Rw4G027160

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
53608838 .. 53610951
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027160.1

Sequence Viewer

Length: 963 bp
ATGGAGTGCTTTATGCTCGGGCGCCTCAAGACTCAGCCTTGGTGGGTTTTGGCTCTGTTCTCTATTGGTTCCTTGTCCATTCTCAGATTCTCAGTCTCTGTACTCAACTGGGTCTTCGTCAATTTCCTCAGACCCGCCAAGAATCTCAAAAAGTACGGATCTTGGGCACTCGTCACCGGGCCCACCGACGGCATTGGCAGAGGCTTTGCTTTTCAGTTGGCTCGCAAAGGGCTCAATCTGGTGTTGGTGGGCCGGAGCCCCAGTAAGCTGAAGGACGTCTCCGATGCGATTCTGGCCAAGTACGGCAAGACCCAGATCAAGACCGTCGTCGTTGACTTCAGCGGCGACCTGGACGACGGCGTGAAGAGGATTCAAGAGAGCATTGAGGGTTTGGATTTGGGGGTCTTGATCAACAACGTTGGGACTTCGTATCCTTATGCCAGGTACTTTCATGAGGTGGATGAGGAGTTGTTGCGGAACTTGATTAAGATAAACGTTGAAGGGACCACTAAGGTTACGCATGCTGTCTTGCCGGGAATGTTGCAGAGGAAGAGAGGAGCTATTGTCAATATTGGGTCCGGTGCCGCCGGGGTTATCCCCTCCGATCCTCTCTATGCTGTTTACGCAGCCACCAAAGCGTATATTGATCAGTTCTCTAGGTGCCTTCATGTGGAGTACAAAAACAAGGGGATTGATGTCCAGTGTCAGGTTCCATTGTATGTGGCAACAAAGATGGCATCTATCAAGAGATCTTCCTTCTTTGTACCATCAGCTGATGGTTATGCGCGGGCAGCTTTAGGCAGCATAGGCTACGAACCTCGTTGCACTCCTTACTGGCCCCATACTCTTATTTGGACTCTCGTATACTTGCTCCCAGAGTCCATTGTTGATGCATATCGACTTCGATTTAACTTGGGCATCCGAAAAAGGGGACAACTCAAAGATTCAAGGAAGAAGGACTAG

Protein Analysis

320

Amino Acids

35.67

Weight (kDa)

9.69

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 55 - 247 2.4e-38 short chain dehydrogenase
KR PF08659 55 - 221 9.2e-06 KR domain
adh_short_C2 PF13561 63 - 247 2.1e-24 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015415)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67730
fragaria_vesca FvH4_4g25050
malus_domestica MD13G1107000.v1.1 MD16G1107100.v1.1
prunus_persica Prupe.1G239300_v2.0.a1
pyrus_communis pycom13g09280 pycom16g09120
rosa_chinensis RchiOBHm_Chr4g0432221
rosa_laevigata RLG00000006861
rosa_multiflora Rmu_sc0004610.1_g000011
rosa_roxburghii Rroxscaffold_5G00373680
rosa_rugosa Rorug04G0255300
rosa_samantha Rh4AG312500 Rh4BG320000 Rh4CG335200
rosa_wichuraiana Rw4G027160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 3 cut(s) 21, 581, 660
AccI GTMKAC 1 cut(s) 864
AccII CGCG 1 cut(s) 787
AciI CCGC 5 cut(s) 135, 342, 475, 585, 787
AclI AACGTT 2 cut(s) 417, 495
AclWI GGATC 2 cut(s) 166, 599
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 290, 322
AcyI GRCGYC 2 cut(s) 22, 276
AfaI GTAC 6 cut(s) 102, 155, 302, 446, 677, 765
AfiI CCNNNNNNNGG 4 cut(s) 188, 670, 706, 928
AgsI TTSAA 3 cut(s) 374, 500, 948
AjnI CCWGG 2 cut(s) 348, 440
AluBI AGCT 4 cut(s) 268, 560, 773, 794
AluI AGCT 4 cut(s) 268, 560, 773, 794
Alw26I GTCTC 2 cut(s) 100, 283
AlwI GGATC 2 cut(s) 166, 599
AlwNI CAGNNNCTG 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 4 cut(s) 179, 250, 294, 836
ApaI GGGCCC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 626, 791, 801
AspLEI GCGC 2 cut(s) 24, 787
AspS9I GGNCC 6 cut(s) 179, 180, 250, 504, 576, 837
AsuC2I CCSGG 3 cut(s) 178, 534, 589
AsuHPI GGTGA 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 17
AvaII GGWCC 2 cut(s) 504, 576
BaeGI GKGCMC 2 cut(s) 169, 183
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 3 cut(s) 21, 581, 660
BanII GRGCYC 3 cut(s) 183, 234, 260
BbsI GAAGAC 1 cut(s) 106
BbvI GCAGC 3 cut(s) 638, 803, 813
BccI CCATC 3 cut(s) 727, 770, 775
BceAI ACGGC 3 cut(s) 205, 319, 373
BciT130I CCWGG 2 cut(s) 350, 442
BciVI GTATCC 1 cut(s) 441
BclI TGATCA 2 cut(s) 408, 646
BcnI CCSGG 3 cut(s) 178, 534, 589
BcoDI GTCTC 2 cut(s) 100, 283
BfaI CTAG 2 cut(s) 657, 961
BfoI RGCGCY 1 cut(s) 25
BfuI GTATCC 1 cut(s) 441
BglII AGATCT 1 cut(s) 749
BisI GCNGC 5 cut(s) 343, 585, 627, 792, 802
BlsI GCNGC 5 cut(s) 344, 586, 628, 793, 803
Bme1390I CCNGG 5 cut(s) 178, 350, 442, 534, 589
Bme18I GGWCC 2 cut(s) 504, 576
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 6 cut(s) 179, 180, 250, 504, 576, 837
BmrFI CCNGG 5 cut(s) 178, 350, 442, 534, 589
BmrI ACTGGG 2 cut(s) 118, 255
BmsI GCATC 4 cut(s) 274, 746, 880, 927
BmuI ACTGGG 2 cut(s) 118, 255
BoxI GACNNNNGTC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 11
BpuMI CCSGG 3 cut(s) 178, 534, 589
BsaBI GATNNNNATC 1 cut(s) 894
BsaHI GRCGYC 2 cut(s) 22, 276
BsaJI CCNNGG 2 cut(s) 38, 588
BsaWI WCCGGW 1 cut(s) 578
BsaXI ACNNNNNCTCC 4 cut(s) 247, 277, 549, 579
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 670, 706, 928
Bse1I ACTGG 4 cut(s) 113, 261, 700, 839
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 2 cut(s) 350, 442
BseDI CCNNGG 2 cut(s) 38, 588
BseGI GGATG 2 cut(s) 466, 918
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 4 cut(s) 188, 670, 706, 928
BseMII CTCAG 4 cut(s) 47, 97, 105, 142
BseNI ACTGG 4 cut(s) 113, 261, 700, 839
BseRI GAGGAG 2 cut(s) 479, 570
BseSI GKGCMC 2 cut(s) 169, 183
BseXI GCAGC 3 cut(s) 638, 803, 813
Bsh1236I CGCG 1 cut(s) 787
BshFI GGCC 4 cut(s) 181, 252, 296, 838
BshNI GGYRCC 3 cut(s) 21, 581, 660
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 5 cut(s) 177, 253, 533, 579, 588
BslFI GGGAC 3 cut(s) 436, 517, 945
BslI CCNNNNNNNGG 4 cut(s) 188, 670, 706, 928
BsmAI GTCTC 2 cut(s) 100, 283
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 3 cut(s) 436, 517, 945
BsnI GGCC 4 cut(s) 181, 252, 296, 838
BsoBI CYCGRG 1 cut(s) 17
Bsp120I GGGCCC 1 cut(s) 179
Bsp1286I GDGCHC 4 cut(s) 169, 183, 234, 260
Bsp143I GATC 6 cut(s) 158, 315, 408, 604, 646, 749
BspACI CCGC 5 cut(s) 135, 342, 475, 585, 787
BspANI GGCC 4 cut(s) 181, 252, 296, 838
BspCNI CTCAG 4 cut(s) 46, 96, 104, 141
BspFNI CGCG 1 cut(s) 787
BspHI TCATGA 1 cut(s) 451
BspPI GGATC 2 cut(s) 166, 599
BspT107I GGYRCC 3 cut(s) 21, 581, 660
BsrI ACTGG 4 cut(s) 113, 261, 700, 839
BssECI CCNNGG 2 cut(s) 38, 588
BssMI GATC 6 cut(s) 158, 315, 408, 604, 646, 749
BssNAI GTATAC 1 cut(s) 865
BssNI GRCGYC 2 cut(s) 22, 276
BssT1I CCWWGG 1 cut(s) 38
Bst1107I GTATAC 1 cut(s) 865
Bst2UI CCWGG 2 cut(s) 350, 442
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 2 cut(s) 359, 545
BstACI GRCGYC 2 cut(s) 22, 276
BstC8I GCNNGC 3 cut(s) 223, 522, 789
BstDEI CTNAG 5 cut(s) 33, 83, 91, 128, 510
BstF5I GGATG 2 cut(s) 466, 918
BstFNI CGCG 1 cut(s) 787
BstH2I RGCGCY 1 cut(s) 25
BstHHI GCGC 2 cut(s) 24, 787
BstKTI GATC 6 cut(s) 161, 318, 411, 607, 649, 752
BstMAI GTCTC 2 cut(s) 100, 283
BstMBI GATC 6 cut(s) 158, 315, 408, 604, 646, 749
BstMWI GCNNNNNNNGC 5 cut(s) 293, 623, 635, 791, 807
BstNI CCWGG 2 cut(s) 350, 442
BstNSI RCATGY 1 cut(s) 524
BstPAI GACNNNNGTC 1 cut(s) 326
BstSCI CCNGG 5 cut(s) 176, 348, 440, 532, 587
BstSLI GKGCMC 2 cut(s) 169, 183
BstUI CGCG 1 cut(s) 787
BstV1I GCAGC 3 cut(s) 638, 803, 813
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 2 cut(s) 158, 749
BstYI RGATCY 2 cut(s) 158, 749
BstZ17I GTATAC 1 cut(s) 865
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 4 cut(s) 181, 252, 296, 838
BtsCI GGATG 2 cut(s) 466, 918
BtsIMutI CAGTG 1 cut(s) 707
Cac8I GCNNGC 3 cut(s) 223, 522, 789
CaiI CAGNNNCTG 1 cut(s) 98
CciI TCATGA 1 cut(s) 451
CfoI GCGC 2 cut(s) 24, 787
Cfr13I GGNCC 6 cut(s) 179, 180, 250, 504, 576, 837
Csp6I GTAC 6 cut(s) 101, 154, 301, 445, 676, 764
CviAII CATG 3 cut(s) 452, 521, 668
CviQI GTAC 6 cut(s) 101, 154, 301, 445, 676, 764
DdeI CTNAG 5 cut(s) 33, 83, 91, 128, 510
DinI GGCGCC 1 cut(s) 23
DpnI GATC 6 cut(s) 160, 317, 410, 606, 648, 751
DpnII GATC 6 cut(s) 158, 315, 408, 604, 646, 749
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 359, 545
EarI CTCTTC 2 cut(s) 359, 545
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 3 cut(s) 183, 234, 260
Eco47I GGWCC 2 cut(s) 504, 576
Eco57I CTGAAG 2 cut(s) 290, 322
Eco88I CYCGRG 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 348, 440
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 895
EcoT38I GRGCYC 3 cut(s) 183, 234, 260
EgeI GGCGCC 1 cut(s) 23
EheI GGCGCC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 3 cut(s) 455, 524, 671
FaqI GGGAC 3 cut(s) 436, 517, 945
FatI CATG 3 cut(s) 451, 520, 667
FauI CCCGC 2 cut(s) 142, 780
FbaI TGATCA 2 cut(s) 408, 646
FblI GTMKAC 1 cut(s) 864
Fnu4HI GCNGC 5 cut(s) 343, 585, 627, 792, 802
FokI GGATG 2 cut(s) 473, 905
FriOI GRGCYC 3 cut(s) 183, 234, 260
Fsp4HI GCNGC 5 cut(s) 343, 585, 627, 792, 802
FspBI CTAG 2 cut(s) 657, 961
GlaI GCGC 2 cut(s) 23, 786
GluI GCNGC 5 cut(s) 343, 585, 627, 792, 802
HaeII RGCGCY 1 cut(s) 25
HaeIII GGCC 4 cut(s) 181, 252, 296, 838
HapII CCGG 5 cut(s) 177, 253, 533, 579, 588
HhaI GCGC 2 cut(s) 24, 787
Hin1I GRCGYC 2 cut(s) 22, 276
Hin1II CATG 3 cut(s) 455, 524, 671
Hin6I GCGC 2 cut(s) 22, 785
HinP1I GCGC 2 cut(s) 22, 785
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 8 cut(s) 31, 87, 142, 289, 370, 856, 878, 944
HpaII CCGG 5 cut(s) 177, 253, 533, 579, 588
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 3 cut(s) 334, 622, 865
Hpy188I TCNGA 5 cut(s) 86, 131, 283, 604, 923
Hpy188III TCNNGA 6 cut(s) 28, 319, 374, 406, 452, 745
Hpy8I GTNNAC 3 cut(s) 334, 622, 865
Hpy99I CGWCG 4 cut(s) 191, 329, 332, 359
HpyAV CCTTC 5 cut(s) 265, 494, 674, 766, 949
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 3 cut(s) 276, 417, 495
HpyCH4V TGCA 3 cut(s) 544, 825, 893
HpyF10VI GCNNNNNNNGC 5 cut(s) 293, 623, 635, 791, 807
HpyF3I CTNAG 5 cut(s) 33, 83, 91, 128, 510
HpySE526I ACGT 3 cut(s) 276, 417, 495
Hsp92I GRCGYC 2 cut(s) 22, 276
Hsp92II CATG 3 cut(s) 455, 524, 671
HspAI GCGC 2 cut(s) 22, 785
KasI GGCGCC 1 cut(s) 21
Ksp22I TGATCA 2 cut(s) 408, 646
Kzo9I GATC 6 cut(s) 158, 315, 408, 604, 646, 749
LmnI GCTCC 3 cut(s) 255, 557, 876
Lsp1109I GCAGC 3 cut(s) 638, 803, 813
LweI GCATC 4 cut(s) 274, 746, 880, 927
MaeI CTAG 2 cut(s) 657, 961
MaeII ACGT 3 cut(s) 276, 417, 495
MaeIII GTNAC 2 cut(s) 172, 514
MalI GATC 6 cut(s) 160, 317, 410, 606, 648, 751
MboI GATC 6 cut(s) 158, 315, 408, 604, 646, 749
MboII GAAGA 4 cut(s) 106, 376, 562, 744
MflI RGATCY 2 cut(s) 158, 749
MhlI GDGCHC 4 cut(s) 169, 183, 234, 260
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 1 cut(s) 121
MluNI TGGCCA 1 cut(s) 296
Mly113I GGCGCC 1 cut(s) 22
MlyI GAGTC 3 cut(s) 25, 850, 887
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 895
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 486, 909
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 2 cut(s) 342, 773
MspI CCGG 5 cut(s) 177, 253, 533, 579, 588
MspR9I CCNGG 5 cut(s) 178, 350, 442, 534, 589
MvaI CCWGG 2 cut(s) 350, 442
MvnI CGCG 1 cut(s) 787
MwoI GCNNNNNNNGC 5 cut(s) 293, 623, 635, 791, 807
NarI GGCGCC 1 cut(s) 22
NciI CCSGG 3 cut(s) 178, 534, 589
NdeII GATC 6 cut(s) 158, 315, 408, 604, 646, 749
NlaIII CATG 3 cut(s) 455, 524, 671
NmuCI GTSAC 1 cut(s) 172
NsiI ATGCAT 1 cut(s) 895
NspI RCATGY 1 cut(s) 524
PaeI GCATGC 1 cut(s) 524
PagI TCATGA 1 cut(s) 451
PfeI GAWTC 5 cut(s) 87, 142, 289, 370, 944
PkrI GCNGC 5 cut(s) 344, 586, 628, 793, 803
PleI GAGTC 3 cut(s) 25, 850, 886
PluTI GGCGCC 1 cut(s) 25
PpsI GAGTC 3 cut(s) 25, 850, 886
PshAI GACNNNNGTC 1 cut(s) 326
Psp1406I AACGTT 2 cut(s) 417, 495
Psp6I CCWGG 2 cut(s) 348, 440
PspGI CCWGG 2 cut(s) 348, 440
PspOMI GGGCCC 1 cut(s) 179
PspPI GGNCC 6 cut(s) 179, 180, 250, 504, 576, 837
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 2 cut(s) 158, 749
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 6 cut(s) 102, 155, 302, 446, 677, 765
RsaNI GTAC 6 cut(s) 101, 154, 301, 445, 676, 764
SaqAI TTAA 2 cut(s) 486, 909
SatI GCNGC 5 cut(s) 343, 585, 627, 792, 802
Sau3AI GATC 6 cut(s) 158, 315, 408, 604, 646, 749
Sau96I GGNCC 6 cut(s) 179, 180, 250, 504, 576, 837
SchI GAGTC 3 cut(s) 25, 850, 887
ScrFI CCNGG 5 cut(s) 178, 350, 442, 534, 589
SduI GDGCHC 4 cut(s) 169, 183, 234, 260
SfaNI GCATC 4 cut(s) 274, 746, 880, 927
SfoI GGCGCC 1 cut(s) 23
SinI GGWCC 2 cut(s) 504, 576
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SphI GCATGC 1 cut(s) 524
Sse9I AATT 1 cut(s) 121
SsiI CCGC 5 cut(s) 135, 342, 475, 585, 787
SspDI GGCGCC 1 cut(s) 21
SspI AATATT 1 cut(s) 571
SspMI CTAG 2 cut(s) 657, 961
StyD4I CCNGG 5 cut(s) 176, 348, 440, 532, 587
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 3 cut(s) 279, 420, 498
TaqI TCGA 2 cut(s) 898, 904
TasI AATT 1 cut(s) 121
TatI WGTACW 2 cut(s) 100, 675
TauI GCSGC 2 cut(s) 345, 587
TfiI GAWTC 5 cut(s) 87, 142, 289, 370, 944
Tru1I TTAA 2 cut(s) 486, 909
Tru9I TTAA 2 cut(s) 486, 909
TscAI CASTG 1 cut(s) 707
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 3 cut(s) 626, 791, 801
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 440, 656
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 707
VpaK11BI GGWCC 2 cut(s) 504, 576
XceI RCATGY 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 864
XspI CTAG 2 cut(s) 657, 961
ZraI GACGTC 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.