Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020969

Physical Location & Seq

Genomic Coordinates Reverse (-)

22395003 .. 22396133

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTACAACCAGGAGGCACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGCTGATGACCTTAGAGACGATGCAGAATATGCAGACATAATGGAGGACATGAGCCAAGAAGGTGGTAAATTCGGTAACTTGGTGAATGTTGTGATTCCGAGGCCTAATCCAGATCATGACCCAACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGCCAGATCGGGGATGAATGGAAGAAAATTTGGAGGAAACCAAGTAGTGGCTGTGTATTACCCCGAAGACAAGTATGCCCAAGGCGACTACGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

111

Amino Acids

12.04

Weight (kDa)

4.38

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60830 AT1G60830
pyrus_communis	pycom10g24930
rosa_multiflora	Rmu_co8118650.1_g000001 Rmu_sc0039049.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	191, 283
AciI	CCGC	1 cut(s)	215
AcsI	RAATTY	2 cut(s)	125, 263
AfiI	CCNNNNNNNGG	4 cut(s)	185, 191, 246, 283
AjnI	CCWGG	2 cut(s)	10, 184
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	66
AoxI	GGCC	2 cut(s)	158, 237
ApoI	RAATTY	2 cut(s)	125, 263
Asp700I	GAANNNNTTC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	309
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	12, 186
BcoDI	GTCTC	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	12, 186
BmrFI	CCNGG	2 cut(s)	12, 186
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	155, 316
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 191, 246, 283
BseBI	CCWGG	2 cut(s)	12, 186
BseDI	CCNNGG	2 cut(s)	155, 316
BseGI	GGATG	3 cut(s)	223, 229, 255
BseLI	CCNNNNNNNGG	4 cut(s)	185, 191, 246, 283
BshFI	GGCC	2 cut(s)	160, 239
BslI	CCNNNNNNNGG	4 cut(s)	185, 191, 246, 283
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	160, 239
Bsp143I	GATC	2 cut(s)	169, 242
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	2 cut(s)	160, 239
BspHI	TCATGA	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	155, 316
BssMI	GATC	2 cut(s)	169, 242
BssT1I	CCWWGG	1 cut(s)	316
Bst2UI	CCWGG	2 cut(s)	12, 186
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	68, 205
BstF5I	GGATG	3 cut(s)	223, 229, 255
BstKTI	GATC	2 cut(s)	172, 245
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	169, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	2 cut(s)	12, 186
BstSCI	CCNGG	2 cut(s)	10, 184
BstV2I	GAAGAC	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	160, 239
BtsCI	GGATG	3 cut(s)	223, 229, 255
CciI	TCATGA	1 cut(s)	172
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	2 cut(s)	106, 173
CviJI	RGCY	6 cut(s)	59, 111, 160, 228, 239, 287
CviKI_1	RGCY	6 cut(s)	59, 111, 160, 228, 239, 287
DdeI	CTNAG	2 cut(s)	68, 205
DpnI	GATC	2 cut(s)	171, 244
DpnII	GATC	2 cut(s)	169, 242
Eco130I	CCWWGG	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	10, 184
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	2 cut(s)	109, 176
FaiI	YATR	6 cut(s)	87, 95, 107, 174, 213, 312
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	2 cut(s)	105, 172
FokI	GGATG	3 cut(s)	230, 236, 262
HaeIII	GGCC	2 cut(s)	160, 239
Hin1II	CATG	2 cut(s)	109, 176
HinfI	GANTC	2 cut(s)	43, 151
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	167, 173
HpyAV	CCTTC	2 cut(s)	110, 190
HpyCH4V	TGCA	2 cut(s)	80, 89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	68, 205
Hsp92II	CATG	2 cut(s)	109, 176
Kzo9I	GATC	2 cut(s)	169, 242
LpnPI	CCDG	5 cut(s)	24, 171, 180, 198, 253
LweI	GCATC	1 cut(s)	67
MaeIII	GTNAC	3 cut(s)	3, 52, 131
MalI	GATC	2 cut(s)	171, 244
MboI	GATC	2 cut(s)	169, 242
MboII	GAAGA	2 cut(s)	270, 314
MluCI	AATT	2 cut(s)	125, 263
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	8, 94, 150, 263
MroXI	GAANNNNTTC	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	12, 186
MvaI	CCWGG	2 cut(s)	12, 186
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	2 cut(s)	169, 242
NlaIII	CATG	2 cut(s)	109, 176
PagI	TCATGA	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	2 cut(s)	191, 283
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	10, 184
PspGI	CCWGG	2 cut(s)	10, 184
PvuII	CAGCTG	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	169, 242
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	12, 186
SetI	ASST	4 cut(s)	61, 69, 121, 201
SfaNI	GCATC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	125, 263
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	215
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	10, 184
StyI	CCWWGG	1 cut(s)	316
TasI	AATT	2 cut(s)	125, 263
TfiI	GAWTC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	266
Van91I	CCANNNNNTGG	2 cut(s)	191, 283
XapI	RAATTY	2 cut(s)	125, 263
XmnI	GAANNNNTTC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.