Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014012

Physical Location & Seq

Genomic Coordinates Reverse (-)

17081358 .. 17083291

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1070600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGATTCCCATCCAACGGCGCCGAGAAGCCGCTCAAGTTTCTGATCTACGGCCGCACGGGCTGGATTGGCGGCCTCCTCGGCAAGCTCTGCGAGGGCCAATCAATCGACTACGTCTACGGCTCCGGCCGCCTCGAGAACCGCAGCTCGCTCGAGGCCGACATCACCAATATTAAGCCCACCCACATCTTCAACGCCGCTGGCGTCACCGGCCGCCCCAACGTCGACTGGTGCGAATCCCATAAGGTCGAGACCATCAGGACCAACGTGGTCGGCACCTTGACCCTTGCTGATGTCTGTAGGGAGCGCGGCCTGATCCTCATTAACTATGCGACCGGGTGCATTTTCGAGTACGATGCGGGTCACCCGCTCGGGTCGGGCGTTGGGTTCAAGGAGGAGGACACCCCCAACTTTATCGGATCTTTCTATTCCAAGACCAAGGCCATGGTGGAAGATCTGCTCAACAATTTCGAGAACGTTTGTACTTTGCGTGTTAGAATGCCAATTTCATCCGACTTATGCAACCCCCGTAACTTCATCACGAAAATCACTCGATATGATAAGGTAGTTGACATTCCCAACTCCATGACGATCTTGGACGAACTCCTCCCCATTTCCATTGAGATGGCAAAGAGGAACCTCACCGGAACCTACAACTTTACAAACCCCGGAGTGGTCAGCCACAACGAGATCTTGGAGATGTACAAGGAATACATTGACCCCAGCTTCTCTTACAAGAACTTTACTCTTGAGGAGCAGGCAAAGGTGATTGTTGCTCCTAGGAGCAACAATGAACTTGACGCCTCGAAATTGAAGAAAGAATTCCCTGAACTCTTGTCGATCAAGGAATCTCTCATTAAAAACGTCTTCAAGCCAAACCAGAAGACCGCCACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010646 GO:0010817 GO:0010928 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 ko00523 ko01130 map00520 map00523 map01130

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

300

Amino Acids

33.41

Weight (kDa)

6.16

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	13 - 185	8.1e-14	RmlD substrate binding domain
Epimerase	PF01370	15 - 178	3.8e-11	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63000
fragaria_vesca	FvH4_5g01300 FvH4_6g38001
malus_domestica	MD04G1069500.v1.1 MD06G1070600.v1.1
prunus_persica	Prupe.5G088400_v2.0.a1
pyrus_communis	pycom06g06970
rosa_chinensis	RchiOBHm_Chr7g0199641
rosa_laevigata	RLG00000003780
rosa_multiflora	Rmu_sc0009191.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256530
rosa_rugosa	Rorug07G0055500
rosa_samantha	Rh7AG180500 Rh7BG183500 Rh7CG190200 Rh7DG183400
rosa_wichuraiana	Rw7G015860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	20, 275
AccBSI	CCGCTC	2 cut(s)	34, 370
AccI	GTMKAC	2 cut(s)	117, 225
AccII	CGCG	1 cut(s)	309
AclI	AACGTT	1 cut(s)	477
AclWI	GGATC	2 cut(s)	310, 427
AcoI	YGGCCR	3 cut(s)	52, 127, 211
AcsI	RAATTY	1 cut(s)	821
AcyI	GRCGYC	3 cut(s)	21, 204, 801
AfaI	GTAC	3 cut(s)	353, 484, 704
AfiI	CCNNNNNNNGG	2 cut(s)	17, 673
AgsI	TTSAA	4 cut(s)	193, 391, 814, 871
AluBI	AGCT	4 cut(s)	88, 147, 726, 896
AluI	AGCT	4 cut(s)	88, 147, 726, 896
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	310, 427
Ama87I	CYCGRG	3 cut(s)	134, 152, 371
AoxI	GGCC	8 cut(s)	52, 73, 97, 127, 156, 211, 310, 441
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	821
Asp700I	GAANNNNTTC	1 cut(s)	821
AspA2I	CCTAGG	1 cut(s)	779
AspLEI	GCGC	2 cut(s)	23, 309
AspS9I	GGNCC	2 cut(s)	97, 261
AsuC2I	CCSGG	2 cut(s)	337, 669
AsuHPI	GGTGA	5 cut(s)	157, 199, 356, 634, 778
AvaI	CYCGRG	3 cut(s)	134, 152, 371
AvaII	GGWCC	1 cut(s)	261
AvrII	CCTAGG	1 cut(s)	779
BanI	GGYRCC	2 cut(s)	20, 275
BbsI	GAAGAC	2 cut(s)	859, 890
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	3 cut(s)	19, 263, 619
BceAI	ACGGC	3 cut(s)	34, 67, 136
BcgI	CGANNNNNNTGC	4 cut(s)	133, 167, 338, 372
BcnI	CCSGG	2 cut(s)	337, 669
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	780
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	24
BglI	GCCNNNNNGGC	2 cut(s)	60, 81
BglII	AGATCT	2 cut(s)	454, 690
BisI	GCNGC	8 cut(s)	32, 55, 73, 130, 145, 198, 214, 310
BlnI	CCTAGG	1 cut(s)	779
BlsI	GCNGC	8 cut(s)	33, 56, 74, 131, 146, 199, 215, 311
Bme1390I	CCNGG	2 cut(s)	337, 669
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	3 cut(s)	134, 152, 371
BmgT120I	GGNCC	2 cut(s)	97, 261
BmiI	GGNNCC	5 cut(s)	22, 124, 277, 638, 649
BmrFI	CCNGG	2 cut(s)	337, 669
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	2 cut(s)	859, 890
BpuEI	CTTGAG	2 cut(s)	20, 770
BpuMI	CCSGG	2 cut(s)	337, 669
BsaBI	GATNNNNATC	1 cut(s)	10
BsaHI	GRCGYC	3 cut(s)	21, 204, 801
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	5 cut(s)	79, 438, 444, 667, 779
BsaWI	WCCGGW	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 673
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	10
BseDI	CCNNGG	5 cut(s)	79, 438, 444, 667, 779
BseGI	GGATG	2 cut(s)	11, 509
BseJI	GATNNNNATC	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	17, 673
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	4 cut(s)	68, 410, 596, 767
BseX3I	CGGCCG	3 cut(s)	52, 127, 211
BseXI	GCAGC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	722
Bsh1236I	CGCG	1 cut(s)	309
Bsh1285I	CGRYCG	4 cut(s)	55, 130, 214, 336
BshFI	GGCC	8 cut(s)	54, 75, 99, 129, 158, 213, 312, 443
BshNI	GGYRCC	2 cut(s)	20, 275
BsiEI	CGRYCG	4 cut(s)	55, 130, 214, 336
BsiHKCI	CYCGRG	3 cut(s)	134, 152, 371
BsiSI	CCGG	5 cut(s)	126, 210, 336, 645, 669
BslI	CCNNNNNNNGG	2 cut(s)	17, 673
BsmAI	GTCTC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	8 cut(s)	54, 75, 99, 129, 158, 213, 312, 443
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	3 cut(s)	134, 152, 371
Bsp1407I	TGTACA	1 cut(s)	702
Bsp143I	GATC	7 cut(s)	45, 315, 419, 454, 591, 690, 840
Bsp19I	CCATGG	1 cut(s)	444
BspANI	GGCC	8 cut(s)	54, 75, 99, 129, 158, 213, 312, 443
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	5 cut(s)	22, 124, 277, 638, 649
BspPI	GGATC	2 cut(s)	310, 427
BspT107I	GGYRCC	2 cut(s)	20, 275
BspTNI	GGTCTC	1 cut(s)	245
BsrBI	CCGCTC	2 cut(s)	34, 370
BsrFI	RCCGGY	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	702
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	5 cut(s)	79, 438, 444, 667, 779
BssMI	GATC	7 cut(s)	45, 315, 419, 454, 591, 690, 840
BssNI	GRCGYC	3 cut(s)	21, 204, 801
BssT1I	CCWWGG	3 cut(s)	438, 444, 779
BstACI	GRCGYC	3 cut(s)	21, 204, 801
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	702
BstC8I	GCNNGC	4 cut(s)	86, 149, 202, 759
BstDSI	CCRYGG	1 cut(s)	444
BstEII	GGTNACC	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	11, 509
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 309
BstKTI	GATC	7 cut(s)	48, 318, 422, 457, 594, 693, 843
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	7 cut(s)	45, 315, 419, 454, 591, 690, 840
BstMCI	CGRYCG	4 cut(s)	55, 130, 214, 336
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 69, 81, 90, 129, 210
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	335, 667
BstSFI	CTRYAG	1 cut(s)	298
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	2 cut(s)	859, 890
BstX2I	RGATCY	3 cut(s)	419, 454, 690
BstXI	CCANNNNNNTGG	2 cut(s)	445, 625
BstYI	RGATCY	3 cut(s)	419, 454, 690
BstZI	CGGCCG	3 cut(s)	52, 127, 211
BsuRI	GGCC	8 cut(s)	54, 75, 99, 129, 158, 213, 312, 443
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	11, 509
Cac8I	GCNNGC	4 cut(s)	86, 149, 202, 759
CfoI	GCGC	2 cut(s)	23, 309
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	97, 261
CseI	GACGC	2 cut(s)	193, 809
Csp6I	GTAC	3 cut(s)	352, 483, 703
CviAII	CATG	2 cut(s)	445, 586
CviQI	GTAC	3 cut(s)	352, 483, 703
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	7 cut(s)	47, 317, 421, 456, 593, 692, 842
DpnII	GATC	7 cut(s)	45, 315, 419, 454, 591, 690, 840
EaeI	YGGCCR	3 cut(s)	52, 127, 211
EagI	CGGCCG	3 cut(s)	52, 127, 211
EclXI	CGGCCG	3 cut(s)	52, 127, 211
Eco130I	CCWWGG	3 cut(s)	438, 444, 779
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	261
Eco52I	CGGCCG	3 cut(s)	52, 127, 211
Eco88I	CYCGRG	3 cut(s)	134, 152, 371
Eco91I	GGTNACC	1 cut(s)	362
EcoO65I	GGTNACC	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	821
EcoT14I	CCWWGG	3 cut(s)	438, 444, 779
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	3 cut(s)	438, 444, 779
FaeI	CATG	2 cut(s)	448, 589
FaiI	YATR	6 cut(s)	243, 330, 446, 520, 558, 587
FatI	CATG	2 cut(s)	444, 585
FauI	CCCGC	2 cut(s)	352, 375
FblI	GTMKAC	2 cut(s)	117, 225
Fnu4HI	GCNGC	8 cut(s)	32, 55, 73, 130, 145, 198, 214, 310
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	8 cut(s)	32, 55, 73, 130, 145, 198, 214, 310
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	2 cut(s)	22, 308
GluI	GCNGC	8 cut(s)	32, 55, 73, 130, 145, 198, 214, 310
GsaI	CCCAGC	1 cut(s)	726
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	8 cut(s)	54, 75, 99, 129, 158, 213, 312, 443
HapII	CCGG	5 cut(s)	126, 210, 336, 645, 669
HgaI	GACGC	2 cut(s)	193, 809
HhaI	GCGC	2 cut(s)	23, 309
Hin1I	GRCGYC	3 cut(s)	21, 204, 801
Hin1II	CATG	2 cut(s)	448, 589
Hin6I	GCGC	2 cut(s)	21, 307
HinP1I	GCGC	2 cut(s)	21, 307
HincII	GTYRAC	2 cut(s)	226, 571
HindII	GTYRAC	2 cut(s)	226, 571
HinfI	GANTC	3 cut(s)	6, 236, 848
HpaII	CCGG	5 cut(s)	126, 210, 336, 645, 669
HphI	GGTGA	5 cut(s)	157, 199, 356, 634, 778
Hpy166II	GTNNAC	3 cut(s)	118, 226, 571
Hpy188I	TCNGA	3 cut(s)	45, 419, 514
Hpy188III	TCNNGA	6 cut(s)	136, 250, 259, 472, 541, 749
Hpy8I	GTNNAC	3 cut(s)	118, 226, 571
Hpy99I	CGWCG	1 cut(s)	227
HpyCH4IV	ACGT	5 cut(s)	114, 222, 267, 477, 864
HpyCH4V	TGCA	2 cut(s)	342, 522
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 69, 81, 90, 129, 210
HpySE526I	ACGT	5 cut(s)	114, 222, 267, 477, 864
Hsp92I	GRCGYC	3 cut(s)	21, 204, 801
Hsp92II	CATG	2 cut(s)	448, 589
HspAI	GCGC	2 cut(s)	21, 307
KasI	GGCGCC	1 cut(s)	20
Kzo9I	GATC	7 cut(s)	45, 315, 419, 454, 591, 690, 840
LmnI	GCTCC	5 cut(s)	128, 304, 754, 781, 783
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	5 cut(s)	114, 222, 267, 477, 864
MaeIII	GTNAC	3 cut(s)	205, 362, 530
MalI	GATC	7 cut(s)	47, 317, 421, 456, 593, 692, 842
MbiI	CCGCTC	2 cut(s)	34, 370
MboI	GATC	7 cut(s)	45, 315, 419, 454, 591, 690, 840
MboII	GAAGA	5 cut(s)	181, 464, 826, 859, 895
MflI	RGATCY	3 cut(s)	419, 454, 690
MluCI	AATT	4 cut(s)	466, 504, 809, 821
Mly113I	GGCGCC	1 cut(s)	21
MmeI	TCCRAC	2 cut(s)	39, 537
MroXI	GAANNNNTTC	1 cut(s)	821
MseI	TTAA	4 cut(s)	174, 324, 858, 898
MslI	CAYNNNNRTG	1 cut(s)	623
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	5 cut(s)	126, 210, 336, 645, 669
MspR9I	CCNGG	2 cut(s)	337, 669
Mva1269I	GAATGC	1 cut(s)	504
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	6 cut(s)	60, 69, 81, 90, 129, 210
NarI	GGCGCC	1 cut(s)	21
NciI	CCSGG	2 cut(s)	337, 669
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	7 cut(s)	45, 315, 419, 454, 591, 690, 840
NlaIII	CATG	2 cut(s)	448, 589
NlaIV	GGNNCC	5 cut(s)	22, 124, 277, 638, 649
NmeAIII	GCCGAG	2 cut(s)	49, 60
NmuCI	GTSAC	2 cut(s)	205, 362
PaeR7I	CTCGAG	2 cut(s)	134, 152
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 231, 378
PctI	GAATGC	1 cut(s)	504
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	3 cut(s)	6, 236, 848
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	8 cut(s)	33, 56, 74, 131, 146, 199, 215, 311
PluTI	GGCGCC	1 cut(s)	24
Psp1406I	AACGTT	1 cut(s)	477
PspEI	GGTNACC	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	722
PspN4I	GGNNCC	5 cut(s)	22, 124, 277, 638, 649
PspPI	GGNCC	2 cut(s)	97, 261
PspXI	VCTCGAGB	1 cut(s)	152
PsuI	RGATCY	3 cut(s)	419, 454, 690
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	3 cut(s)	353, 484, 704
RsaNI	GTAC	3 cut(s)	352, 483, 703
RseI	CAYNNNNRTG	1 cut(s)	623
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	174, 324, 858, 898
SatI	GCNGC	8 cut(s)	32, 55, 73, 130, 145, 198, 214, 310
Sau3AI	GATC	7 cut(s)	45, 315, 419, 454, 591, 690, 840
Sau96I	GGNCC	2 cut(s)	97, 261
ScrFI	CCNGG	2 cut(s)	337, 669
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	298
SfoI	GGCGCC	1 cut(s)	22
Sfr274I	CTCGAG	2 cut(s)	134, 152
SinI	GGWCC	1 cut(s)	261
SlaI	CTCGAG	2 cut(s)	134, 152
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	4 cut(s)	35, 134, 152, 749
SmoI	CTYRAG	4 cut(s)	35, 134, 152, 749
Sse9I	AATT	4 cut(s)	466, 504, 809, 821
SspDI	GGCGCC	1 cut(s)	20
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	780
StyD4I	CCNGG	2 cut(s)	335, 667
StyI	CCWWGG	3 cut(s)	438, 444, 779
TaiI	ACGT	5 cut(s)	117, 225, 270, 480, 867
TasI	AATT	4 cut(s)	466, 504, 809, 821
TatI	WGTACW	2 cut(s)	482, 702
TauI	GCSGC	7 cut(s)	34, 57, 75, 132, 200, 216, 312
TfiI	GAWTC	3 cut(s)	6, 236, 848
Tru1I	TTAA	4 cut(s)	174, 324, 858, 898
Tru9I	TTAA	4 cut(s)	174, 324, 858, 898
TseFI	GTSAC	2 cut(s)	205, 362
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	2 cut(s)	205, 362
TspDTI	ATGAA	3 cut(s)	498, 526, 807
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	821
XcmI	CCANNNNNNNNNTGG	2 cut(s)	445, 592
XhoI	CTCGAG	2 cut(s)	134, 152
XmaJI	CCTAGG	1 cut(s)	779
XmiI	GTMKAC	2 cut(s)	117, 225
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.