Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014012

Physical Location & Seq

Genomic Coordinates Forward (+)

23342211 .. 23344120

Gene Structure 1910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTTGCAGACGCAAACGGTTCATCATCAAGCTCATTTAACTTCCTAATCTACGGTAAAACCGGATGGATCGGTGGTTTACTCGGTAAACTCTGCGAAGCTCAAGGAATCACTTACACTTACGGCTCCGGTCGTCTTCAAGATCGTCAATCGATCGTCGCCGACATCGAATCCGTGAAACCTAGCCACGTGTTCAACGCTGCTGGAGTCACCGGTCGTCCTAATGTTGATTGGTGCGAATCTCACAAAGTTGAGACGATTCGTACTAATGTCGCCGGAACCCTAACTCTCGCTGACATTTGCAGAGAGAAAGGACTTGTTCTGATCAATTACGCTACGGGTTGTATATTTGAGTATGATTCGGGTCATCCTCTCGGGTCGGGTATTGGATTCAAGGAGGAGGATACTCCTAATTTCACCGGATCTTTCTACTCTAAAACCAAAGCTATGGTGGAGGAGCTGCTCAAGAACTATGAAAATGTATGCACGCTAAGAGTGCGAATGCCGATTTCATCGGATCTAACAAACCCGAGAAACTTCATCACGAAGATTGCTCGGTATGAGAAAGTTGTGGACATCCCAAACTCGATGACAATCCTCGATGAGCTTCTCCCGATATCAATCGAAATGGCGAAGAGGAACTTAACCGGGATCTACAATTTCACTAACCCGGGTGTTGTGAGCCACAACGAGATCTTGGAGATGTACAGAGACTACATTGACCCGAGTTTTACTTGGAAGAACTTCACATTGGAGGAACAAGCTAAAGTGATTGTGGCGCCAAGGAGTAACAATGAGCTTGATGCAACTAAGTTGAAGACTGAGTTCCCTGAGTTGATGTCTATCAAAGAGTCTCTGATCAAGTTCGTGTTTGAGCCCAACAAGAAGACTGAAGTTAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008830 GO:0008831 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010489 GO:0010490 GO:0010646 GO:0010817 GO:0010928 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0016857 GO:0018130 GO:0019305 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046383 GO:0046483 GO:0048046 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0055114 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 ko00523 ko01130 map00520 map00523 map01130

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

301

Amino Acids

33.6

Weight (kDa)

5.73

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	15 - 186	5e-15	RmlD substrate binding domain
Epimerase	PF01370	16 - 178	1e-13	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	39 - 182	4.3e-07	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63000
fragaria_vesca	FvH4_5g01300 FvH4_6g38001
malus_domestica	MD04G1069500.v1.1 MD06G1070600.v1.1
prunus_persica	Prupe.5G088400_v2.0.a1
pyrus_communis	pycom06g06970
rosa_chinensis	RchiOBHm_Chr7g0199641
rosa_laevigata	RLG00000003780
rosa_multiflora	Rmu_sc0009191.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256530
rosa_rugosa	Rorug07G0055500
rosa_samantha	Rh7AG180500 Rh7BG183500 Rh7CG190200 Rh7DG183400
rosa_wichuraiana	Rw7G015860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	778
AclWI	GGATC	4 cut(s)	77, 430, 525, 659
AcvI	CACGTG	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	779
AfaI	GTAC	2 cut(s)	265, 707
AflIII	ACRYGT	1 cut(s)	189
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	140, 196, 394, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
AluBI	AGCT	8 cut(s)	33, 101, 446, 460, 607, 764, 799, 902
AluI	AGCT	8 cut(s)	33, 101, 446, 460, 607, 764, 799, 902
Alw26I	GTCTC	3 cut(s)	248, 705, 858
AlwI	GGATC	4 cut(s)	77, 430, 525, 659
Ama87I	CYCGRG	4 cut(s)	374, 529, 670, 724
ApeKI	GCWGC	2 cut(s)	200, 460
AsiGI	ACCGGT	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	743
AspLEI	GCGC	1 cut(s)	781
AsuC2I	CCSGG	3 cut(s)	649, 671, 672
AsuHPI	GGTGA	2 cut(s)	202, 409
AvaI	CYCGRG	4 cut(s)	374, 529, 670, 724
BanI	GGYRCC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	879
BbrPI	CACGTG	1 cut(s)	190
BbsI	GAAGAC	3 cut(s)	128, 824, 893
BbvI	GCAGC	2 cut(s)	187, 447
BccI	CCATC	1 cut(s)	60
BceAI	ACGGC	1 cut(s)	139
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	2 cut(s)	324, 858
BcnI	CCSGG	3 cut(s)	649, 671, 672
BcoDI	GTCTC	3 cut(s)	248, 705, 858
BfaI	CTAG	1 cut(s)	183
BfoI	RGCGCY	1 cut(s)	782
BfuI	GTATCC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	2 cut(s)	201, 461
BlsI	GCNGC	2 cut(s)	202, 462
Bme1390I	CCNGG	3 cut(s)	649, 671, 672
BmeT110I	CYCGRG	4 cut(s)	374, 529, 670, 724
BmiI	GGNNCC	3 cut(s)	127, 280, 780
BmrFI	CCNGG	3 cut(s)	649, 671, 672
BmsI	GCATC	1 cut(s)	793
BpiI	GAAGAC	3 cut(s)	128, 824, 893
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	87, 449
BpuMI	CCSGG	3 cut(s)	649, 671, 672
Bsa29I	ATCGAT	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	190
BsaBI	GATNNNNATC	3 cut(s)	593, 620, 842
BsaHI	GRCGYC	1 cut(s)	779
BsaJI	CCNNGG	2 cut(s)	670, 782
BsaWI	WCCGGW	4 cut(s)	62, 128, 212, 419
Bse118I	RCCGGY	1 cut(s)	212
Bse8I	GATNNNNATC	3 cut(s)	593, 620, 842
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	670, 782
BseGI	GGATG	3 cut(s)	71, 367, 576
BseJI	GATNNNNATC	3 cut(s)	593, 620, 842
BseMII	CTCAG	2 cut(s)	813, 822
BseRI	GAGGAG	2 cut(s)	413, 470
BseXI	GCAGC	2 cut(s)	187, 447
Bsh1285I	CGRYCG	3 cut(s)	133, 156, 217
BshNI	GGYRCC	1 cut(s)	778
BshTI	ACCGGT	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	152
BsiEI	CGRYCG	3 cut(s)	133, 156, 217
BsiHKCI	CYCGRG	4 cut(s)	374, 529, 670, 724
BsiSI	CCGG	7 cut(s)	63, 129, 213, 276, 420, 648, 671
BsmAI	GTCTC	3 cut(s)	248, 705, 858
BsmBI	CGTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	507
BsoBI	CYCGRG	4 cut(s)	374, 529, 670, 724
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	9 cut(s)	69, 142, 153, 324, 422, 517, 651, 693, 858
BspCNI	CTCAG	2 cut(s)	814, 823
BspDI	ATCGAT	1 cut(s)	152
BspLI	GGNNCC	3 cut(s)	127, 280, 780
BspPI	GGATC	4 cut(s)	77, 430, 525, 659
BspT107I	GGYRCC	1 cut(s)	778
BsrFI	RCCGGY	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	705
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	670, 782
BssMI	GATC	9 cut(s)	69, 142, 153, 324, 422, 517, 651, 693, 858
BssNI	GRCGYC	1 cut(s)	779
BssT1I	CCWWGG	1 cut(s)	782
Bst4CI	ACNGT	2 cut(s)	20, 56
Bst6I	CTCTTC	1 cut(s)	629
BstACI	GRCGYC	1 cut(s)	779
BstAUI	TGTACA	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	4 cut(s)	491, 810, 822, 831
BstF5I	GGATG	3 cut(s)	71, 367, 576
BstH2I	RGCGCY	1 cut(s)	782
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	9 cut(s)	72, 145, 156, 327, 425, 520, 654, 696, 861
BstMAI	GTCTC	3 cut(s)	248, 705, 858
BstMBI	GATC	9 cut(s)	69, 142, 153, 324, 422, 517, 651, 693, 858
BstMCI	CGRYCG	3 cut(s)	133, 156, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstSCI	CCNGG	3 cut(s)	647, 669, 670
BstV1I	GCAGC	2 cut(s)	187, 447
BstV2I	GAAGAC	3 cut(s)	128, 824, 893
BstX2I	RGATCY	4 cut(s)	422, 517, 651, 693
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	4 cut(s)	422, 517, 651, 693
Bsu15I	ATCGAT	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	397
BsuTUI	ATCGAT	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	71, 367, 576
Cac8I	GCNNGC	1 cut(s)	488
CfoI	GCGC	1 cut(s)	781
Cfr10I	RCCGGY	1 cut(s)	212
Cfr9I	CCCGGG	1 cut(s)	670
ClaI	ATCGAT	1 cut(s)	152
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	264, 706
CspAI	ACCGGT	1 cut(s)	212
CviQI	GTAC	2 cut(s)	264, 706
DdeI	CTNAG	4 cut(s)	491, 810, 822, 831
DinI	GGCGCC	1 cut(s)	780
DpnI	GATC	9 cut(s)	71, 144, 155, 326, 424, 519, 653, 695, 860
DpnII	GATC	9 cut(s)	69, 142, 153, 324, 422, 517, 651, 693, 858
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	782
Eco24I	GRGCYC	1 cut(s)	879
Eco32I	GATATC	1 cut(s)	618
Eco72I	CACGTG	1 cut(s)	190
Eco88I	CYCGRG	4 cut(s)	374, 529, 670, 724
EcoRV	GATATC	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	782
EcoT38I	GRGCYC	1 cut(s)	879
EgeI	GGCGCC	1 cut(s)	780
EheI	GGCGCC	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	782
Esp3I	CGTCTC	1 cut(s)	248
FaiI	YATR	6 cut(s)	347, 357, 449, 474, 484, 561
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FbaI	TGATCA	2 cut(s)	324, 858
Fnu4HI	GCNGC	2 cut(s)	201, 461
FokI	GGATG	3 cut(s)	78, 354, 563
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	2 cut(s)	201, 461
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	780
GluI	GCNGC	2 cut(s)	201, 461
GsuI	CTGGAG	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	782
HapII	CCGG	7 cut(s)	63, 129, 213, 276, 420, 648, 671
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	781
Hin1I	GRCGYC	1 cut(s)	779
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	8 cut(s)	108, 170, 207, 239, 259, 359, 390, 851
HpaII	CCGG	7 cut(s)	63, 129, 213, 276, 420, 648, 671
HphI	GGTGA	2 cut(s)	202, 409
Hpy166II	GTNNAC	3 cut(s)	80, 89, 574
Hpy188I	TCNGA	3 cut(s)	324, 517, 858
Hpy188III	TCNNGA	4 cut(s)	140, 466, 544, 613
Hpy8I	GTNNAC	3 cut(s)	80, 89, 574
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4III	ACNGT	2 cut(s)	20, 56
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	8, 303, 486, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	4 cut(s)	491, 810, 822, 831
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	779
HspAI	GCGC	1 cut(s)	779
KasI	GGCGCC	1 cut(s)	778
Ksp22I	TGATCA	2 cut(s)	324, 858
Kzo9I	GATC	9 cut(s)	69, 142, 153, 324, 422, 517, 651, 693, 858
LmnI	GCTCC	2 cut(s)	131, 457
LpnPI	CCDG	9 cut(s)	76, 142, 189, 226, 289, 433, 661, 684, 843
Lsp1109I	GCAGC	2 cut(s)	187, 447
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	208, 788
MalI	GATC	9 cut(s)	71, 144, 155, 326, 424, 519, 653, 695, 860
MboI	GATC	9 cut(s)	69, 142, 153, 324, 422, 517, 651, 693, 858
MboII	GAAGA	6 cut(s)	128, 559, 646, 751, 829, 898
MflI	RGATCY	4 cut(s)	422, 517, 651, 693
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	3 cut(s)	328, 412, 658
Mly113I	GGCGCC	1 cut(s)	779
MlyI	GAGTC	2 cut(s)	216, 860
MnlI	CCTC	7 cut(s)	381, 391, 394, 448, 608, 630, 748
MroXI	GAANNNNTTC	1 cut(s)	743
MseI	TTAA	3 cut(s)	39, 644, 897
MspI	CCGG	7 cut(s)	63, 129, 213, 276, 420, 648, 671
MspR9I	CCNGG	3 cut(s)	649, 671, 672
Mva1269I	GAATGC	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	496
NarI	GGCGCC	1 cut(s)	779
NciI	CCSGG	3 cut(s)	649, 671, 672
NdeII	GATC	9 cut(s)	69, 142, 153, 324, 422, 517, 651, 693, 858
NlaIV	GGNNCC	3 cut(s)	127, 280, 780
NmuCI	GTSAC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	6 cut(s)	108, 170, 239, 259, 359, 390
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	202, 462
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	2 cut(s)	215, 859
PluTI	GGCGCC	1 cut(s)	782
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
PpsI	GAGTC	2 cut(s)	215, 859
Ppu21I	YACGTR	1 cut(s)	190
PspCI	CACGTG	1 cut(s)	190
PspN4I	GGNNCC	3 cut(s)	127, 280, 780
PsuI	RGATCY	4 cut(s)	422, 517, 651, 693
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	265, 707
RsaNI	GTAC	2 cut(s)	264, 706
SaqAI	TTAA	3 cut(s)	39, 644, 897
SatI	GCNGC	2 cut(s)	201, 461
Sau3AI	GATC	9 cut(s)	69, 142, 153, 324, 422, 517, 651, 693, 858
SchI	GAGTC	2 cut(s)	216, 860
ScrFI	CCNGG	3 cut(s)	649, 671, 672
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	1 cut(s)	793
SfoI	GGCGCC	1 cut(s)	780
SmaI	CCCGGG	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	102, 464
SmoI	CTYRAG	2 cut(s)	102, 464
Sse9I	AATT	3 cut(s)	328, 412, 658
SspDI	GGCGCC	1 cut(s)	778
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	3 cut(s)	647, 669, 670
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	2 cut(s)	20, 56
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	152, 168, 587, 600, 624
TasI	AATT	3 cut(s)	328, 412, 658
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	6 cut(s)	108, 170, 239, 259, 359, 390
Tru1I	TTAA	3 cut(s)	39, 644, 897
Tru9I	TTAA	3 cut(s)	39, 644, 897
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	200, 460
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	4 cut(s)	12, 489, 501, 529
TspGWI	ACGGA	1 cut(s)	163
TspMI	CCCGGG	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmaI	CCCGGG	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	743
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.