AT1G64405

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
23923517 .. 23924395
879 bp
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UTR
Exon/CDS
Intron
AT1G64405.1

Sequence Viewer

Length: 357 bp
ATGGGCAATTGCATGGAGAGATGGATGCAAGGAGAAGGGGAAGAAGGAAAGATAGAGGTGACAGAAAGAGCAAAAGAGTCCTTCAAACTTGATGGTGATGACAATGAAGATGGTCATGGTGGGATGAAGGTAAAGATCGTGCTTACAAGACATGAATTGGACATGTTTTTGCTTCAGATGAATAGGAGTCATGATGGAAACTTGATGATTACCAAAGACGTTATGGTAGAGCTAGAGAAGAGGATCATAAGAGCTTCGTCATTCTCATCACTATCATCATCACCTTCATCGATAGCATGGGAACCGGCTTTAGAGAGCATCCTGGAGTGTCCAGAAGTCCAGGAAATGGATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.4

Weight (kDa)

4.71

Isoelectric Point (pI)

59.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64405
fragaria_vesca FvH4_5g04610
prunus_persica Prupe.5G120200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194781
rosa_laevigata RLG00000004170
rosa_roxburghii Rroxscaffold_3G00260990
rosa_rugosa Rorug07G0018300
rosa_samantha Rh7AG146000 Rh7BG145900 Rh7CG149900 Rh7DG147300
rosa_wichuraiana Rw7G012460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 346
AclWI GGATC 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 1 cut(s) 85
AjnI CCWGG 2 cut(s) 321, 339
AluBI AGCT 2 cut(s) 232, 254
AluI AGCT 2 cut(s) 232, 254
AlwI GGATC 1 cut(s) 251
AsuHPI GGTGA 3 cut(s) 70, 107, 273
BccI CCATC 4 cut(s) 15, 86, 104, 188
BciT130I CCWGG 2 cut(s) 323, 341
BfaI CTAG 1 cut(s) 233
Bme1390I CCNGG 2 cut(s) 323, 341
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 323, 341
BmsI GCATC 2 cut(s) 15, 327
BpmI CTGGAG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse118I RCCGGY 1 cut(s) 304
BseBI CCWGG 2 cut(s) 323, 341
BseCI ATCGAT 1 cut(s) 290
BseGI GGATG 3 cut(s) 30, 129, 318
BseLI CCNNNNNNNGG 1 cut(s) 346
BshVI ATCGAT 1 cut(s) 290
BsiSI CCGG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 346
Bsp143I GATC 2 cut(s) 135, 243
BspDI ATCGAT 1 cut(s) 290
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 303
BspPI GGATC 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 304
BssMI GATC 2 cut(s) 135, 243
Bst2UI CCWGG 2 cut(s) 323, 341
Bst6I CTCTTC 1 cut(s) 233
BstF5I GGATG 3 cut(s) 30, 129, 318
BstKTI GATC 2 cut(s) 138, 246
BstMBI GATC 2 cut(s) 135, 243
BstNI CCWGG 2 cut(s) 323, 341
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 321, 339
Bsu15I ATCGAT 1 cut(s) 290
BsuTUI ATCGAT 1 cut(s) 290
BtsCI GGATG 3 cut(s) 30, 129, 318
CciI TCATGA 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 304
ClaI ATCGAT 1 cut(s) 290
CviAII CATG 6 cut(s) 13, 116, 152, 163, 191, 297
CviJI RGCY 3 cut(s) 232, 254, 308
CviKI_1 RGCY 3 cut(s) 232, 254, 308
DpnI GATC 2 cut(s) 137, 245
DpnII GATC 2 cut(s) 135, 243
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 321, 339
FaeI CATG 6 cut(s) 16, 119, 155, 166, 194, 300
FaiI YATR 8 cut(s) 14, 117, 153, 164, 192, 224, 248, 298
FatI CATG 6 cut(s) 12, 115, 151, 162, 190, 296
FokI GGATG 3 cut(s) 37, 136, 305
FspBI CTAG 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 344
HapII CCGG 1 cut(s) 305
Hin1II CATG 6 cut(s) 16, 119, 155, 166, 194, 300
HinfI GANTC 2 cut(s) 77, 187
HpaII CCGG 1 cut(s) 305
HphI GGTGA 3 cut(s) 70, 107, 273
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 191, 332
HpyAV CCTTC 5 cut(s) 29, 38, 91, 121, 294
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 12, 28
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 6 cut(s) 16, 119, 155, 166, 194, 300
Kzo9I GATC 2 cut(s) 135, 243
LpnPI CCDG 6 cut(s) 308, 318, 326, 335, 345, 353
LweI GCATC 2 cut(s) 15, 327
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 137, 245
MboI GATC 2 cut(s) 135, 243
MboII GAAGA 3 cut(s) 53, 119, 250
MfeI CAATTG 1 cut(s) 7
MluCI AATT 2 cut(s) 7, 155
MlyI GAGTC 2 cut(s) 86, 196
MnlI CCTC 2 cut(s) 49, 234
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 323, 341
MunI CAATTG 1 cut(s) 7
MvaI CCWGG 2 cut(s) 323, 341
NdeII GATC 2 cut(s) 135, 243
NlaIII CATG 6 cut(s) 16, 119, 155, 166, 194, 300
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 166
PagI TCATGA 1 cut(s) 190
PciI ACATGT 1 cut(s) 162
PflMI CCANNNNNTGG 1 cut(s) 346
PfoI TCCNGGA 2 cut(s) 321, 339
PleI GAGTC 2 cut(s) 85, 195
PpsI GAGTC 2 cut(s) 85, 195
PscI ACATGT 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 321, 339
PspGI CCWGG 2 cut(s) 321, 339
PspN4I GGNNCC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 135, 243
SchI GAGTC 2 cut(s) 86, 196
ScrFI CCNGG 2 cut(s) 323, 341
SetI ASST 6 cut(s) 60, 132, 222, 234, 256, 286
SfaNI GCATC 2 cut(s) 15, 327
Sse9I AATT 2 cut(s) 7, 155
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 321, 339
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 290
TasI AATT 2 cut(s) 7, 155
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 5 cut(s) 120, 140, 168, 194, 276
Van91I CCANNNNNTGG 1 cut(s) 346
XceI RCATGY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.