Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014012

Physical Location & Seq

Genomic Coordinates Forward (+)

9936824 .. 9938634

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G088400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGTTTTCCATCCAACGGCGCCGAGAAGCCGCTCAAGTTTCTGATCTACGGCAGGACGGGCTGGATAGGCGGCCTTCTCGGCAAGCTCTGCGAGGCCCAATCCATAGCCTACGAGTACGGCTCCGGCCGCCTCGAGAGCCGCGCCTCGCTCGAGGCCGACATCGCCGCCATCAAGCCGACCCACGTCTTCAACGCCGCCGGCGTCACCGGCCGCCCCAACGTCGACTGGTGCGAATCCCATAAGGTCGAGACCATCCGCACCAACGTGGTAGGCACCTTGACCCTTGCTGACGTTTGCAGGGAGCGCGGGCTGGTCCTCGTAAACTACGCGACGGGTTGCATTTTCGAGTACGATGCGGGTCATCAGCTCGGGTCGGGCGTCGGGTTTAAGGAGGAGGACACGCCCAACTTTATCGGATCTTTCTACTCCAAGACCAAGGCCATGGTGGAAGATCTGCTCAACAATTTCGAGAATGTGTGTACTTTGCGTGTTAGAATGCCGATTTCATCTGATTTATCCAACCCGCGTAACTTCATCACAAAGATCACTCGATATGAGAAAGTAGTAGACATTCCAAACTCCATGACGATCTTGGATGAACTCCTCCCCATTTCGATTGAGATGGCGAAGAGAAACCTCACCGGAATCTATAACTTCACAAACCCTGGAGTGGTCAGCCACAATGAGATCTTGGAGATGTATAAGGAATACATTGATCCCAGCTTCACATGGAAGAACTTTACTCTTGAGGAGCAGGCAAAGGTGATTGTTGCTCCCAGGAGCAACAATGAGCTGGATGCCACTAAATTGAAGCAAGAATTCCCTGAACTCTTATCCATCAAGGAATCTCTCATCAAGAATGTGTTCAAGCCAAATCAGAAGACTGCCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010646 GO:0010817 GO:0010928 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 ko00523 ko01130 map00520 map00523 map01130

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

300

Amino Acids

33.37

Weight (kDa)

6.16

Isoelectric Point (pI)

23.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63000
fragaria_vesca	FvH4_5g01300 FvH4_6g38001
malus_domestica	MD04G1069500.v1.1 MD06G1070600.v1.1
prunus_persica	Prupe.5G088400_v2.0.a1
pyrus_communis	pycom06g06970
rosa_chinensis	RchiOBHm_Chr7g0199641
rosa_laevigata	RLG00000003780
rosa_multiflora	Rmu_sc0009191.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256530
rosa_rugosa	Rorug07G0055500
rosa_samantha	Rh7AG180500 Rh7BG183500 Rh7CG190200 Rh7DG183400
rosa_wichuraiana	Rw7G015860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	20, 275
AccBSI	CCGCTC	1 cut(s)	34
AccI	GTMKAC	2 cut(s)	225, 570
AccII	CGCG	4 cut(s)	144, 309, 332, 529
AclWI	GGATC	2 cut(s)	427, 713
AcoI	YGGCCR	2 cut(s)	127, 211
AcsI	RAATTY	1 cut(s)	821
AcyI	GRCGYC	3 cut(s)	21, 204, 381
AfaI	GTAC	3 cut(s)	119, 353, 484
AfiI	CCNNNNNNNGG	2 cut(s)	17, 673
AgsI	TTSAA	3 cut(s)	193, 814, 871
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	2 cut(s)	667, 779
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	5 cut(s)	88, 370, 726, 796, 896
AluI	AGCT	5 cut(s)	88, 370, 726, 796, 896
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	427, 713
Ama87I	CYCGRG	3 cut(s)	134, 152, 371
AoxI	GGCC	6 cut(s)	73, 96, 127, 156, 211, 441
ApoI	RAATTY	1 cut(s)	821
Asp700I	GAANNNNTTC	1 cut(s)	866
AspLEI	GCGC	3 cut(s)	23, 146, 309
AspS9I	GGNCC	2 cut(s)	97, 316
AsuHPI	GGTGA	3 cut(s)	199, 634, 778
AvaI	CYCGRG	3 cut(s)	134, 152, 371
AvaII	GGWCC	1 cut(s)	316
BanI	GGYRCC	2 cut(s)	20, 275
BbsI	GAAGAC	2 cut(s)	181, 890
BccI	CCATC	5 cut(s)	19, 179, 263, 619, 848
BceAI	ACGGC	3 cut(s)	34, 67, 136
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	2 cut(s)	669, 781
BcoDI	GTCTC	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	24
BglI	GCCNNNNNGGC	1 cut(s)	81
BglII	AGATCT	2 cut(s)	454, 690
BisI	GCNGC	7 cut(s)	32, 73, 130, 142, 168, 198, 214
BlsI	GCNGC	7 cut(s)	33, 74, 131, 143, 169, 199, 215
Bme1390I	CCNGG	2 cut(s)	669, 781
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	3 cut(s)	134, 152, 371
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	97, 316
BmiI	GGNNCC	3 cut(s)	22, 124, 277
BmrFI	CCNGG	2 cut(s)	669, 781
BmsI	GCATC	2 cut(s)	346, 790
BoxI	GACNNNNGTC	1 cut(s)	185
BpiI	GAAGAC	2 cut(s)	181, 890
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	20, 770
BsaHI	GRCGYC	3 cut(s)	21, 204, 381
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	4 cut(s)	438, 444, 667, 779
BsaWI	WCCGGW	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 673
Bse118I	RCCGGY	2 cut(s)	200, 209
Bse1I	ACTGG	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	669, 781
BseDI	CCNNGG	4 cut(s)	438, 444, 667, 779
BseGI	GGATG	4 cut(s)	11, 255, 604, 805
BseLI	CCNNNNNNNGG	2 cut(s)	17, 673
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	3 cut(s)	410, 596, 767
BseX3I	CGGCCG	2 cut(s)	127, 211
BseYI	CCCAGC	1 cut(s)	722
Bsh1236I	CGCG	4 cut(s)	144, 309, 332, 529
Bsh1285I	CGRYCG	2 cut(s)	130, 214
BshFI	GGCC	6 cut(s)	75, 98, 129, 158, 213, 443
BshNI	GGYRCC	2 cut(s)	20, 275
BsiEI	CGRYCG	2 cut(s)	130, 214
BsiHKCI	CYCGRG	3 cut(s)	134, 152, 371
BsiSI	CCGG	4 cut(s)	126, 201, 210, 645
BslI	CCNNNNNNNGG	2 cut(s)	17, 673
BsmAI	GTCTC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	6 cut(s)	75, 98, 129, 158, 213, 443
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	3 cut(s)	134, 152, 371
Bsp143I	GATC	7 cut(s)	45, 419, 454, 546, 591, 690, 718
Bsp19I	CCATGG	1 cut(s)	444
BspANI	GGCC	6 cut(s)	75, 98, 129, 158, 213, 443
BspFNI	CGCG	4 cut(s)	144, 309, 332, 529
BspLI	GGNNCC	3 cut(s)	22, 124, 277
BspPI	GGATC	2 cut(s)	427, 713
BspT107I	GGYRCC	2 cut(s)	20, 275
BspTNI	GGTCTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	34
BsrFI	RCCGGY	2 cut(s)	200, 209
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	2 cut(s)	200, 209
BssECI	CCNNGG	4 cut(s)	438, 444, 667, 779
BssMI	GATC	7 cut(s)	45, 419, 454, 546, 591, 690, 718
BssNI	GRCGYC	3 cut(s)	21, 204, 381
BssT1I	CCWWGG	2 cut(s)	438, 444
Bst2UI	CCWGG	2 cut(s)	669, 781
Bst6I	CTCTTC	1 cut(s)	626
BstACI	GRCGYC	3 cut(s)	21, 204, 381
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstC8I	GCNNGC	4 cut(s)	86, 202, 311, 759
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	4 cut(s)	11, 255, 604, 805
BstFNI	CGCG	4 cut(s)	144, 309, 332, 529
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	3 cut(s)	23, 146, 309
BstKTI	GATC	7 cut(s)	48, 422, 457, 549, 594, 693, 721
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	7 cut(s)	45, 419, 454, 546, 591, 690, 718
BstMCI	CGRYCG	2 cut(s)	130, 214
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 69, 81, 90, 129, 138, 164, 210, 306
BstNI	CCWGG	2 cut(s)	669, 781
BstPAI	GACNNNNGTC	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	667, 779
BstUI	CGCG	4 cut(s)	144, 309, 332, 529
BstV2I	GAAGAC	2 cut(s)	181, 890
BstX2I	RGATCY	3 cut(s)	419, 454, 690
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	3 cut(s)	419, 454, 690
BstZI	CGGCCG	2 cut(s)	127, 211
BsuRI	GGCC	6 cut(s)	75, 98, 129, 158, 213, 443
BtgI	CCRYGG	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	148
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	4 cut(s)	11, 255, 604, 805
Cac8I	GCNNGC	4 cut(s)	86, 202, 311, 759
CfoI	GCGC	3 cut(s)	23, 146, 309
Cfr10I	RCCGGY	2 cut(s)	200, 209
Cfr13I	GGNCC	2 cut(s)	97, 316
CseI	GACGC	2 cut(s)	193, 370
Csp6I	GTAC	3 cut(s)	118, 352, 483
CviAII	CATG	3 cut(s)	445, 586, 732
CviQI	GTAC	3 cut(s)	118, 352, 483
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	7 cut(s)	47, 421, 456, 548, 593, 692, 720
DpnII	GATC	7 cut(s)	45, 419, 454, 546, 591, 690, 718
EaeI	YGGCCR	2 cut(s)	127, 211
EagI	CGGCCG	2 cut(s)	127, 211
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
EclXI	CGGCCG	2 cut(s)	127, 211
Eco130I	CCWWGG	2 cut(s)	438, 444
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	316
Eco52I	CGGCCG	2 cut(s)	127, 211
Eco88I	CYCGRG	3 cut(s)	134, 152, 371
EcoRI	GAATTC	1 cut(s)	821
EcoRII	CCWGG	2 cut(s)	667, 779
EcoT14I	CCWWGG	2 cut(s)	438, 444
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	438, 444
FaeI	CATG	3 cut(s)	448, 589, 735
FaiI	YATR	8 cut(s)	107, 243, 446, 558, 587, 654, 705, 733
FatI	CATG	3 cut(s)	444, 585, 731
FauI	CCCGC	3 cut(s)	302, 352, 534
FblI	GTMKAC	2 cut(s)	225, 570
Fnu4HI	GCNGC	7 cut(s)	32, 73, 130, 142, 168, 198, 214
FokI	GGATG	3 cut(s)	242, 611, 812
Fsp4HI	GCNGC	7 cut(s)	32, 73, 130, 142, 168, 198, 214
GlaI	GCGC	3 cut(s)	22, 145, 308
GluI	GCNGC	7 cut(s)	32, 73, 130, 142, 168, 198, 214
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	1 cut(s)	690
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	6 cut(s)	75, 98, 129, 158, 213, 443
HapII	CCGG	4 cut(s)	126, 201, 210, 645
HgaI	GACGC	2 cut(s)	193, 370
HhaI	GCGC	3 cut(s)	23, 146, 309
Hin1I	GRCGYC	3 cut(s)	21, 204, 381
Hin1II	CATG	3 cut(s)	448, 589, 735
Hin6I	GCGC	3 cut(s)	21, 144, 307
HinP1I	GCGC	3 cut(s)	21, 144, 307
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	894
HinfI	GANTC	3 cut(s)	236, 648, 848
HpaII	CCGG	4 cut(s)	126, 201, 210, 645
HphI	GGTGA	3 cut(s)	199, 634, 778
Hpy166II	GTNNAC	4 cut(s)	226, 325, 483, 571
Hpy188I	TCNGA	4 cut(s)	45, 419, 514, 882
Hpy188III	TCNNGA	5 cut(s)	136, 250, 472, 749, 859
Hpy8I	GTNNAC	4 cut(s)	226, 325, 483, 571
Hpy99I	CGWCG	3 cut(s)	227, 337, 386
HpyAV	CCTTC	1 cut(s)	86
HpyCH4IV	ACGT	4 cut(s)	186, 222, 267, 294
HpyCH4V	TGCA	2 cut(s)	300, 342
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 69, 81, 90, 129, 138, 164, 210, 306
HpySE526I	ACGT	4 cut(s)	186, 222, 267, 294
Hsp92I	GRCGYC	3 cut(s)	21, 204, 381
Hsp92II	CATG	3 cut(s)	448, 589, 735
HspAI	GCGC	3 cut(s)	21, 144, 307
KasI	GGCGCC	1 cut(s)	20
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	7 cut(s)	45, 419, 454, 546, 591, 690, 718
LmnI	GCTCC	5 cut(s)	128, 304, 754, 781, 783
LweI	GCATC	2 cut(s)	346, 790
MaeII	ACGT	4 cut(s)	186, 222, 267, 294
MaeIII	GTNAC	2 cut(s)	205, 530
MalI	GATC	7 cut(s)	47, 421, 456, 548, 593, 692, 720
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	7 cut(s)	45, 419, 454, 546, 591, 690, 718
MboII	GAAGA	5 cut(s)	181, 464, 643, 748, 895
MflI	RGATCY	3 cut(s)	419, 454, 690
MluCI	AATT	3 cut(s)	466, 809, 821
Mly113I	GGCGCC	1 cut(s)	21
MmeI	TCCRAC	2 cut(s)	39, 546
MreI	CGCCGGCG	1 cut(s)	200
MroNI	GCCGGC	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	866
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	4 cut(s)	126, 201, 210, 645
MspR9I	CCNGG	2 cut(s)	669, 781
Mva1269I	GAATGC	1 cut(s)	504
MvaI	CCWGG	2 cut(s)	669, 781
MvnI	CGCG	4 cut(s)	144, 309, 332, 529
MwoI	GCNNNNNNNGC	9 cut(s)	60, 69, 81, 90, 129, 138, 164, 210, 306
NaeI	GCCGGC	1 cut(s)	202
NarI	GGCGCC	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	7 cut(s)	45, 419, 454, 546, 591, 690, 718
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	448, 589, 735
NlaIV	GGNNCC	3 cut(s)	22, 124, 277
NmeAIII	GCCGAG	2 cut(s)	49, 60
NmuCI	GTSAC	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	266
PaeR7I	CTCGAG	2 cut(s)	134, 152
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 231, 378
PctI	GAATGC	1 cut(s)	504
PdiI	GCCGGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	3 cut(s)	236, 648, 848
PkrI	GCNGC	7 cut(s)	33, 74, 131, 143, 169, 199, 215
PluTI	GGCGCC	1 cut(s)	24
PshAI	GACNNNNGTC	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	667, 779
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	667, 779
PspN4I	GGNNCC	3 cut(s)	22, 124, 277
PspPI	GGNCC	2 cut(s)	97, 316
PspXI	VCTCGAGB	1 cut(s)	152
PsuI	RGATCY	3 cut(s)	419, 454, 690
RsaI	GTAC	3 cut(s)	119, 353, 484
RsaNI	GTAC	3 cut(s)	118, 352, 483
RseI	CAYNNNNRTG	1 cut(s)	266
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	7 cut(s)	32, 73, 130, 142, 168, 198, 214
Sau3AI	GATC	7 cut(s)	45, 419, 454, 546, 591, 690, 718
Sau96I	GGNCC	2 cut(s)	97, 316
ScrFI	CCNGG	2 cut(s)	669, 781
SfaNI	GCATC	2 cut(s)	346, 790
SfoI	GGCGCC	1 cut(s)	22
Sfr274I	CTCGAG	2 cut(s)	134, 152
SgrAI	CRCCGGYG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	316
SlaI	CTCGAG	2 cut(s)	134, 152
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	4 cut(s)	35, 134, 152, 749
SmoI	CTYRAG	4 cut(s)	35, 134, 152, 749
Sse9I	AATT	3 cut(s)	466, 809, 821
SspDI	GGCGCC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	667, 779
StyI	CCWWGG	2 cut(s)	438, 444
TaiI	ACGT	4 cut(s)	189, 225, 270, 297
TaqI	TCGA	8 cut(s)	135, 153, 225, 249, 348, 471, 553, 617
TasI	AATT	3 cut(s)	466, 809, 821
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	7 cut(s)	34, 75, 132, 144, 170, 200, 216
TfiI	GAWTC	3 cut(s)	236, 648, 848
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	498, 526, 615
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	821
XcmI	CCANNNNNNNNNTGG	2 cut(s)	445, 592
XhoI	CTCGAG	2 cut(s)	134, 152
XmiI	GTMKAC	2 cut(s)	225, 570
XmnI	GAANNNNTTC	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.