Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015415

Physical Location & Seq

Genomic Coordinates Forward (+)

25391338 .. 25393889

Gene Structure 2552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAGATCTGCACTTACTTCAAATCACAACCCACTTGGCTCCTCATTCTCTTCGTTCTGGGGTCAATCTCAATCTTCAAATTCATCTTCACCCTCCTCAGATCTTTCTACATCTACTTCCTCCGACCATCCAAAAACCTCCGCCGATACGGTTCATGGGCAATCATCACCGGACCAACAGACGGAATCGGTAAAGCTTTCGCCTTTCAGTTAGCCCAGAAAGGTCTTAACCTTATACTCGTTGCTCGTAACCCAGACAAGCTCAAAGATGTCTCTGATTCCATCAGATCTAAGTATAGTCAAACTCAGATCTTGACCGTTGTGATGGATTTCTCTGGAGATATTGATGAAGGTGTGAAACGGATTAAGGAGAGTATTGAAGGATTAGATGTTGGGATTTTGATTAATAATGCTGGCATGTCTTATCCTTATGCTAAGTATTTTCATGAGGTTGATGAAGAGTTGATCAATAACTTGATTAAGATCAATGTTGAAGGAACTACTAAAGTTACTCAAGCTGTGTTGCCTAATATGCTTAAGAGGAAGAAAGGTGCTATTATTAATATGGGTTCTGGTGCTGCTGCTCTTATTCCTTCTTATCCTTTTTACTCTGTTTATGCTGGTGCTAAAACGTACGTGGATCAGTTCACAAAGTGTCTACATGTTGAGTATAAGAAGAGTGGGATTGATGTTCAATGCCAGGTTCCCTTGTATGTTGCAACAAAGATGACAAAAATAAGAAGAGCATCCTTCTTAGTTGCATCACCAGAGGGTTACGCAAAGGCAGCACTGCGTTTTGTAGGCTATGAAGCACAATGCACACCGTACTGGCCTCACGCTCTCATGGGTGCAGTTGTCTCTGCATTGCCCGAAAGCGTTTTTGAATCATTTAACATCAAGAGATGCCTCCAGATCCGGAAGAAGGGTCTCCAAAAAGACTCCATGAAGAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000038 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018454 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045703 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

318

Amino Acids

35.76

Weight (kDa)

9.51

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	53 - 247	3.3e-43	short chain dehydrogenase
KR	PF08659	54 - 219	4.1e-06	KR domain
adh_short_C2	PF13561	61 - 245	7.7e-26	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67730
fragaria_vesca	FvH4_4g25050
malus_domestica	MD13G1107000.v1.1 MD16G1107100.v1.1
prunus_persica	Prupe.1G239300_v2.0.a1
pyrus_communis	pycom13g09280 pycom16g09120
rosa_chinensis	RchiOBHm_Chr4g0432221
rosa_laevigata	RLG00000006861
rosa_multiflora	Rmu_sc0004610.1_g000011
rosa_roxburghii	Rroxscaffold_5G00373680
rosa_rugosa	Rorug04G0255300
rosa_samantha	Rh4AG312500 Rh4BG320000 Rh4CG335200
rosa_wichuraiana	Rw4G027160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	658
AccIII	TCCGGA	1 cut(s)	915
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	2 cut(s)	648, 907
AcsI	RAATTY	1 cut(s)	80
AdeI	CACNNNGTG	1 cut(s)	654
AfaI	GTAC	2 cut(s)	635, 827
AfiI	CCNNNNNNNGG	2 cut(s)	182, 922
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	6 cut(s)	22, 79, 380, 494, 695, 884
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	3 cut(s)	197, 262, 518
AluI	AGCT	3 cut(s)	197, 262, 518
Alw26I	GTCTC	3 cut(s)	277, 862, 932
AlwI	GGATC	2 cut(s)	648, 907
Aor13HI	TCCGGA	1 cut(s)	915
AoxI	GGCC	1 cut(s)	830
ApeKI	GCWGC	3 cut(s)	578, 581, 785
ApoI	RAATTY	1 cut(s)	80
AseI	ATTAAT	2 cut(s)	405, 561
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	82, 160, 756
AvaII	GGWCC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	565, 568, 797
BccI	CCATC	3 cut(s)	136, 290, 319
BciT130I	CCWGG	1 cut(s)	701
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	3 cut(s)	277, 862, 932
BfrI	CTTAAG	1 cut(s)	536
BglII	AGATCT	4 cut(s)	6, 101, 287, 309
BisI	GCNGC	3 cut(s)	579, 582, 786
BlsI	GCNGC	3 cut(s)	580, 583, 787
Bme1390I	CCNGG	1 cut(s)	701
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	41, 705
BmrFI	CCNGG	1 cut(s)	701
BmsI	GCATC	3 cut(s)	755, 770, 893
BpmI	CTGGAG	2 cut(s)	357, 893
BpuEI	CTTGAG	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	637
BsaBI	GATNNNNATC	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	932
BsaWI	WCCGGW	2 cut(s)	170, 915
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 922
Bse1I	ACTGG	1 cut(s)	833
Bse3DI	GCAATG	1 cut(s)	863
Bse8I	GATNNNNATC	1 cut(s)	482
BseAI	TCCGGA	1 cut(s)	915
BseBI	CCWGG	1 cut(s)	701
BseGI	GGATG	2 cut(s)	128, 746
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	2 cut(s)	182, 922
BseMI	GCAATG	1 cut(s)	863
BseMII	CTCAG	2 cut(s)	112, 320
BseNI	ACTGG	1 cut(s)	833
BseRI	GAGGAG	2 cut(s)	32, 86
BseXI	GCAGC	3 cut(s)	565, 568, 797
BsgI	GTGCAG	1 cut(s)	870
BshFI	GGCC	1 cut(s)	832
BsiSI	CCGG	2 cut(s)	171, 916
BsiWI	CGTACG	1 cut(s)	633
BslI	CCNNNNNNNGG	2 cut(s)	182, 922
BsmAI	GTCTC	3 cut(s)	277, 862, 932
BsnI	GGCC	1 cut(s)	832
Bso31I	GGTCTC	1 cut(s)	932
Bsp13I	TCCGGA	1 cut(s)	915
Bsp143I	GATC	8 cut(s)	6, 101, 287, 309, 465, 483, 640, 912
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	832
BspCNI	CTCAG	2 cut(s)	111, 319
BspEI	TCCGGA	1 cut(s)	915
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	41, 705
BspPI	GGATC	2 cut(s)	648, 907
BspQI	GCTCTTC	1 cut(s)	736
BspTI	CTTAAG	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	932
BsrDI	GCAATG	1 cut(s)	863
BsrI	ACTGG	1 cut(s)	833
BssMI	GATC	8 cut(s)	6, 101, 287, 309, 465, 483, 640, 912
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	3 cut(s)	152, 319, 825
Bst6I	CTCTTC	4 cut(s)	56, 453, 671, 736
BstAFI	CTTAAG	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	5 cut(s)	98, 291, 306, 435, 754
BstF5I	GGATG	2 cut(s)	128, 746
BstKTI	GATC	8 cut(s)	9, 104, 290, 312, 468, 486, 643, 915
BstMAI	GTCTC	3 cut(s)	277, 862, 932
BstMBI	GATC	8 cut(s)	6, 101, 287, 309, 465, 483, 640, 912
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 785
BstNI	CCWGG	1 cut(s)	701
BstNSI	RCATGY	2 cut(s)	421, 665
BstSCI	CCNGG	1 cut(s)	699
BstV1I	GCAGC	3 cut(s)	565, 568, 797
BstX2I	RGATCY	5 cut(s)	6, 101, 287, 309, 912
BstYI	RGATCY	5 cut(s)	6, 101, 287, 309, 912
BsuRI	GGCC	1 cut(s)	832
BtsCI	GGATG	2 cut(s)	128, 746
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	1 cut(s)	415
CciI	TCATGA	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	634, 826
CviAII	CATG	6 cut(s)	156, 418, 446, 662, 844, 943
CviJI	RGCY	7 cut(s)	40, 197, 215, 262, 518, 804, 832
CviKI_1	RGCY	7 cut(s)	40, 197, 215, 262, 518, 804, 832
CviQI	GTAC	2 cut(s)	634, 826
DdeI	CTNAG	5 cut(s)	98, 291, 306, 435, 754
DpnI	GATC	8 cut(s)	8, 103, 289, 311, 467, 485, 642, 914
DpnII	GATC	8 cut(s)	6, 101, 287, 309, 465, 483, 640, 912
DraIII	CACNNNGTG	1 cut(s)	654
Eam1104I	CTCTTC	4 cut(s)	56, 453, 671, 736
EarI	CTCTTC	4 cut(s)	56, 453, 671, 736
EciI	GGCGGA	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	932
Eco47I	GGWCC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	699
FaeI	CATG	6 cut(s)	159, 421, 449, 665, 847, 946
FatI	CATG	6 cut(s)	155, 417, 445, 661, 843, 942
FbaI	TGATCA	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	658
Fnu4HI	GCNGC	3 cut(s)	579, 582, 786
FokI	GGATG	2 cut(s)	115, 733
Fsp4HI	GCNGC	3 cut(s)	579, 582, 786
GluI	GCNGC	3 cut(s)	579, 582, 786
GsuI	CTGGAG	2 cut(s)	357, 893
HaeIII	GGCC	1 cut(s)	832
HapII	CCGG	2 cut(s)	171, 916
Hin1II	CATG	6 cut(s)	159, 421, 449, 665, 847, 946
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	4 cut(s)	186, 278, 884, 938
HpaII	CCGG	2 cut(s)	171, 916
HphI	GGTGA	3 cut(s)	82, 160, 756
Hpy166II	GTNNAC	2 cut(s)	648, 659
Hpy188I	TCNGA	5 cut(s)	101, 125, 277, 287, 309
Hpy188III	TCNNGA	6 cut(s)	313, 336, 446, 898, 910, 916
Hpy8I	GTNNAC	2 cut(s)	648, 659
HpyAV	CCTTC	6 cut(s)	344, 374, 488, 603, 760, 916
HpyCH4III	ACNGT	3 cut(s)	152, 319, 825
HpyCH4IV	ACGT	2 cut(s)	632, 636
HpyCH4V	TGCA	6 cut(s)	12, 719, 761, 819, 851, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 785
HpyF3I	CTNAG	5 cut(s)	98, 291, 306, 435, 754
HpySE526I	ACGT	2 cut(s)	632, 636
Hsp92II	CATG	6 cut(s)	159, 421, 449, 665, 847, 946
Kpn2I	TCCGGA	1 cut(s)	915
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	8 cut(s)	6, 101, 287, 309, 465, 483, 640, 912
LguI	GCTCTTC	1 cut(s)	736
LmnI	GCTCC	1 cut(s)	45
Lsp1109I	GCAGC	3 cut(s)	565, 568, 797
LweI	GCATC	3 cut(s)	755, 770, 893
MaeII	ACGT	2 cut(s)	632, 636
MaeIII	GTNAC	3 cut(s)	248, 508, 773
MalI	GATC	8 cut(s)	8, 103, 289, 311, 467, 485, 642, 914
MboI	GATC	8 cut(s)	6, 101, 287, 309, 465, 483, 640, 912
MboII	GAAGA	8 cut(s)	43, 67, 79, 470, 556, 688, 753, 931
MflI	RGATCY	5 cut(s)	6, 101, 287, 309, 912
MluCI	AATT	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	932
MmeI	TCCRAC	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	915
MseI	TTAA	7 cut(s)	228, 366, 405, 480, 537, 561, 891
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	2 cut(s)	171, 916
MspR9I	CCNGG	1 cut(s)	701
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	2 cut(s)	532, 785
NdeII	GATC	8 cut(s)	6, 101, 287, 309, 465, 483, 640, 912
NlaIII	CATG	6 cut(s)	159, 421, 449, 665, 847, 946
NlaIV	GGNNCC	2 cut(s)	41, 705
NspI	RCATGY	2 cut(s)	421, 665
PagI	TCATGA	1 cut(s)	445
PciI	ACATGT	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	736
PfeI	GAWTC	3 cut(s)	186, 278, 884
Pfl23II	CGTACG	1 cut(s)	633
PkrI	GCNGC	3 cut(s)	580, 583, 787
PleI	GAGTC	1 cut(s)	932
PpsI	GAGTC	1 cut(s)	932
Ppu21I	YACGTR	1 cut(s)	637
PscI	ACATGT	1 cut(s)	661
PshBI	ATTAAT	2 cut(s)	405, 561
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspLI	CGTACG	1 cut(s)	633
PspN4I	GGNNCC	2 cut(s)	41, 705
PspPI	GGNCC	1 cut(s)	173
PsuI	RGATCY	5 cut(s)	6, 101, 287, 309, 912
RsaI	GTAC	2 cut(s)	635, 827
RsaNI	GTAC	2 cut(s)	634, 826
SapI	GCTCTTC	1 cut(s)	736
SaqAI	TTAA	7 cut(s)	228, 366, 405, 480, 537, 561, 891
SatI	GCNGC	3 cut(s)	579, 582, 786
Sau3AI	GATC	8 cut(s)	6, 101, 287, 309, 465, 483, 640, 912
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	1 cut(s)	701
SfaNI	GCATC	3 cut(s)	755, 770, 893
SinI	GGWCC	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	513, 536
SmoI	CTYRAG	2 cut(s)	513, 536
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	699
TaaI	ACNGT	3 cut(s)	152, 319, 825
TaiI	ACGT	2 cut(s)	635, 639
TasI	AATT	1 cut(s)	80
TfiI	GAWTC	3 cut(s)	186, 278, 884
Tru1I	TTAA	7 cut(s)	228, 366, 405, 480, 537, 561, 891
Tru9I	TTAA	7 cut(s)	228, 366, 405, 480, 537, 561, 891
TscAI	CASTG	1 cut(s)	795
TseI	GCWGC	3 cut(s)	578, 581, 785
TspDTI	ATGAA	6 cut(s)	73, 144, 363, 434, 471, 822
TspGWI	ACGGA	2 cut(s)	198, 376
TspRI	CASTG	1 cut(s)	795
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	173
VspI	ATTAAT	2 cut(s)	405, 561
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	2 cut(s)	421, 665
XmiI	GTMKAC	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.