Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015415

Physical Location & Seq

Genomic Coordinates Forward (+)

26983124 .. 26986043

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAGTGCTGTATGATTGGACACCTAAAGACTCAGCCTTGGTGGGTTTTGGCTCTGTTCACTATTGGCTCCTTGTCCATACTCAGATTCTCACTCTCTGTCCTCAACTGGGTGTTCGTCAATTTCCTCAGACCCGCCAAGAATCTCAGAAAGTACGGATCTTGGGCACTCGTCACCGGACCCACCGACGGCATTGGCAAAGCCTTCGCTTTTCAATTGGCTCGCAAAGGCCTTAATCTGGTCTTGGTCGGCAGAAGCCCCAGTAAGCTGAAGGACGTCTCCGACGCGATTCAGGCCAAGTACGGCAAGACCCAGATCAAGACCGTCGTCGTTGACTTCAGCGGCGACCTGGACGAAGGGGTGAAGAGGATTCAAGAGAGCATTGAGGGTCTGGACTTGGGGGTTCTGATCAACAACGTTGGGATTTCGTATCCTTATGCGAGGTACTTTCACGAAGTGGATGAGGAGTTGTTGAGGAACTTGATTAAGATCAATGTTGAAGGGACCACTAAGGTTACGCAGGCTGTCTTGTTGGGGATGTTGGAGAGGAAGAGAGGAGCTATTGTTAATATTGGGTCGGCTGCTGGGATTATACCCTCTGATCCTCTCTATGCTGTTTACGCAGCTACAAAAGGGTATGTTGATCAGTTCTCTAGGTGCCTTAATGTGGAGTACAAGAACAAGGGGATTGATGTGCAGTGTCAGGTTCCATTGTATGTGGCAACAAAGATGGCATCTATCAAGAGGTCTTCCTTCTTTGTACCATCAACTGATACTTATGCGCGGGCAGGTTTAAACAAGATAGGCTATGAAGCTCGTTGCACTCCTTACTGGCCTCATACTCTTCTTTGGGCTTTGGCAGCCTCAATCCCAGAGTCCATTTTTGACGCATGGCGACTTCGATTTAGCTTAGGCATCCGAAAAAGAGGACAACTCAAAGATTCAAGGAAGAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000038 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018454 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045703 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

320

Amino Acids

35.61

Weight (kDa)

9.62

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	55 - 246	1.1e-40	short chain dehydrogenase
KR	PF08659	55 - 219	5.1e-07	KR domain
adh_short_C2	PF13561	63 - 246	1.1e-24	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67730
fragaria_vesca	FvH4_4g25050
malus_domestica	MD13G1107000.v1.1 MD16G1107100.v1.1
prunus_persica	Prupe.1G239300_v2.0.a1
pyrus_communis	pycom13g09280 pycom16g09120
rosa_chinensis	RchiOBHm_Chr4g0432221
rosa_laevigata	RLG00000006861
rosa_multiflora	Rmu_sc0004610.1_g000011
rosa_roxburghii	Rroxscaffold_5G00373680
rosa_rugosa	Rorug04G0255300
rosa_samantha	Rh4AG312500 Rh4BG320000 Rh4CG335200
rosa_wichuraiana	Rw4G027160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	779
AccB1I	GGYRCC	1 cut(s)	657
AccII	CGCG	2 cut(s)	287, 784
AciI	CCGC	3 cut(s)	135, 342, 784
AclI	AACGTT	1 cut(s)	417
AclWI	GGATC	2 cut(s)	166, 596
AcuI	CTGAAG	2 cut(s)	290, 322
AcyI	GRCGYC	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	457
AfaI	GTAC	5 cut(s)	155, 302, 446, 674, 762
AfiI	CCNNNNNNNGG	4 cut(s)	109, 188, 238, 667
AgsI	TTSAA	4 cut(s)	215, 374, 500, 945
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	5 cut(s)	268, 560, 626, 815, 909
AluI	AGCT	5 cut(s)	268, 560, 626, 815, 909
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	2 cut(s)	166, 596
AoxI	GGCC	3 cut(s)	229, 294, 833
ApeKI	GCWGC	3 cut(s)	581, 623, 860
AspLEI	GCGC	1 cut(s)	784
AspS9I	GGNCC	2 cut(s)	179, 504
AsuHPI	GGTGA	2 cut(s)	166, 373
AvaII	GGWCC	2 cut(s)	179, 504
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	741
BbvI	GCAGC	3 cut(s)	568, 635, 872
BccI	CCATC	2 cut(s)	724, 772
BceAI	ACGGC	2 cut(s)	205, 319
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	441
BclI	TGATCA	2 cut(s)	408, 643
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	654
BfuAI	ACCTGC	1 cut(s)	779
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	4 cut(s)	343, 582, 624, 861
BlsI	GCNGC	4 cut(s)	344, 583, 625, 862
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	179, 504
BmgT120I	GGNCC	2 cut(s)	179, 504
BmiI	GGNNCC	5 cut(s)	70, 181, 505, 659, 708
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	2 cut(s)	118, 255
BmsI	GCATC	2 cut(s)	743, 924
BmuI	ACTGGG	2 cut(s)	118, 255
BoxI	GACNNNNGTC	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	741
BplI	GAGNNNNNCTC	2 cut(s)	918, 950
Bpu10I	CCTNAGC	1 cut(s)	910
BsaBI	GATNNNNATC	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 188, 238, 667
Bse1I	ACTGG	3 cut(s)	113, 261, 836
Bse8I	GATNNNNATC	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	3 cut(s)	466, 543, 915
BseJI	GATNNNNATC	1 cut(s)	488
BseLI	CCNNNNNNNGG	4 cut(s)	109, 188, 238, 667
BseMII	CTCAG	4 cut(s)	47, 97, 142, 160
BseNI	ACTGG	3 cut(s)	113, 261, 836
BseRI	GAGGAG	2 cut(s)	479, 570
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	568, 635, 872
BseYI	CCCAGC	1 cut(s)	584
BsgI	GTGCAG	1 cut(s)	716
Bsh1236I	CGCG	2 cut(s)	287, 784
BshFI	GGCC	3 cut(s)	231, 296, 835
BshNI	GGYRCC	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	4 cut(s)	109, 188, 238, 667
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	517
BsnI	GGCC	3 cut(s)	231, 296, 835
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	6 cut(s)	158, 315, 408, 489, 601, 643
BspACI	CCGC	3 cut(s)	135, 342, 784
BspANI	GGCC	3 cut(s)	231, 296, 835
BspCNI	CTCAG	4 cut(s)	46, 96, 141, 159
BspFNI	CGCG	2 cut(s)	287, 784
BspLI	GGNNCC	5 cut(s)	70, 181, 505, 659, 708
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	2 cut(s)	166, 596
BspT107I	GGYRCC	1 cut(s)	657
BsrI	ACTGG	3 cut(s)	113, 261, 836
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	6 cut(s)	158, 315, 408, 489, 601, 643
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	3 cut(s)	359, 545, 849
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	3 cut(s)	223, 522, 786
BstDEI	CTNAG	6 cut(s)	33, 83, 128, 146, 510, 910
BstF5I	GGATG	3 cut(s)	466, 543, 915
BstFNI	CGCG	2 cut(s)	287, 784
BstHHI	GCGC	1 cut(s)	784
BstKTI	GATC	6 cut(s)	161, 318, 411, 492, 604, 646
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	6 cut(s)	158, 315, 408, 489, 601, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 620, 860
BstNI	CCWGG	1 cut(s)	350
BstPAI	GACNNNNGTC	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	2 cut(s)	287, 784
BstV1I	GCAGC	3 cut(s)	568, 635, 872
BstV2I	GAAGAC	1 cut(s)	741
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	3 cut(s)	231, 296, 835
BtsCI	GGATG	3 cut(s)	466, 543, 915
BtsI	GCAGTG	1 cut(s)	704
BtsIMutI	CAGTG	1 cut(s)	704
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	3 cut(s)	223, 522, 786
CfoI	GCGC	1 cut(s)	784
Cfr13I	GGNCC	2 cut(s)	179, 504
CseI	GACGC	2 cut(s)	293, 896
Csp6I	GTAC	5 cut(s)	154, 301, 445, 673, 761
CviAII	CATG	1 cut(s)	891
CviQI	GTAC	5 cut(s)	154, 301, 445, 673, 761
DdeI	CTNAG	6 cut(s)	33, 83, 128, 146, 510, 910
DpnI	GATC	6 cut(s)	160, 317, 410, 491, 603, 645
DpnII	GATC	6 cut(s)	158, 315, 408, 489, 601, 643
DraI	TTTAAA	1 cut(s)	795
DraIII	CACNNNGTG	1 cut(s)	457
Eam1104I	CTCTTC	3 cut(s)	359, 545, 849
EarI	CTCTTC	3 cut(s)	359, 545, 849
Eco130I	CCWWGG	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	179, 504
Eco57I	CTGAAG	2 cut(s)	290, 322
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	1 cut(s)	894
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	1 cut(s)	890
FauI	CCCGC	2 cut(s)	142, 777
FbaI	TGATCA	2 cut(s)	408, 643
Fnu4HI	GCNGC	4 cut(s)	343, 582, 624, 861
FokI	GGATG	3 cut(s)	473, 550, 902
Fsp4HI	GCNGC	4 cut(s)	343, 582, 624, 861
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	783
GluI	GCNGC	4 cut(s)	343, 582, 624, 861
GsaI	CCCAGC	1 cut(s)	588
HaeIII	GGCC	3 cut(s)	231, 296, 835
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	2 cut(s)	293, 896
HhaI	GCGC	1 cut(s)	784
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	1 cut(s)	894
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	7 cut(s)	31, 87, 142, 289, 370, 875, 941
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	166, 373
Hpy166II	GTNNAC	3 cut(s)	60, 334, 619
Hpy188I	TCNGA	7 cut(s)	86, 131, 149, 283, 408, 601, 920
Hpy188III	TCNNGA	5 cut(s)	319, 374, 392, 452, 742
Hpy8I	GTNNAC	3 cut(s)	60, 334, 619
Hpy99I	CGWCG	4 cut(s)	191, 287, 329, 332
HpyAV	CCTTC	6 cut(s)	214, 265, 350, 494, 763, 946
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	2 cut(s)	276, 417
HpyCH4V	TGCA	2 cut(s)	697, 822
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 620, 860
HpyF3I	CTNAG	6 cut(s)	33, 83, 128, 146, 510, 910
HpySE526I	ACGT	2 cut(s)	276, 417
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	894
HspAI	GCGC	1 cut(s)	782
Ksp22I	TGATCA	2 cut(s)	408, 643
Kzo9I	GATC	6 cut(s)	158, 315, 408, 489, 601, 643
LmnI	GCTCC	2 cut(s)	74, 557
Lsp1109I	GCAGC	3 cut(s)	568, 635, 872
LweI	GCATC	2 cut(s)	743, 924
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	276, 417
MaeIII	GTNAC	2 cut(s)	172, 514
MalI	GATC	6 cut(s)	160, 317, 410, 491, 603, 645
MboI	GATC	6 cut(s)	158, 315, 408, 489, 601, 643
MboII	GAAGA	4 cut(s)	376, 562, 741, 836
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	2 cut(s)	121, 215
MlyI	GAGTC	2 cut(s)	25, 884
MmeI	TCCRAC	2 cut(s)	306, 522
MseI	TTAA	5 cut(s)	234, 486, 567, 663, 794
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	350
MssI	GTTTAAAC	1 cut(s)	795
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	2 cut(s)	287, 784
MwoI	GCNNNNNNNGC	3 cut(s)	293, 620, 860
NdeII	GATC	6 cut(s)	158, 315, 408, 489, 601, 643
NlaIII	CATG	1 cut(s)	894
NlaIV	GGNNCC	5 cut(s)	70, 181, 505, 659, 708
NmuCI	GTSAC	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	231
PfeI	GAWTC	5 cut(s)	87, 142, 289, 370, 941
PkrI	GCNGC	4 cut(s)	344, 583, 625, 862
PleI	GAGTC	2 cut(s)	25, 883
PmeI	GTTTAAAC	1 cut(s)	795
PpsI	GAGTC	2 cut(s)	25, 883
PshAI	GACNNNNGTC	1 cut(s)	326
Psp1406I	AACGTT	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	5 cut(s)	70, 181, 505, 659, 708
PspPI	GGNCC	2 cut(s)	179, 504
PsuI	RGATCY	1 cut(s)	158
RsaI	GTAC	5 cut(s)	155, 302, 446, 674, 762
RsaNI	GTAC	5 cut(s)	154, 301, 445, 673, 761
SaqAI	TTAA	5 cut(s)	234, 486, 567, 663, 794
SatI	GCNGC	4 cut(s)	343, 582, 624, 861
Sau3AI	GATC	6 cut(s)	158, 315, 408, 489, 601, 643
Sau96I	GGNCC	2 cut(s)	179, 504
SchI	GAGTC	2 cut(s)	25, 884
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	2 cut(s)	743, 924
SinI	GGWCC	2 cut(s)	179, 504
Sse9I	AATT	2 cut(s)	121, 215
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	3 cut(s)	135, 342, 784
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	1 cut(s)	654
StuI	AGGCCT	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	2 cut(s)	279, 420
TaqI	TCGA	1 cut(s)	901
TasI	AATT	2 cut(s)	121, 215
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	5 cut(s)	87, 142, 289, 370, 941
Tru1I	TTAA	5 cut(s)	234, 486, 567, 663, 794
Tru9I	TTAA	5 cut(s)	234, 486, 567, 663, 794
TscAI	CASTG	1 cut(s)	704
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	581, 623, 860
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	825
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	179, 504
XspI	CTAG	1 cut(s)	654
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.