Prupe.1G239300_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
25372875 .. 25375747
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G239300.1

Sequence Viewer

Length: 963 bp
ATGGGTTTTTGTCTACTGGAGCACCTCAAGACTCAGCCTTTCTGGCTCGTTGTGCTTTTCACTCTGGGTTCTCTCTCTGTTCTCAGATTCTCTTTAGCTTTCCTCCAATGGGTCTATGTCAATTTCCTCAGACCTGCTAAGAATCTCAAAAAGTATGGATCATGGGCACTCGTCACTGGACCCACTGACGGCATTGGCAAAGCCTTCGCCTTTCAATTGGCTCGTAAAGGGCTCAATCTGGTCTTGATGGGTCGCAACCCAGAAAAGCTCAAGGACGTCTCAGATTCAATCCTGGCCAAATACGGCAAAACCCAGATCAAGACCGTCGTGGTTGATTTCACTGGTGACCTTGACGATGGTGTTAAGCGCATTCGTGAGACCATTGAAGGATTGGATGTGGGTCTTTTGGTTAACAACGTTGGGATATCGTACCCGTACGCTAGGTTCTTTCATGAAGTGGATGAGGAACTGTTGAAGAACTTGATAAAGGTCAATGTTGAAGGCACTACAAAAGTTACTCAAGCTGTTTTGCCAGGGATGCTTCAGAGGAAGAGAGGCGCTATCGTCAATATTGGGTCTGGTGCTGCGATTGTGATCCCCTCAGATCCTCTCTATGCTGTTTACGCAGCTACAAAAGCGTATATTGATCAGTTCTCTAGGTGTCTCTATGTTGAATACAAGCAAAGTGGGATTGACGTTCAGTGTCAGGTTCCATTGTATGTGGCAACAAAGATGGCATCTATCAGGAGATCTTCCTTCTTTGTACCATCAACTGATGGTTATGCCCGGGCAGCTCTGCGCTGGATAGGGTATGAACCTCGTTGCACTCCTTACTGGCCCCATACGCTTCTTTGGGCCTTGGCATCCTCATTGCCAGAGTCTGTTGTTGACGCATGGCGCCTGCGATTTTGCCTGGCTATTCGAAAGAGGGGACAACTCAAAGATTCCCAGAAGCAAGAATAG

Protein Analysis

321

Amino Acids

35.94

Weight (kDa)

9.53

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015415)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67730
fragaria_vesca FvH4_4g25050
malus_domestica MD13G1107000.v1.1 MD16G1107100.v1.1
prunus_persica Prupe.1G239300_v2.0.a1
pyrus_communis pycom13g09280 pycom16g09120
rosa_chinensis RchiOBHm_Chr4g0432221
rosa_laevigata RLG00000006861
rosa_multiflora Rmu_sc0004610.1_g000011
rosa_roxburghii Rroxscaffold_5G00373680
rosa_rugosa Rorug04G0255300
rosa_samantha Rh4AG312500 Rh4BG320000 Rh4CG335200
rosa_wichuraiana Rw4G027160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 142
AccB1I GGYRCC 1 cut(s) 897
AccI GTMKAC 1 cut(s) 13
AclI AACGTT 1 cut(s) 417
AclWI GGATC 3 cut(s) 166, 589, 599
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 527
AcyI GRCGYC 2 cut(s) 276, 898
AfaI GTAC 3 cut(s) 431, 437, 765
AfiI CCNNNNNNNGG 2 cut(s) 109, 188
AgsI TTSAA 6 cut(s) 215, 288, 386, 475, 500, 674
AjnI CCWGG 3 cut(s) 291, 532, 912
AluBI AGCT 5 cut(s) 98, 268, 524, 629, 794
AluI AGCT 5 cut(s) 98, 268, 524, 629, 794
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 3 cut(s) 283, 371, 668
AlwI GGATC 3 cut(s) 166, 589, 599
AlwNI CAGNNNCTG 1 cut(s) 881
Ama87I CYCGRG 1 cut(s) 786
AoxI GGCC 3 cut(s) 294, 836, 855
ApeKI GCWGC 3 cut(s) 584, 626, 791
AspLEI GCGC 4 cut(s) 369, 560, 801, 900
AspS9I GGNCC 3 cut(s) 179, 837, 855
AsuC2I CCSGG 2 cut(s) 787, 788
AsuHPI GGTGA 1 cut(s) 356
AsuII TTCGAA 1 cut(s) 922
AvaI CYCGRG 1 cut(s) 786
AvaII GGWCC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 169
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 897
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 3 cut(s) 571, 638, 803
BccI CCATC 5 cut(s) 241, 350, 727, 770, 775
BceAI ACGGC 2 cut(s) 205, 319
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 3 cut(s) 293, 534, 914
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 2 cut(s) 787, 788
BcoDI GTCTC 3 cut(s) 283, 371, 668
BfaI CTAG 2 cut(s) 441, 657
BfoI RGCGCY 2 cut(s) 561, 901
BfuAI ACCTGC 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 749
BisI GCNGC 3 cut(s) 585, 627, 792
BlsI GCNGC 3 cut(s) 586, 628, 793
Bme1390I CCNGG 5 cut(s) 293, 534, 787, 788, 914
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 786
BmgT120I GGNCC 3 cut(s) 179, 837, 855
BmiI GGNNCC 4 cut(s) 181, 711, 839, 899
BmrFI CCNGG 5 cut(s) 293, 534, 787, 788, 914
BmsI GCATC 3 cut(s) 528, 746, 872
BpmI CTGGAG 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 922
BpuEI CTTGAG 3 cut(s) 11, 254, 504
BpuMI CCSGG 2 cut(s) 787, 788
BsaBI GATNNNNATC 1 cut(s) 593
BsaHI GRCGYC 2 cut(s) 276, 898
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 533, 786, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 188
Bse1I ACTGG 4 cut(s) 21, 181, 346, 839
Bse3DI GCAATG 1 cut(s) 869
Bse8I GATNNNNATC 1 cut(s) 593
BseBI CCWGG 3 cut(s) 293, 534, 914
BseDI CCNNGG 3 cut(s) 533, 786, 858
BseGI GGATG 4 cut(s) 400, 466, 543, 863
BseJI GATNNNNATC 1 cut(s) 593
BseLI CCNNNNNNNGG 2 cut(s) 109, 188
BseMI GCAATG 1 cut(s) 869
BseMII CTCAG 5 cut(s) 47, 97, 142, 294, 615
BseNI ACTGG 4 cut(s) 21, 181, 346, 839
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 3 cut(s) 571, 638, 803
BshFI GGCC 3 cut(s) 296, 838, 857
BshNI GGYRCC 1 cut(s) 897
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 786
BsiSI CCGG 1 cut(s) 787
BsiWI CGTACG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 2 cut(s) 109, 188
BsmAI GTCTC 3 cut(s) 283, 371, 668
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 945
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 3 cut(s) 296, 838, 857
Bso31I GGTCTC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 786
Bsp119I TTCGAA 1 cut(s) 922
Bsp1286I GDGCHC 3 cut(s) 24, 169, 234
Bsp143I GATC 6 cut(s) 158, 315, 594, 604, 646, 749
BspANI GGCC 3 cut(s) 296, 838, 857
BspCNI CTCAG 5 cut(s) 46, 96, 141, 293, 614
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 4 cut(s) 181, 711, 839, 899
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 3 cut(s) 166, 589, 599
BspT104I TTCGAA 1 cut(s) 922
BspT107I GGYRCC 1 cut(s) 897
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 869
BsrI ACTGG 4 cut(s) 21, 181, 346, 839
BssECI CCNNGG 3 cut(s) 533, 786, 858
BssMI GATC 6 cut(s) 158, 315, 594, 604, 646, 749
BssNI GRCGYC 2 cut(s) 276, 898
BssT1I CCWWGG 1 cut(s) 858
Bst2UI CCWGG 3 cut(s) 293, 534, 914
Bst4CI ACNGT 2 cut(s) 325, 471
Bst6I CTCTTC 1 cut(s) 545
BstACI GRCGYC 2 cut(s) 276, 898
BstBI TTCGAA 1 cut(s) 922
BstC8I GCNNGC 1 cut(s) 902
BstDEI CTNAG 6 cut(s) 33, 83, 128, 138, 280, 601
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 4 cut(s) 400, 466, 543, 863
BstH2I RGCGCY 2 cut(s) 561, 901
BstHHI GCGC 4 cut(s) 369, 560, 801, 900
BstKTI GATC 6 cut(s) 161, 318, 597, 607, 649, 752
BstMAI GTCTC 3 cut(s) 283, 371, 668
BstMBI GATC 6 cut(s) 158, 315, 594, 604, 646, 749
BstMWI GCNNNNNNNGC 7 cut(s) 43, 52, 538, 623, 635, 791, 844
BstNI CCWGG 3 cut(s) 293, 534, 914
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 5 cut(s) 291, 532, 785, 786, 912
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 3 cut(s) 571, 638, 803
BstX2I RGATCY 2 cut(s) 604, 749
BstYI RGATCY 2 cut(s) 604, 749
BsuRI GGCC 3 cut(s) 296, 838, 857
BtsCI GGATG 4 cut(s) 400, 466, 543, 863
BtsIMutI CAGTG 4 cut(s) 174, 183, 339, 707
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 902
CaiI CAGNNNCTG 1 cut(s) 881
CciI TCATGA 1 cut(s) 451
CfoI GCGC 4 cut(s) 369, 560, 801, 900
Cfr13I GGNCC 3 cut(s) 179, 837, 855
Cfr9I CCCGGG 1 cut(s) 786
CseI GACGC 1 cut(s) 899
Csp6I GTAC 3 cut(s) 430, 436, 764
CspCI CAANNNNNGTGG 2 cut(s) 667, 702
CviAII CATG 3 cut(s) 162, 452, 894
CviQI GTAC 3 cut(s) 430, 436, 764
DdeI CTNAG 6 cut(s) 33, 83, 128, 138, 280, 601
DinI GGCGCC 1 cut(s) 899
DpnI GATC 6 cut(s) 160, 317, 596, 606, 648, 751
DpnII GATC 6 cut(s) 158, 315, 594, 604, 646, 749
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 858
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 371
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 786
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
EcoRII CCWGG 3 cut(s) 291, 532, 912
EcoRV GATATC 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 858
EcoT38I GRGCYC 1 cut(s) 234
EgeI GGCGCC 1 cut(s) 899
EheI GGCGCC 1 cut(s) 899
ErhI CCWWGG 1 cut(s) 858
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 3 cut(s) 165, 455, 897
FaqI GGGAC 1 cut(s) 945
FatI CATG 3 cut(s) 161, 451, 893
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 585, 627, 792
FokI GGATG 4 cut(s) 407, 473, 550, 850
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 3 cut(s) 585, 627, 792
FspBI CTAG 2 cut(s) 441, 657
GlaI GCGC 4 cut(s) 368, 559, 800, 899
GluI GCNGC 3 cut(s) 585, 627, 792
GsuI CTGGAG 1 cut(s) 38
HaeII RGCGCY 2 cut(s) 561, 901
HaeIII GGCC 3 cut(s) 296, 838, 857
HapII CCGG 1 cut(s) 787
HgaI GACGC 1 cut(s) 899
HhaI GCGC 4 cut(s) 369, 560, 801, 900
Hin1I GRCGYC 2 cut(s) 276, 898
Hin1II CATG 3 cut(s) 165, 455, 897
Hin6I GCGC 4 cut(s) 367, 558, 799, 898
HinP1I GCGC 4 cut(s) 367, 558, 799, 898
HincII GTYRAC 2 cut(s) 412, 889
HindII GTYRAC 2 cut(s) 412, 889
HinfI GANTC 6 cut(s) 31, 87, 142, 284, 878, 944
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 1 cut(s) 787
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 4 cut(s) 14, 412, 622, 889
Hpy188I TCNGA 5 cut(s) 86, 131, 283, 546, 604
Hpy188III TCNNGA 6 cut(s) 28, 244, 319, 374, 452, 745
Hpy8I GTNNAC 4 cut(s) 14, 412, 622, 889
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 4 cut(s) 214, 380, 494, 766
HpyCH4III ACNGT 2 cut(s) 325, 471
HpyCH4IV ACGT 3 cut(s) 276, 417, 696
HpyCH4V TGCA 1 cut(s) 825
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 52, 538, 623, 635, 791, 844
HpyF3I CTNAG 6 cut(s) 33, 83, 128, 138, 280, 601
HpySE526I ACGT 3 cut(s) 276, 417, 696
Hsp92I GRCGYC 2 cut(s) 276, 898
Hsp92II CATG 3 cut(s) 165, 455, 897
HspAI GCGC 4 cut(s) 367, 558, 799, 898
KasI GGCGCC 1 cut(s) 897
Ksp22I TGATCA 1 cut(s) 646
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 6 cut(s) 158, 315, 594, 604, 646, 749
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 3 cut(s) 571, 638, 803
LweI GCATC 3 cut(s) 528, 746, 872
MaeI CTAG 2 cut(s) 441, 657
MaeII ACGT 3 cut(s) 276, 417, 696
MaeIII GTNAC 3 cut(s) 172, 344, 514
MalI GATC 6 cut(s) 160, 317, 596, 606, 648, 751
MboI GATC 6 cut(s) 158, 315, 594, 604, 646, 749
MboII GAAGA 3 cut(s) 487, 562, 744
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 2 cut(s) 604, 749
MhlI GDGCHC 3 cut(s) 24, 169, 234
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 2 cut(s) 121, 215
MluNI TGGCCA 1 cut(s) 296
Mly113I GGCGCC 1 cut(s) 898
MlyI GAGTC 2 cut(s) 25, 887
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 363, 411
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 1 cut(s) 787
MspR9I CCNGG 5 cut(s) 293, 534, 787, 788, 914
MunI CAATTG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 3 cut(s) 293, 534, 914
MwoI GCNNNNNNNGC 7 cut(s) 43, 52, 538, 623, 635, 791, 844
NarI GGCGCC 1 cut(s) 898
NciI CCSGG 2 cut(s) 787, 788
NdeII GATC 6 cut(s) 158, 315, 594, 604, 646, 749
NlaIII CATG 3 cut(s) 165, 455, 897
NlaIV GGNNCC 4 cut(s) 181, 711, 839, 899
NmuCI GTSAC 2 cut(s) 172, 344
NspV TTCGAA 1 cut(s) 922
PagI TCATGA 1 cut(s) 451
PctI GAATGC 1 cut(s) 369
PfeI GAWTC 4 cut(s) 87, 142, 284, 944
Pfl23II CGTACG 1 cut(s) 435
PkrI GCNGC 3 cut(s) 586, 628, 793
PleI GAGTC 2 cut(s) 25, 886
PluTI GGCGCC 1 cut(s) 901
PpsI GAGTC 2 cut(s) 25, 886
Psp1406I AACGTT 1 cut(s) 417
Psp6I CCWGG 3 cut(s) 291, 532, 912
PspEI GGTNACC 1 cut(s) 344
PspGI CCWGG 3 cut(s) 291, 532, 912
PspLI CGTACG 1 cut(s) 435
PspN4I GGNNCC 4 cut(s) 181, 711, 839, 899
PspPI GGNCC 3 cut(s) 179, 837, 855
PsrI GAACNNNNNNTAC 2 cut(s) 428, 460
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 2 cut(s) 604, 749
RsaI GTAC 3 cut(s) 431, 437, 765
RsaNI GTAC 3 cut(s) 430, 436, 764
SaqAI TTAA 2 cut(s) 363, 411
SatI GCNGC 3 cut(s) 585, 627, 792
Sau3AI GATC 6 cut(s) 158, 315, 594, 604, 646, 749
Sau96I GGNCC 3 cut(s) 179, 837, 855
SchI GAGTC 2 cut(s) 25, 887
ScrFI CCNGG 5 cut(s) 293, 534, 787, 788, 914
SduI GDGCHC 3 cut(s) 24, 169, 234
SfaNI GCATC 3 cut(s) 528, 746, 872
SfoI GGCGCC 1 cut(s) 899
SfuI TTCGAA 1 cut(s) 922
SinI GGWCC 1 cut(s) 179
SmaI CCCGGG 1 cut(s) 788
SmlI CTYRAG 3 cut(s) 26, 269, 519
SmoI CTYRAG 3 cut(s) 26, 269, 519
SrfI GCCCGGGC 1 cut(s) 788
Sse9I AATT 2 cut(s) 121, 215
SspDI GGCGCC 1 cut(s) 897
SspI AATATT 1 cut(s) 571
SspMI CTAG 2 cut(s) 441, 657
StyD4I CCNGG 5 cut(s) 291, 532, 785, 786, 912
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 2 cut(s) 325, 471
TaiI ACGT 3 cut(s) 279, 420, 699
TaqI TCGA 1 cut(s) 922
TasI AATT 2 cut(s) 121, 215
TfiI GAWTC 4 cut(s) 87, 142, 284, 944
Tru1I TTAA 2 cut(s) 363, 411
Tru9I TTAA 2 cut(s) 363, 411
TscAI CASTG 4 cut(s) 181, 190, 346, 707
TseFI GTSAC 2 cut(s) 172, 344
TseI GCWGC 3 cut(s) 584, 626, 791
Tsp45I GTSAC 2 cut(s) 172, 344
TspDTI ATGAA 3 cut(s) 440, 468, 828
TspMI CCCGGG 1 cut(s) 786
TspRI CASTG 4 cut(s) 181, 190, 346, 707
VpaK11BI GGWCC 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmaI CCCGGG 1 cut(s) 786
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 2 cut(s) 441, 657
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.