AT5G38320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0018740
Physical Location & Seq
Reverse (-)
15316015 .. 15316897
883 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38320.2

Sequence Viewer

Length: 639 bp
ATGCCCGAAAACGCTAATGAAAGTCCAAGAATCTCATTTTCTAACGATTTTTGCCACCACGAGTCCATACCAATCGAGCAGCGTACATCACAATCTCCGTATGATATCTCCAACTTCTATTGGGGCTTTCCTTTGGAGTTTTCAATACCCCGCGGTGCAATCTCCGGCGAGAGCTCCTGGTCCGCGGAAGAGTTCTTCAACGACGGCAAAATCCTCCCTATAGAAATGAAAAAGATCCCGGAACCCATATATCGTAGTAAAACAGATAAATATAAAACCGGTTTACCCAGACCTGAGATAATTCCAATCGAAGATTTTGAACCGGTTCTTGAAATAGAAGAAATTGGAGACCAAGAATATGAGGTAAAGTTGCCATTACTTCCTTATAACTCGACCGGTTCGAATTCTATCAAGAGTCAGGTTTCGTCTTCTTCTTCTTCTTCTTTTAACGGTAGTTTTCCGAAACCGATATTGAAGAACAACCATGGAGGTTATAACTACAAGGGACATGGAGGTGTGATTAGGGTGAGCTCATTTCTGGATATGGTACCTTCGGGGAATTTGTTTGGGTTAGGTTCGATAAATTTTGATGGTGGAAGAAACAAAAACAAGATACGATCAATGTTTTTCTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.92

Weight (kDa)

5.45

Isoelectric Point (pI)

61.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018740)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67050 AT5G38320 AT5G38320
malus_domestica MD09G1253400.v1.1 MD17G1245300.v1.1
prunus_persica Prupe.3G143400_v2.0.a1
pyrus_communis pycom09g16930 pycom09g16940 pycom17g24770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 387, 495
Acc65I GGTACC 1 cut(s) 547
AccB1I GGYRCC 1 cut(s) 547
AccII CGCG 2 cut(s) 153, 185
AciI CCGC 4 cut(s) 151, 153, 183, 185
AclWI GGATC 1 cut(s) 229
AcsI RAATTY 3 cut(s) 403, 559, 583
AfaI GTAC 2 cut(s) 85, 549
AgeI ACCGGT 3 cut(s) 278, 322, 395
AgsI TTSAA 5 cut(s) 144, 199, 320, 332, 475
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 2 cut(s) 174, 531
AluI AGCT 2 cut(s) 174, 531
Alw21I GWGCWC 2 cut(s) 176, 533
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 3 cut(s) 403, 559, 583
AsiGI ACCGGT 3 cut(s) 278, 322, 395
Asp700I GAANNNNTTC 1 cut(s) 324
Asp718I GGTACC 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 538
AsuII TTCGAA 1 cut(s) 401
AvaII GGWCC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 2 cut(s) 176, 533
BauI CACGAG 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 420
Bbv12I GWGCWC 2 cut(s) 176, 533
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 584
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 178
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 2 cut(s) 178, 239
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 2 cut(s) 243, 549
BmrFI CCNGG 2 cut(s) 178, 239
BpiI GAAGAC 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 151, 183, 484
BsaWI WCCGGW 3 cut(s) 278, 322, 395
Bse118I RCCGGY 3 cut(s) 278, 322, 395
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 3 cut(s) 151, 183, 484
BseMII CTCAG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 153, 185
Bsh1285I CGRYCG 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 547
BshTI ACCGGT 3 cut(s) 278, 322, 395
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 176, 533
BsiSI CCGG 5 cut(s) 165, 239, 279, 323, 396
BslFI GGGAC 1 cut(s) 519
BsmAI GTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 519
Bso31I GGTCTC 1 cut(s) 342
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 176, 533
Bsp143I GATC 2 cut(s) 234, 617
Bsp19I CCATGG 1 cut(s) 484
BspACI CCGC 4 cut(s) 151, 153, 183, 185
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 2 cut(s) 153, 185
BspLI GGNNCC 2 cut(s) 243, 549
BspPI GGATC 1 cut(s) 229
BspT104I TTCGAA 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 547
BspTNI GGTCTC 1 cut(s) 342
BsrFI RCCGGY 3 cut(s) 278, 322, 395
BssAI RCCGGY 3 cut(s) 278, 322, 395
BssECI CCNNGG 3 cut(s) 151, 183, 484
BssMI GATC 2 cut(s) 234, 617
BssSI CACGAG 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 484
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 183
BstBI TTCGAA 1 cut(s) 401
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 3 cut(s) 151, 183, 484
BstFNI CGCG 2 cut(s) 153, 185
BstKTI GATC 2 cut(s) 237, 620
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 2 cut(s) 234, 617
BstMCI CGRYCG 1 cut(s) 396
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 176, 237
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 2 cut(s) 153, 185
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BtgI CCRYGG 3 cut(s) 151, 183, 484
Cfr10I RCCGGY 3 cut(s) 278, 322, 395
Cfr13I GGNCC 1 cut(s) 180
Cfr42I CCGCGG 2 cut(s) 154, 186
Csp6I GTAC 2 cut(s) 84, 548
CspAI ACCGGT 3 cut(s) 278, 322, 395
CviAII CATG 2 cut(s) 485, 509
CviJI RGCY 3 cut(s) 126, 174, 531
CviKI_1 RGCY 3 cut(s) 126, 174, 531
CviQI GTAC 2 cut(s) 84, 548
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 236, 619
DpnII GATC 2 cut(s) 234, 617
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Ecl136II GAGCTC 2 cut(s) 174, 531
Eco130I CCWWGG 1 cut(s) 484
Eco24I GRGCYC 2 cut(s) 176, 533
Eco31I GGTCTC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 180
Eco53kI GAGCTC 2 cut(s) 174, 531
EcoICRI GAGCTC 2 cut(s) 174, 531
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 176
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 484
EcoT38I GRGCYC 2 cut(s) 176, 533
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 2 cut(s) 488, 512
FaqI GGGAC 1 cut(s) 519
FatI CATG 2 cut(s) 484, 508
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 80
FriOI GRGCYC 2 cut(s) 176, 533
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
HapII CCGG 5 cut(s) 165, 239, 279, 323, 396
Hin1II CATG 2 cut(s) 488, 512
HinfI GANTC 3 cut(s) 30, 62, 415
HpaII CCGG 5 cut(s) 165, 239, 279, 323, 396
HphI GGTGA 1 cut(s) 538
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 3 cut(s) 329, 412, 539
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 561
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4V TGCA 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 488, 512
KpnI GGTACC 1 cut(s) 551
KspI CCGCGG 2 cut(s) 154, 186
Kzo9I GATC 2 cut(s) 234, 617
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 91
MalI GATC 2 cut(s) 236, 619
MboI GATC 2 cut(s) 234, 617
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 2 cut(s) 176, 533
MluCI AATT 5 cut(s) 300, 342, 403, 559, 583
MlyI GAGTC 2 cut(s) 71, 424
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 4 cut(s) 224, 355, 482, 506
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 513
MspA1I CMGCKG 2 cut(s) 153, 185
MspI CCGG 5 cut(s) 165, 239, 279, 323, 396
MspR9I CCNGG 2 cut(s) 178, 239
MvaI CCWGG 1 cut(s) 178
MvnI CGCG 2 cut(s) 153, 185
NciI CCSGG 1 cut(s) 239
NcoI CCATGG 1 cut(s) 484
NdeII GATC 2 cut(s) 234, 617
NlaIII CATG 2 cut(s) 488, 512
NlaIV GGNNCC 2 cut(s) 243, 549
NspV TTCGAA 1 cut(s) 401
PcsI WCGNNNNNNNCGW 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 237
PinAI ACCGGT 3 cut(s) 278, 322, 395
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 2 cut(s) 70, 423
PpsI GAGTC 2 cut(s) 70, 423
PsiI TTATAA 2 cut(s) 387, 495
Psp124BI GAGCTC 2 cut(s) 176, 533
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 243, 549
PspPI GGNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 234
RsaI GTAC 2 cut(s) 85, 549
RsaNI GTAC 2 cut(s) 84, 548
RseI CAYNNNNRTG 1 cut(s) 513
SacI GAGCTC 2 cut(s) 176, 533
SacII CCGCGG 2 cut(s) 154, 186
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 234, 617
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 2 cut(s) 71, 424
ScrFI CCNGG 2 cut(s) 178, 239
SduI GDGCHC 2 cut(s) 176, 533
SetI ASST 9 cut(s) 176, 295, 366, 423, 493, 517, 533, 553, 577
SfcI CTRYAG 1 cut(s) 219
Sfr303I CCGCGG 2 cut(s) 154, 186
SfuI TTCGAA 1 cut(s) 401
SgrBI CCGCGG 2 cut(s) 154, 186
SinI GGWCC 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 513
Sse9I AATT 5 cut(s) 300, 342, 403, 559, 583
SsiI CCGC 4 cut(s) 151, 153, 183, 185
SstI GAGCTC 2 cut(s) 176, 533
StyD4I CCNGG 2 cut(s) 176, 237
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 5 cut(s) 75, 309, 392, 401, 578
TasI AATT 5 cut(s) 300, 342, 403, 559, 583
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 33, 242
TspGWI ACGGA 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 180
XapI RAATTY 3 cut(s) 403, 559, 583
XmnI GAANNNNTTC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.