FvH4_5g04610

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
2711971 .. 2712772
802 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04610.t1

Sequence Viewer

Length: 333 bp
ATGGGAAACTGCATGGAGACATGTGGACAGAAGCAGCAGCAAGAAGAGGATCAAATGCAGCAGATGCAGAAGCAGAAAGGAGATGAGATTAGGTTTGAGAAGGAAGGCAGCAACAGTTCAGGGAAATTGAGGGTTAAGATTGTGCTGACAAAAGAAGAGCTAGAGATGTTGATGCTTCAGCTGCAAGACAAAGGAGGGAAGAAGAGCTTAGAGGAAGTTCTGGAGGAGATCCAGAAAGGCAGAGGCAACTCAGTACTTGTTGAAGAAGCTTGGAAGCCTTCTTTGGAGAGTATCATGGAAAGCCCTGAACTCTTTGAAGATATGGATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.7

Weight (kDa)

4.68

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64405
fragaria_vesca FvH4_5g04610
prunus_persica Prupe.5G120200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194781
rosa_laevigata RLG00000004170
rosa_roxburghii Rroxscaffold_3G00260990
rosa_rugosa Rorug07G0018300
rosa_samantha Rh7AG146000 Rh7BG145900 Rh7CG149900 Rh7DG147300
rosa_wichuraiana Rw7G012460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 57, 223
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 255
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 2 cut(s) 263, 317
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 4 cut(s) 160, 181, 207, 269
AluI AGCT 4 cut(s) 160, 181, 207, 269
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 57, 223
ApeKI GCWGC 5 cut(s) 34, 37, 58, 108, 181
BbvI GCAGC 5 cut(s) 46, 49, 70, 120, 168
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 161
BisI GCNGC 5 cut(s) 35, 38, 59, 109, 182
BlsI GCNGC 5 cut(s) 36, 39, 60, 110, 183
BmcAI AGTACT 1 cut(s) 255
BmsI GCATC 2 cut(s) 54, 162
BpmI CTGGAG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 5 cut(s) 46, 49, 70, 120, 168
BsmAI GTCTC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 49, 228
BspCNI CTCAG 1 cut(s) 263
BspPI GGATC 2 cut(s) 57, 223
BspQI GCTCTTC 2 cut(s) 150, 197
BssMI GATC 2 cut(s) 49, 228
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 3 cut(s) 39, 150, 197
BstAPI GCANNNNNTGC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 208, 250
BstKTI GATC 2 cut(s) 52, 231
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 2 cut(s) 49, 228
BstMWI GCNNNNNNNGC 2 cut(s) 64, 181
BstNSI RCATGY 1 cut(s) 24
BstV1I GCAGC 5 cut(s) 46, 49, 70, 120, 168
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
Csp6I GTAC 1 cut(s) 254
CviAII CATG 3 cut(s) 13, 21, 295
CviJI RGCY 6 cut(s) 160, 181, 207, 269, 277, 303
CviKI_1 RGCY 6 cut(s) 160, 181, 207, 269, 277, 303
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 208, 250
DpnI GATC 2 cut(s) 51, 230
DpnII GATC 2 cut(s) 49, 228
Eam1104I CTCTTC 3 cut(s) 39, 150, 197
EarI CTCTTC 3 cut(s) 39, 150, 197
Eco57I CTGAAG 1 cut(s) 161
FaeI CATG 3 cut(s) 16, 24, 298
FaiI YATR 4 cut(s) 14, 22, 296, 323
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 3 cut(s) 12, 20, 294
Fnu4HI GCNGC 5 cut(s) 35, 38, 59, 109, 182
Fsp4HI GCNGC 5 cut(s) 35, 38, 59, 109, 182
FspBI CTAG 1 cut(s) 161
GluI GCNGC 5 cut(s) 35, 38, 59, 109, 182
GsuI CTGGAG 1 cut(s) 242
Hin1II CATG 3 cut(s) 16, 24, 298
HindIII AAGCTT 1 cut(s) 267
Hpy166II GTNNAC 1 cut(s) 26
Hpy188III TCNNGA 2 cut(s) 221, 232
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 3 cut(s) 94, 98, 288
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 4 cut(s) 12, 58, 67, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 181
HpyF3I CTNAG 2 cut(s) 208, 250
Hsp92II CATG 3 cut(s) 16, 24, 298
Kzo9I GATC 2 cut(s) 49, 228
LguI GCTCTTC 2 cut(s) 150, 197
LpnPI CCDG 4 cut(s) 105, 206, 245, 318
Lsp1109I GCAGC 5 cut(s) 46, 49, 70, 120, 168
LweI GCATC 2 cut(s) 54, 162
MaeI CTAG 1 cut(s) 161
MalI GATC 2 cut(s) 51, 230
MboI GATC 2 cut(s) 49, 228
MboII GAAGA 6 cut(s) 56, 167, 211, 214, 275, 329
MflI RGATCY 1 cut(s) 228
MluCI AATT 1 cut(s) 125
MnlI CCTC 6 cut(s) 40, 123, 188, 205, 217, 236
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 64, 181
NdeII GATC 2 cut(s) 49, 228
NlaIII CATG 3 cut(s) 16, 24, 298
NspI RCATGY 1 cut(s) 24
PciI ACATGT 1 cut(s) 20
PciSI GCTCTTC 2 cut(s) 150, 197
PkrI GCNGC 5 cut(s) 36, 39, 60, 110, 183
PscI ACATGT 1 cut(s) 20
PsuI RGATCY 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 181
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SapI GCTCTTC 2 cut(s) 150, 197
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 5 cut(s) 35, 38, 59, 109, 182
Sau3AI GATC 2 cut(s) 49, 228
ScaI AGTACT 1 cut(s) 255
SetI ASST 5 cut(s) 95, 162, 183, 209, 271
SfaNI GCATC 2 cut(s) 54, 162
Sse9I AATT 1 cut(s) 125
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 116
TasI AATT 1 cut(s) 125
TatI WGTACW 1 cut(s) 253
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 5 cut(s) 34, 37, 58, 108, 181
XceI RCATGY 1 cut(s) 24
XspI CTAG 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.