AT1G67050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018740
Physical Location & Seq
Reverse (-)
25028538 .. 25029857
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67050.1

Sequence Viewer

Length: 795 bp
ATGGCGGTGGATCTTTTATCGGAAAATTCTAATATGAGTCCAAGAATCTCATTTTCACGTGACTTTTGTCAATCAGACGCAATACCAATCGAGAAACGTCCCTTAAGATCATCAAACTCGAAACCATCAAGCCTCAATTCAAGCATAGATTTCGATTTCTGCATTCCCGGCGGCGTAAATTCCGGCGAAAGCTTCGATCAAGGTTCTTGGTCCGCCGATGAACTCTTCTCTAACGGCAAAATCTTACCAACGGAAATCAAGAAAAAACCAGAACCGGGTAAAAAAGAACCAGAACCAAAACCGGTTAAATCTAAACCGGATTCAAGAAAACAGAGGAAACAACCAAACGAAGAACAACAAGAAGACGACGTGATAATCACGACGGAGGAGAAAACCAATACGAAGTCGTTTTGGGGGTTTAAGAGAAGCAGTAGTTTAAACTGTGGAAGTACTTATGGACGGAGTTTATGTCCGTTACCATTACTAAACCGGAGTAATTCAACCGGTTCAACGTCGAGTAAACAGAAACAGAGCAGCTCAAGGAAACATAACGAGCATGTTAAGTTACAACAATCTTCATCGTTGTCTTCTTCTTCTTCTGCTTCGTCTTCTTTGAGTAATAATGGTTTTTCGAAACCACCATTGAAGAAAAGCTATGGAGGTTATAGTTATGGTAGCCATGGTGGTGGTGGGATTAGAGTGAGTCCGGTTATAAACGTTGTTCCTTCTGGGAATTTGTTTGGTTTTGGTTCAATGTTTTCTGGTAATGGAAGAGACAAGAACAAGAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

28.7

Weight (kDa)

9.68

Isoelectric Point (pI)

65.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018740)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67050 AT5G38320 AT5G38320
malus_domestica MD09G1253400.v1.1 MD17G1245300.v1.1
prunus_persica Prupe.3G143400_v2.0.a1
pyrus_communis pycom09g16930 pycom09g16940 pycom17g24770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 713
AciI CCGC 3 cut(s) 5, 171, 213
AclI AACGTT 1 cut(s) 717
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 3 cut(s) 25, 178, 733
AcvI CACGTG 1 cut(s) 59
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 1 cut(s) 275
AflII CTTAAG 1 cut(s) 103
AgeI ACCGGT 2 cut(s) 301, 503
AgsI TTSAA 6 cut(s) 141, 324, 501, 510, 646, 753
AjiI CACGTC 1 cut(s) 370
AluBI AGCT 3 cut(s) 192, 537, 654
AluI AGCT 3 cut(s) 192, 537, 654
Alw26I GTCTC 1 cut(s) 768
AlwI GGATC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 534
ApoI RAATTY 3 cut(s) 25, 178, 733
AsiGI ACCGGT 2 cut(s) 301, 503
AspS9I GGNCC 1 cut(s) 210
AsuC2I CCSGG 2 cut(s) 168, 276
AsuII TTCGAA 1 cut(s) 632
AvaII GGWCC 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 59
BbsI GAAGAC 3 cut(s) 369, 579, 600
BbvI GCAGC 1 cut(s) 546
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BcnI CCSGG 2 cut(s) 168, 276
BcoDI GTCTC 1 cut(s) 768
BfrI CTTAAG 1 cut(s) 103
BisI GCNGC 2 cut(s) 172, 535
BlsI GCNGC 2 cut(s) 173, 536
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 2 cut(s) 168, 276
Bme18I GGWCC 1 cut(s) 210
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 168, 276
BoxI GACNNNNGTC 1 cut(s) 66
BpiI GAAGAC 3 cut(s) 369, 579, 600
Bpu14I TTCGAA 1 cut(s) 632
BpuEI CTTGAG 1 cut(s) 523
BpuMI CCSGG 2 cut(s) 168, 276
BsaAI YACGTR 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 679
BsaWI WCCGGW 5 cut(s) 301, 316, 489, 503, 706
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 2 cut(s) 301, 503
BseDI CCNNGG 1 cut(s) 679
BseLI CCNNNNNNNGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 546
BshTI ACCGGT 2 cut(s) 301, 503
BsiSI CCGG 8 cut(s) 168, 183, 275, 302, 317, 490, 504, 707
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 768
BsmFI GGGAC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 632
Bsp143I GATC 3 cut(s) 10, 107, 196
Bsp19I CCATGG 1 cut(s) 679
BspACI CCGC 3 cut(s) 5, 171, 213
BspPI GGATC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 632
BspTI CTTAAG 1 cut(s) 103
BsrFI RCCGGY 2 cut(s) 301, 503
BssAI RCCGGY 2 cut(s) 301, 503
BssECI CCNNGG 1 cut(s) 679
BssMI GATC 3 cut(s) 10, 107, 196
BssT1I CCWWGG 1 cut(s) 679
Bst4CI ACNGT 1 cut(s) 443
Bst6I CTCTTC 2 cut(s) 230, 766
BstAFI CTTAAG 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 632
BstDSI CCRYGG 1 cut(s) 679
BstKTI GATC 3 cut(s) 13, 110, 199
BstMAI GTCTC 1 cut(s) 768
BstMBI GATC 3 cut(s) 10, 107, 196
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 560
BstPAI GACNNNNGTC 1 cut(s) 66
BstSCI CCNGG 2 cut(s) 166, 274
BstV1I GCAGC 1 cut(s) 546
BstV2I GAAGAC 3 cut(s) 369, 579, 600
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 686
BstYI RGATCY 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 679
BtrI CACGTC 1 cut(s) 370
Cfr10I RCCGGY 2 cut(s) 301, 503
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 450
CspAI ACCGGT 2 cut(s) 301, 503
CviAII CATG 2 cut(s) 557, 680
CviJI RGCY 5 cut(s) 132, 192, 537, 654, 678
CviKI_1 RGCY 5 cut(s) 132, 192, 537, 654, 678
CviQI GTAC 1 cut(s) 450
DpnI GATC 3 cut(s) 12, 109, 198
DpnII GATC 3 cut(s) 10, 107, 196
DraI TTTAAA 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 230, 766
EarI CTCTTC 2 cut(s) 230, 766
EciI GGCGGA 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 679
Eco47I GGWCC 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 2 cut(s) 560, 683
FaqI GGGAC 1 cut(s) 84
FatI CATG 2 cut(s) 556, 679
Fnu4HI GCNGC 2 cut(s) 172, 535
Fsp4HI GCNGC 2 cut(s) 172, 535
GluI GCNGC 2 cut(s) 172, 535
HapII CCGG 8 cut(s) 168, 183, 275, 302, 317, 490, 504, 707
HgaI GACGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 560, 683
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 4 cut(s) 37, 45, 320, 703
HpaII CCGG 8 cut(s) 168, 183, 275, 302, 317, 490, 504, 707
Hpy166II GTNNAC 1 cut(s) 521
Hpy188I TCNGA 2 cut(s) 22, 76
Hpy188III TCNNGA 4 cut(s) 91, 259, 324, 379
Hpy8I GTNNAC 1 cut(s) 521
Hpy99I CGWCG 3 cut(s) 371, 385, 517
HpyAV CCTTC 1 cut(s) 735
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 5 cut(s) 58, 97, 369, 512, 717
HpyCH4V TGCA 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpySE526I ACGT 5 cut(s) 58, 97, 369, 512, 717
Hsp92II CATG 2 cut(s) 560, 683
Kzo9I GATC 3 cut(s) 10, 107, 196
Lsp1109I GCAGC 1 cut(s) 546
MaeII ACGT 5 cut(s) 58, 97, 369, 512, 717
MaeIII GTNAC 3 cut(s) 59, 474, 564
MalI GATC 3 cut(s) 12, 109, 198
MboI GATC 3 cut(s) 10, 107, 196
MflI RGATCY 1 cut(s) 10
MluCI AATT 5 cut(s) 25, 136, 178, 496, 733
MlyI GAGTC 2 cut(s) 46, 712
MnlI CCTC 4 cut(s) 143, 327, 379, 653
MseI TTAA 5 cut(s) 104, 306, 420, 437, 561
MslI CAYNNNNRTG 1 cut(s) 684
MspCI CTTAAG 1 cut(s) 103
MspI CCGG 8 cut(s) 168, 183, 275, 302, 317, 490, 504, 707
MspR9I CCNGG 2 cut(s) 168, 276
MssI GTTTAAAC 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 168
NciI CCSGG 2 cut(s) 168, 276
NcoI CCATGG 1 cut(s) 679
NdeII GATC 3 cut(s) 10, 107, 196
NlaIII CATG 2 cut(s) 560, 683
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 560
NspV TTCGAA 1 cut(s) 632
PctI GAATGC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 45, 320
PinAI ACCGGT 2 cut(s) 301, 503
PkrI GCNGC 2 cut(s) 173, 536
PleI GAGTC 2 cut(s) 45, 711
PmaCI CACGTG 1 cut(s) 59
PmeI GTTTAAAC 1 cut(s) 438
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 2 cut(s) 45, 711
Ppu21I YACGTR 1 cut(s) 59
PshAI GACNNNNGTC 1 cut(s) 66
PsiI TTATAA 1 cut(s) 713
Psp1406I AACGTT 1 cut(s) 717
PspCI CACGTG 1 cut(s) 59
PspPI GGNCC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 5 cut(s) 104, 306, 420, 437, 561
SatI GCNGC 2 cut(s) 172, 535
Sau3AI GATC 3 cut(s) 10, 107, 196
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 451
SchI GAGTC 2 cut(s) 46, 712
ScrFI CCNGG 2 cut(s) 168, 276
SfuI TTCGAA 1 cut(s) 632
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 2 cut(s) 103, 538
SmoI CTYRAG 2 cut(s) 103, 538
Sse9I AATT 5 cut(s) 25, 136, 178, 496, 733
SsiI CCGC 3 cut(s) 5, 171, 213
StyD4I CCNGG 2 cut(s) 166, 274
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 5 cut(s) 61, 100, 372, 515, 720
TaqI TCGA 6 cut(s) 90, 119, 153, 195, 515, 632
TasI AATT 5 cut(s) 25, 136, 178, 496, 733
TatI WGTACW 1 cut(s) 449
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 45, 320
Tru1I TTAA 5 cut(s) 104, 306, 420, 437, 561
Tru9I TTAA 5 cut(s) 104, 306, 420, 437, 561
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 534
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 234, 567
TspGWI ACGGA 4 cut(s) 266, 398, 462, 475
Vha464I CTTAAG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 3 cut(s) 25, 178, 733
XceI RCATGY 1 cut(s) 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.