Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014012

Physical Location & Seq

Genomic Coordinates Reverse (-)

30085435 .. 30085761

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38001.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGACTATCTTGGATGAGCTTCTACCGATTTCGGTTGAGATGGCCAAGAGGAACTTGAAGGGTATTTGGAACTTCACAAACCCTGGTGTCGTGAGTCACAATGAGATCCTGGAGATGTACAAGAAGTACATTGACCCCAGTTTCAAGTGGGTTAATTTTACATTGGAAGAACAAGCCAAGGTTATTGTGGCACCAAGAAGTAACAATGAGATGGATGCATCTAAGCTGAAGAAAGAGTTCCCTGAACTATTGTCAATCAAGGAGTCGCTGATTAAATACGTCTTTGAGCCCAACAAGAAAACATCTGCTGGTGGAGCAGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010646 GO:0010817 GO:0010928 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

109

Amino Acids

12.32

Weight (kDa)

7.9

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63000
fragaria_vesca	FvH4_5g01300 FvH4_6g38001
malus_domestica	MD04G1069500.v1.1 MD06G1070600.v1.1
prunus_persica	Prupe.5G088400_v2.0.a1
pyrus_communis	pycom06g06970
rosa_chinensis	RchiOBHm_Chr7g0199641
rosa_laevigata	RLG00000003780
rosa_multiflora	Rmu_sc0009191.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256530
rosa_rugosa	Rorug07G0055500
rosa_samantha	Rh7AG180500 Rh7BG183500 Rh7CG190200 Rh7DG183400
rosa_wichuraiana	Rw7G015860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	2 cut(s)	119, 128
AgsI	TTSAA	2 cut(s)	58, 145
AjnI	CCWGG	2 cut(s)	82, 108
AluBI	AGCT	2 cut(s)	19, 226
AluI	AGCT	2 cut(s)	19, 226
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	291
BccI	CCATC	2 cut(s)	34, 205
BciT130I	CCWGG	2 cut(s)	84, 110
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	84, 110
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	2 cut(s)	84, 110
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	205, 227
BmuI	ACTGGG	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	82, 177
Bse1I	ACTGG	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	84, 110
BseDI	CCNNGG	2 cut(s)	82, 177
BseGI	GGATG	2 cut(s)	19, 220
BseNI	ACTGG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	190
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	2 cut(s)	82, 177
BssMI	GATC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	84, 110
BstAUI	TGTACA	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	19, 220
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	2 cut(s)	84, 110
BstSCI	CCNGG	2 cut(s)	82, 108
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	19, 220
Csp6I	GTAC	2 cut(s)	118, 127
CviJI	RGCY	5 cut(s)	19, 44, 176, 226, 289
CviKI_1	RGCY	5 cut(s)	19, 44, 176, 226, 289
CviQI	GTAC	2 cut(s)	118, 127
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	82, 108
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	177
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	2 cut(s)	26, 227
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	44
HinfI	GANTC	2 cut(s)	94, 263
Hpy188III	TCNNGA	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	7 cut(s)	69, 95, 96, 122, 151, 255, 294
LweI	GCATC	2 cut(s)	205, 227
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	95, 200
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	2 cut(s)	179, 241
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	291
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	2 cut(s)	154, 322
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	103, 272
MnlI	CCTC	1 cut(s)	42
Mox20I	TGGCCA	1 cut(s)	44
Mph1103I	ATGCAT	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	3 cut(s)	153, 273, 325
Msp20I	TGGCCA	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	84, 110
MvaI	CCWGG	2 cut(s)	84, 110
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	2 cut(s)	102, 271
PpsI	GAGTC	2 cut(s)	102, 271
Psp6I	CCWGG	2 cut(s)	82, 108
PspGI	CCWGG	2 cut(s)	82, 108
PspN4I	GGNNCC	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	2 cut(s)	119, 128
RsaNI	GTAC	2 cut(s)	118, 127
SaqAI	TTAA	3 cut(s)	153, 273, 325
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	105
SchI	GAGTC	2 cut(s)	103, 272
ScrFI	CCNGG	2 cut(s)	84, 110
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	4 cut(s)	21, 183, 228, 282
SfaNI	GCATC	2 cut(s)	205, 227
Sse9I	AATT	2 cut(s)	154, 322
StyD4I	CCNGG	2 cut(s)	82, 108
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	282
TasI	AATT	2 cut(s)	154, 322
TatI	WGTACW	2 cut(s)	117, 126
Tru1I	TTAA	3 cut(s)	153, 273, 325
Tru9I	TTAA	3 cut(s)	153, 273, 325
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	236
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.