |
| BseDI | CCNNGG | 2 cut(s) | 1059, 1688 |
| BseGI | GGATG | 4 cut(s) | 36, 298, 594, 1013 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 106, 195, 964, 1090, 1215 |
| BseMI | GCAATG | 2 cut(s) | 948, 1495 |
| BseMII | CTCAG | 4 cut(s) | 42, 758, 834, 939 |
| BseNI | ACTGG | 3 cut(s) | 843, 940, 1466 |
| BseRI | GAGGAG | 4 cut(s) | 98, 689, 1149, 1646 |
| BsgI | GTGCAG | 1 cut(s) | 1634 |
| Bsh1236I | CGCG | 2 cut(s) | 1214, 1553 |
| BshFI | GGCC | 2 cut(s) | 904, 1094 |
| BshNI | GGYRCC | 1 cut(s) | 185 |
| BshVI | ATCGAT | 1 cut(s) | 1667 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1638 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1654, 1687 |
| BsiSI | CCGG | 4 cut(s) | 221, 434, 506, 759 |
| BslFI | GGGAC | 2 cut(s) | 775, 1670 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 106, 195, 964, 1090, 1215 |
| BsmAI | GTCTC | 5 cut(s) | 47, 618, 650, 701, 1473 |
| BsmBI | CGTCTC | 1 cut(s) | 618 |
| BsmFI | GGGAC | 2 cut(s) | 775, 1670 |
| BsmI | GAATGC | 1 cut(s) | 1372 |
| BsnI | GGCC | 2 cut(s) | 904, 1094 |
| Bso31I | GGTCTC | 3 cut(s) | 650, 701, 1473 |
| BsoBI | CYCGRG | 2 cut(s) | 1654, 1687 |
| Bsp119I | TTCGAA | 1 cut(s) | 1101 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1221, 1638 |
| Bsp143I | GATC | 8 cut(s) | 175, 274, 285, 784, 829, 1200, 1404, 1710 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1313 |
| BspACI | CCGC | 6 cut(s) | 680, 978, 1214, 1272, 1553, 1766 |
| BspANI | GGCC | 2 cut(s) | 904, 1094 |
| BspCNI | CTCAG | 4 cut(s) | 43, 757, 835, 940 |
| BspDI | ATCGAT | 1 cut(s) | 1667 |
| BspFNI | CGCG | 2 cut(s) | 1214, 1553 |
| BspHI | TCATGA | 1 cut(s) | 1713 |
| BspLI | GGNNCC | 5 cut(s) | 98, 187, 763, 764, 1686 |
| BspOI | GCTAGC | 1 cut(s) | 1166 |
| BspQI | GCTCTTC | 1 cut(s) | 1500 |
| BspT104I | TTCGAA | 1 cut(s) | 1101 |
| BspT107I | GGYRCC | 1 cut(s) | 185 |
| BspTNI | GGTCTC | 3 cut(s) | 650, 701, 1473 |
| BsrBI | CCGCTC | 1 cut(s) | 1274 |
| BsrDI | GCAATG | 2 cut(s) | 948, 1495 |
| BsrFI | RCCGGY | 1 cut(s) | 505 |
| BsrI | ACTGG | 3 cut(s) | 843, 940, 1466 |
| BssAI | RCCGGY | 1 cut(s) | 505 |
| BssECI | CCNNGG | 2 cut(s) | 1059, 1688 |
| BssMI | GATC | 8 cut(s) | 175, 274, 285, 784, 829, 1200, 1404, 1710 |
| BssNAI | GTATAC | 2 cut(s) | 627, 1413 |
| BssNI | GRCGYC | 3 cut(s) | 385, 554, 1786 |
| Bst1107I | GTATAC | 2 cut(s) | 627, 1413 |
| Bst2UI | CCWGG | 1 cut(s) | 1443 |
| Bst4CI | ACNGT | 4 cut(s) | 171, 272, 1226, 1281 |
| Bst6I | CTCTTC | 1 cut(s) | 1500 |
| BstACI | GRCGYC | 3 cut(s) | 385, 554, 1786 |
| BstBAI | YACGTR | 4 cut(s) | 430, 1400, 1453, 1607 |
| BstBI | TTCGAA | 1 cut(s) | 1101 |
| BstC8I | GCNNGC | 4 cut(s) | 340, 997, 1164, 1383 |
| BstEII | GGTNACC | 2 cut(s) | 501, 984 |
| BstF5I | GGATG | 4 cut(s) | 36, 298, 594, 1013 |
| BstFNI | CGCG | 2 cut(s) | 1214, 1553 |
| BstHHI | GCGC | 1 cut(s) | 657 |
| BstKTI | GATC | 8 cut(s) | 178, 277, 288, 787, 832, 1203, 1407, 1713 |
| BstMAI | GTCTC | 5 cut(s) | 47, 618, 650, 701, 1473 |
| BstMBI | GATC | 8 cut(s) | 175, 274, 285, 784, 829, 1200, 1404, 1710 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 515, 1387, 1774 |
| BstNI | CCWGG | 1 cut(s) | 1443 |
| BstNSI | RCATGY | 1 cut(s) | 625 |
| BstPI | GGTNACC | 2 cut(s) | 501, 984 |
| BstSCI | CCNGG | 3 cut(s) | 433, 758, 1441 |
| BstSFI | CTRYAG | 1 cut(s) | 973 |
| BstSNI | TACGTA | 1 cut(s) | 1453 |
| BstUI | CGCG | 2 cut(s) | 1214, 1553 |
| BstV2I | GAAGAC | 4 cut(s) | 251, 285, 378, 1439 |
| BstZ17I | GTATAC | 2 cut(s) | 627, 1413 |
| Bsu15I | ATCGAT | 1 cut(s) | 1667 |
| Bsu36I | CCTNAGG | 1 cut(s) | 585 |
| BsuRI | GGCC | 2 cut(s) | 904, 1094 |
| BsuTUI | ATCGAT | 1 cut(s) | 1667 |
| BtsCI | GGATG | 4 cut(s) | 36, 298, 594, 1013 |
| BtsI | GCAGTG | 1 cut(s) | 1365 |
| BtsIMutI | CAGTG | 1 cut(s) | 1365 |
| Cac8I | GCNNGC | 4 cut(s) | 340, 997, 1164, 1383 |
| CciI | TCATGA | 1 cut(s) | 1713 |
| CfoI | GCGC | 1 cut(s) | 657 |
| Cfr10I | RCCGGY | 1 cut(s) | 505 |
| Cfr13I | GGNCC | 3 cut(s) | 762, 1592, 1684 |
| ClaI | ATCGAT | 1 cut(s) | 1667 |
| CpoI | CGGWCCG | 1 cut(s) | 1592 |
| CseI | GACGC | 2 cut(s) | 559, 1359 |
| CsiI | ACCWGGT | 1 cut(s) | 1441 |
| Csp6I | GTAC | 2 cut(s) | 916, 970 |
| CspI | CGGWCCG | 1 cut(s) | 1592 |
| CviAII | CATG | 9 cut(s) | 409, 622, 659, 788, 1000, 1090, 1513, 1639, 1714 |
| CviQI | GTAC | 2 cut(s) | 916, 970 |
| DpnI | GATC | 8 cut(s) | 177, 276, 287, 786, 831, 1202, 1406, 1712 |
| DpnII | GATC | 8 cut(s) | 175, 274, 285, 784, 829, 1200, 1404, 1710 |
| Eam1104I | CTCTTC | 1 cut(s) | 1500 |
| EarI | CTCTTC | 1 cut(s) | 1500 |
| Ecl136II | GAGCTC | 1 cut(s) | 1636 |
| Eco105I | TACGTA | 1 cut(s) | 1453 |
| Eco24I | GRGCYC | 2 cut(s) | 1221, 1638 |
| Eco31I | GGTCTC | 3 cut(s) | 650, 701, 1473 |
| Eco32I | GATATC | 1 cut(s) | 751 |
| Eco47I | GGWCC | 3 cut(s) | 762, 1592, 1684 |
| Eco53kI | GAGCTC | 1 cut(s) | 1636 |
| Eco57I | CTGAAG | 1 cut(s) | 532 |
| Eco72I | CACGTG | 1 cut(s) | 1400 |
| Eco81I | CCTNAGG | 1 cut(s) | 585 |
| Eco88I | CYCGRG | 2 cut(s) | 1654, 1687 |
| Eco91I | GGTNACC | 2 cut(s) | 501, 984 |
| EcoICRI | GAGCTC | 1 cut(s) | 1636 |
| EcoO109I | RGGNCCY | 2 cut(s) | 762, 1684 |
| EcoO65I | GGTNACC | 2 cut(s) | 501, 984 |
| EcoRI | GAATTC | 1 cut(s) | 1103 |
| EcoRII | CCWGG | 1 cut(s) | 1441 |
| EcoRV | GATATC | 1 cut(s) | 751 |
| EcoT38I | GRGCYC | 2 cut(s) | 1221, 1638 |
| Esp3I | CGTCTC | 1 cut(s) | 618 |
| FaeI | CATG | 9 cut(s) | 412, 625, 662, 791, 1003, 1093, 1516, 1642, 1717 |
| FaqI | GGGAC | 2 cut(s) | 775, 1670 |
| FatI | CATG | 9 cut(s) | 408, 621, 658, 787, 999, 1089, 1512, 1638, 1713 |
| FauI | CCCGC | 1 cut(s) | 1207 |
| FbaI | TGATCA | 3 cut(s) | 784, 829, 1200 |
| FblI | GTMKAC | 4 cut(s) | 485, 573, 626, 1412 |
| Fnu4HI | GCNGC | 1 cut(s) | 1766 |
| FokI | GGATG | 4 cut(s) | 43, 285, 581, 1000 |
| FriOI | GRGCYC | 2 cut(s) | 1221, 1638 |
| Fsp4HI | GCNGC | 1 cut(s) | 1766 |
| FspBI | CTAG | 5 cut(s) | 525, 579, 1163, 1500, 1731 |
| GlaI | GCGC | 1 cut(s) | 656 |
| GluI | GCNGC | 1 cut(s) | 1766 |
| GsuI | CTGGAG | 1 cut(s) | 704 |
| HaeIII | GGCC | 2 cut(s) | 904, 1094 |
| HapII | CCGG | 4 cut(s) | 221, 434, 506, 759 |
| HgaI | GACGC | 2 cut(s) | 559, 1359 |
| HhaI | GCGC | 1 cut(s) | 657 |
| Hin1I | GRCGYC | 3 cut(s) | 385, 554, 1786 |
| Hin1II | CATG | 9 cut(s) | 412, 625, 662, 791, 1003, 1093, 1516, 1642, 1717 |
| Hin6I | GCGC | 1 cut(s) | 655 |
| HinP1I | GCGC | 1 cut(s) | 655 |
| HincII | GTYRAC | 1 cut(s) | 667 |
| HindII | GTYRAC | 1 cut(s) | 667 |
| HindIII | AAGCTT | 1 cut(s) | 712 |
| HpaI | GTTAAC | 1 cut(s) | 667 |
| HpaII | CCGG | 4 cut(s) | 221, 434, 506, 759 |
| HphI | GGTGA | 4 cut(s) | 30, 73, 284, 298 |
| Hpy166II | GTNNAC | 6 cut(s) | 486, 574, 627, 667, 1055, 1413 |
| Hpy8I | GTNNAC | 6 cut(s) | 486, 574, 627, 667, 1055, 1413 |
| Hpy99I | CGWCG | 5 cut(s) | 46, 387, 559, 1375, 1788 |
| HpyAV | CCTTC | 5 cut(s) | 58, 699, 727, 875, 1767 |
| HpyCH4III | ACNGT | 4 cut(s) | 171, 272, 1226, 1281 |
| HpyCH4IV | ACGT | 9 cut(s) | 259, 385, 429, 554, 1399, 1452, 1606, 1625, 1786 |
| HpyCH4V | TGCA | 3 cut(s) | 941, 1385, 1615 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 515, 1387, 1774 |
| HpySE526I | ACGT | 9 cut(s) | 259, 385, 429, 554, 1399, 1452, 1606, 1625, 1786 |
| Hsp92I | GRCGYC | 3 cut(s) | 385, 554, 1786 |
| Hsp92II | CATG | 9 cut(s) | 412, 625, 662, 791, 1003, 1093, 1516, 1642, 1717 |
| HspAI | GCGC | 1 cut(s) | 655 |
| KflI | GGGWCCC | 1 cut(s) | 762 |
| Ksp22I | TGATCA | 3 cut(s) | 784, 829, 1200 |
| KspAI | GTTAAC | 1 cut(s) | 667 |
| Kzo9I | GATC | 8 cut(s) | 175, 274, 285, 784, 829, 1200, 1404, 1710 |
| LguI | GCTCTTC | 1 cut(s) | 1500 |
| LmnI | GCTCC | 4 cut(s) | 1159, 1279, 1465, 1633 |
| MabI | ACCWGGT | 1 cut(s) | 1441 |
| MaeI | CTAG | 5 cut(s) | 525, 579, 1163, 1500, 1731 |
| MaeII | ACGT | 9 cut(s) | 259, 385, 429, 554, 1399, 1452, 1606, 1625, 1786 |
| MalI | GATC | 8 cut(s) | 177, 276, 287, 786, 831, 1202, 1406, 1712 |
| MbiI | CCGCTC | 1 cut(s) | 1274 |
| MboI | GATC | 8 cut(s) | 175, 274, 285, 784, 829, 1200, 1404, 1710 |
| MfeI | CAATTG | 2 cut(s) | 363, 727 |
| MhlI | GDGCHC | 2 cut(s) | 1221, 1638 |
| MluCI | AATT | 7 cut(s) | 350, 363, 727, 874, 1103, 1267, 1286 |
| MlyI | GAGTC | 5 cut(s) | 98, 491, 602, 666, 1721 |
| MmeI | TCCRAC | 6 cut(s) | 291, 459, 537, 945, 1159, 1578 |
| MroXI | GAANNNNTTC | 3 cut(s) | 120, 170, 203 |
| MseI | TTAA | 7 cut(s) | 180, 353, 650, 666, 795, 1035, 1671 |
| MslI | CAYNNNNRTG | 1 cut(s) | 413 |
| MspI | CCGG | 4 cut(s) | 221, 434, 506, 759 |
| MspR9I | CCNGG | 3 cut(s) | 435, 760, 1443 |
| MunI | CAATTG | 2 cut(s) | 363, 727 |
| Mva1269I | GAATGC | 1 cut(s) | 1372 |
| MvaI | CCWGG | 1 cut(s) | 1443 |
| MvnI | CGCG | 2 cut(s) | 1214, 1553 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 515, 1387, 1774 |
| NciI | CCSGG | 2 cut(s) | 435, 760 |
| NdeII | GATC | 8 cut(s) | 175, 274, 285, 784, 829, 1200, 1404, 1710 |
| NheI | GCTAGC | 1 cut(s) | 1162 |
| NlaIII | CATG | 9 cut(s) | 412, 625, 662, 791, 1003, 1093, 1516, 1642, 1717 |
| NlaIV | GGNNCC | 5 cut(s) | 98, 187, 763, 764, 1686 |
| NmuCI | GTSAC | 3 cut(s) | 605, 1252, 1502 |
| NspI | RCATGY | 1 cut(s) | 625 |
| NspV | TTCGAA | 1 cut(s) | 1101 |
| PaeR7I | CTCGAG | 1 cut(s) | 1654 |
| PagI | TCATGA | 1 cut(s) | 1713 |
| PciSI | GCTCTTC | 1 cut(s) | 1500 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 485 |
| PctI | GAATGC | 1 cut(s) | 1372 |
| PdmI | GAANNNNTTC | 3 cut(s) | 120, 170, 203 |
| PfeI | GAWTC | 5 cut(s) | 11, 421, 560, 1322, 1541 |
| PflFI | GACNNNGTC | 3 cut(s) | 569, 1508, 1566 |
| PkrI | GCNGC | 1 cut(s) | 1767 |
| PleI | GAGTC | 5 cut(s) | 98, 490, 602, 666, 1721 |
| PmaCI | CACGTG | 1 cut(s) | 1400 |
| PmlI | CACGTG | 1 cut(s) | 1400 |
| PpsI | GAGTC | 5 cut(s) | 98, 490, 602, 666, 1721 |
| Ppu21I | YACGTR | 4 cut(s) | 430, 1400, 1453, 1607 |
| PpuMI | RGGWCCY | 2 cut(s) | 762, 1684 |
| PshBI | ATTAAT | 2 cut(s) | 353, 1671 |
| Psp124BI | GAGCTC | 1 cut(s) | 1638 |
| Psp5II | RGGWCCY | 2 cut(s) | 762, 1684 |
| Psp6I | CCWGG | 1 cut(s) | 1441 |
| PspCI | CACGTG | 1 cut(s) | 1400 |
| PspEI | GGTNACC | 2 cut(s) | 501, 984 |
| PspGI | CCWGG | 1 cut(s) | 1441 |
| PspN4I | GGNNCC | 5 cut(s) | 98, 187, 763, 764, 1686 |
| PspPI | GGNCC | 3 cut(s) | 762, 1592, 1684 |
| PspPPI | RGGWCCY | 2 cut(s) | 762, 1684 |
| PsyI | GACNNNGTC | 3 cut(s) | 569, 1508, 1566 |
| RsaI | GTAC | 2 cut(s) | 917, 971 |
| RsaNI | GTAC | 2 cut(s) | 916, 970 |
| RseI | CAYNNNNRTG | 1 cut(s) | 413 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1592 |
| RsrII | CGGWCCG | 1 cut(s) | 1592 |
| SacI | GAGCTC | 1 cut(s) | 1638 |
| SapI | GCTCTTC | 1 cut(s) | 1500 |
| SaqAI | TTAA | 7 cut(s) | 180, 353, 650, 666, 795, 1035, 1671 |
| SatI | GCNGC | 1 cut(s) | 1766 |
| Sau3AI | GATC | 8 cut(s) | 175, 274, 285, 784, 829, 1200, 1404, 1710 |
| Sau96I | GGNCC | 3 cut(s) | 762, 1592, 1684 |
| ScaI | AGTACT | 1 cut(s) | 971 |
| SchI | GAGTC | 5 cut(s) | 98, 491, 602, 666, 1721 |
| ScrFI | CCNGG | 3 cut(s) | 435, 760, 1443 |
| SduI | GDGCHC | 2 cut(s) | 1221, 1638 |
| SexAI | ACCWGGT | 1 cut(s) | 1441 |
| SfcI | CTRYAG | 1 cut(s) | 973 |
| Sfr274I | CTCGAG | 1 cut(s) | 1654 |
| SfuI | TTCGAA | 1 cut(s) | 1101 |
| SinI | GGWCC | 3 cut(s) | 762, 1592, 1684 |
| SlaI | CTCGAG | 1 cut(s) | 1654 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 413 |
| SmlI | CTYRAG | 2 cut(s) | 71, 1654 |
| SmoI | CTYRAG | 2 cut(s) | 71, 1654 |
| SnaBI | TACGTA | 1 cut(s) | 1453 |
| SpeI | ACTAGT | 2 cut(s) | 524, 578 |
| Sse9I | AATT | 7 cut(s) | 350, 363, 727, 874, 1103, 1267, 1286 |
| SsiI | CCGC | 6 cut(s) | 680, 978, 1214, 1272, 1553, 1766 |
| SspI | AATATT | 1 cut(s) | 814 |
| SspMI | CTAG | 5 cut(s) | 525, 579, 1163, 1500, 1731 |
| SstI | GAGCTC | 1 cut(s) | 1638 |
| StyD4I | CCNGG | 3 cut(s) | 433, 758, 1441 |
| TaaI | ACNGT | 4 cut(s) | 171, 272, 1226, 1281 |
| TaiI | ACGT | 9 cut(s) | 262, 388, 432, 557, 1402, 1455, 1609, 1628, 1789 |
| TaqI | TCGA | 9 cut(s) | 149, 174, 802, 809, 1101, 1373, 1407, 1655, 1667 |
| TaqII | GACCGA | 1 cut(s) | 1580 |
| TasI | AATT | 7 cut(s) | 350, 363, 727, 874, 1103, 1267, 1286 |
| TatI | WGTACW | 1 cut(s) | 969 |
| TauI | GCSGC | 1 cut(s) | 1768 |
| TfiI | GAWTC | 5 cut(s) | 11, 421, 560, 1322, 1541 |
| Tru1I | TTAA | 7 cut(s) | 180, 353, 650, 666, 795, 1035, 1671 |
| Tru9I | TTAA | 7 cut(s) | 180, 353, 650, 666, 795, 1035, 1671 |
| TscAI | CASTG | 1 cut(s) | 1365 |
| TseFI | GTSAC | 3 cut(s) | 605, 1252, 1502 |
| Tsp45I | GTSAC | 3 cut(s) | 605, 1252, 1502 |
| TspDTI | ATGAA | 9 cut(s) | 67, 434, 675, 1002, 1206, 1253, 1279, 1653, 1730 |
| TspGWI | ACGGA | 5 cut(s) | 170, 263, 692, 1309, 1584 |
| TspRI | CASTG | 1 cut(s) | 1365 |
| Tth111I | GACNNNGTC | 3 cut(s) | 569, 1508, 1566 |
| VpaK11BI | GGWCC | 3 cut(s) | 762, 1592, 1684 |
| VspI | ATTAAT | 2 cut(s) | 353, 1671 |
| XapI | RAATTY | 2 cut(s) | 1103, 1286 |
| XbaI | TCTAGA | 1 cut(s) | 1730 |
| XceI | RCATGY | 1 cut(s) | 625 |
| XhoI | CTCGAG | 1 cut(s) | 1654 |
| XmiI | GTMKAC | 4 cut(s) | 485, 573, 626, 1412 |
| XmnI | GAANNNNTTC | 3 cut(s) | 120, 170, 203 |
| XspI | CTAG | 5 cut(s) | 525, 579, 1163, 1500, 1731 |
| ZraI | GACGTC | 3 cut(s) | 386, 555, 1787 |
| ZrmI | AGTACT | 1 cut(s) | 971 |