Prupe.5G120200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
12018892 .. 12020039
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G120200.1

Sequence Viewer

Length: 327 bp
ATGGGAAATTGTGTGGAGACATGCACAGAGAGGCAGCAAGGAGAGGATCAAATGCAGCAGCAAAAGCATGAGCAAGAAGAAAGACAAAATGAAATTAGGTTTGTGAAAGAGAGCAATTTGAGCAAAGATGGCAACGTAAGGGTGAAGATTGTGTTGACCAAGGAAGAGCTAGAGTGGTTGATGCTTCAGCTGAAAGATAGAGGAGGGAAGAGCTTGGAAGATGTTTTGGAGGAGATCCAGAGAAGCAGAGCCAAAGTTGAGGAAGGGTGGAAGCCTTCTTTGGAGAGTATCATGGAGTGCCCTGAAGTAAATGAGATGGATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.75

Weight (kDa)

4.79

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64405
fragaria_vesca FvH4_5g04610
prunus_persica Prupe.5G120200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194781
rosa_laevigata RLG00000004170
rosa_roxburghii Rroxscaffold_3G00260990
rosa_rugosa Rorug07G0018300
rosa_samantha Rh7AG146000 Rh7BG145900 Rh7CG149900 Rh7DG147300
rosa_wichuraiana Rw7G012460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 54, 229
AcuI CTGAAG 2 cut(s) 170, 324
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 3 cut(s) 169, 190, 213
AluI AGCT 3 cut(s) 169, 190, 213
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 54, 229
ApeKI GCWGC 3 cut(s) 34, 55, 58
AsuHPI GGTGA 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 46, 67, 70
BccI CCATC 2 cut(s) 122, 310
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 170
BisI GCNGC 3 cut(s) 35, 56, 59
BlsI GCNGC 3 cut(s) 36, 57, 60
BmsI GCATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 159
BseRI GAGGAG 2 cut(s) 216, 245
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 3 cut(s) 46, 67, 70
BsmAI GTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 46, 234
BspPI GGATC 2 cut(s) 54, 229
BspQI GCTCTTC 2 cut(s) 159, 203
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 46, 234
BssT1I CCWWGG 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 159, 203
BstKTI GATC 2 cut(s) 49, 237
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 2 cut(s) 46, 234
BstMWI GCNNNNNNNGC 3 cut(s) 64, 120, 129
BstNSI RCATGY 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 46, 67, 70
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
CviAII CATG 3 cut(s) 21, 68, 292
CviJI RGCY 5 cut(s) 169, 190, 213, 251, 274
CviKI_1 RGCY 5 cut(s) 169, 190, 213, 251, 274
DpnI GATC 2 cut(s) 48, 236
DpnII GATC 2 cut(s) 46, 234
Eam1104I CTCTTC 2 cut(s) 159, 203
EarI CTCTTC 2 cut(s) 159, 203
Eco130I CCWWGG 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 170, 324
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 24, 71, 295
FaiI YATR 3 cut(s) 22, 69, 293
FatI CATG 3 cut(s) 20, 67, 291
Fnu4HI GCNGC 3 cut(s) 35, 56, 59
Fsp4HI GCNGC 3 cut(s) 35, 56, 59
FspBI CTAG 1 cut(s) 170
GluI GCNGC 3 cut(s) 35, 56, 59
Hin1II CATG 3 cut(s) 24, 71, 295
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 257, 285
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 24, 55
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 120, 129
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 3 cut(s) 24, 71, 295
Kzo9I GATC 2 cut(s) 46, 234
LguI GCTCTTC 2 cut(s) 159, 203
LpnPI CCDG 2 cut(s) 251, 315
Lsp1109I GCAGC 3 cut(s) 46, 67, 70
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 135
MalI GATC 2 cut(s) 48, 236
MboI GATC 2 cut(s) 46, 234
MboII GAAGA 5 cut(s) 89, 157, 176, 220, 230
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 3 cut(s) 7, 93, 115
MnlI CCTC 6 cut(s) 24, 37, 194, 197, 223, 253
MspA1I CMGCKG 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 64, 120, 129
NdeII GATC 2 cut(s) 46, 234
NlaIII CATG 3 cut(s) 24, 71, 295
NspI RCATGY 1 cut(s) 24
PciSI GCTCTTC 2 cut(s) 159, 203
PkrI GCNGC 3 cut(s) 36, 57, 60
PsuI RGATCY 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 190
SapI GCTCTTC 2 cut(s) 159, 203
SatI GCNGC 3 cut(s) 35, 56, 59
Sau3AI GATC 2 cut(s) 46, 234
SduI GDGCHC 1 cut(s) 302
SetI ASST 5 cut(s) 101, 138, 171, 192, 215
SfaNI GCATC 1 cut(s) 171
Sse9I AATT 3 cut(s) 7, 93, 115
SspMI CTAG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 1 cut(s) 138
TasI AATT 3 cut(s) 7, 93, 115
TseI GCWGC 3 cut(s) 34, 55, 58
TspDTI ATGAA 1 cut(s) 105
XceI RCATGY 1 cut(s) 24
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.