AT1G69050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0022122
Physical Location & Seq
Forward (+)
25961604 .. 25962435
832 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69050.1

Sequence Viewer

Length: 285 bp
ATGGAGGATTCAGGACGTAAAGGAGATCCATTTCCAGGTTTTGAGATGAGAGTTCACAACGACGATTGCGTTTTCCGACGATCTCTTAGCTGCCGGCTTCAGAGAAGAGCTCCTTGTCCTCTTCTCTTACCACCAAGACCTCCTCCTTCAGCGGAGGCTCCTTCTACTACGACAGGTGTTTCTACGTCTACGTTTTGTCAAAACGGCACAGATCCGATCCCTCTCTTGTCTCCTCTCGTCCTTCCTTCGATGCTTCAACCTAATCCAACCACCACCTCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.23

Weight (kDa)

7.71

Isoelectric Point (pI)

71.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69050
prunus_persica Prupe.1G293000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0437411
rosa_rugosa Rorug04G0301300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 188
AciI CCGC 1 cut(s) 152
AclWI GGATC 3 cut(s) 20, 206, 211
AcuI CTGAAG 2 cut(s) 83, 132
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 257
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 90, 110
AluI AGCT 2 cut(s) 90, 110
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 3 cut(s) 20, 206, 211
ApeKI GCWGC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 234
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 93
BseBI CCWGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 35
BseRI GAGGAG 2 cut(s) 132, 222
BseXI GCAGC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 4 cut(s) 25, 80, 211, 216
BspACI CCGC 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 159
BspPI GGATC 3 cut(s) 20, 206, 211
BspQI GCTCTTC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssMI GATC 4 cut(s) 25, 80, 211, 216
Bst2UI CCWGG 1 cut(s) 36
Bst6I CTCTTC 2 cut(s) 100, 126
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 86
BstKTI GATC 4 cut(s) 28, 83, 214, 219
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 4 cut(s) 25, 80, 211, 216
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 25, 211
BstYI RGATCY 2 cut(s) 25, 211
Cac8I GCNNGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 93
CviJI RGCY 4 cut(s) 90, 97, 110, 158
CviKI_1 RGCY 4 cut(s) 90, 97, 110, 158
DdeI CTNAG 1 cut(s) 86
DpnI GATC 4 cut(s) 27, 82, 213, 218
DpnII GATC 4 cut(s) 25, 80, 211, 216
Eam1104I CTCTTC 2 cut(s) 100, 126
EarI CTCTTC 2 cut(s) 100, 126
Ecl136II GAGCTC 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 110
Eco57I CTGAAG 2 cut(s) 83, 132
EcoICRI GAGCTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 112
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
HapII CCGG 1 cut(s) 94
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 55, 189
Hpy188I TCNGA 3 cut(s) 77, 102, 216
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 55, 189
Hpy99I CGWCG 2 cut(s) 65, 81
HpyAV CCTTC 4 cut(s) 156, 171, 251, 255
HpyCH4IV ACGT 3 cut(s) 16, 185, 191
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 3 cut(s) 16, 185, 191
KroI GCCGGC 1 cut(s) 93
KroNI GCCGGC 1 cut(s) 95
Kzo9I GATC 4 cut(s) 25, 80, 211, 216
LguI GCTCTTC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 115, 163
LpnPI CCDG 4 cut(s) 21, 48, 107, 159
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 240
MaeII ACGT 3 cut(s) 16, 185, 191
MalI GATC 4 cut(s) 27, 82, 213, 218
MboI GATC 4 cut(s) 25, 80, 211, 216
MboII GAAGA 2 cut(s) 113, 117
MflI RGATCY 2 cut(s) 25, 211
MhlI GDGCHC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 6 cut(s) 129, 148, 150, 153, 231, 243
MroNI GCCGGC 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
NaeI GCCGGC 1 cut(s) 95
NdeII GATC 4 cut(s) 25, 80, 211, 216
NgoMIV GCCGGC 1 cut(s) 93
NlaIV GGNNCC 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PdiI GCCGGC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 159
PsuI RGATCY 2 cut(s) 25, 211
SacI GAGCTC 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 100
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 4 cut(s) 25, 80, 211, 216
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 112
SfaNI GCATC 1 cut(s) 240
SgeI CNNG 9 cut(s) 24, 47, 48, 106, 126, 147, 186, 238, 248
SsiI CCGC 1 cut(s) 152
SstI GAGCTC 1 cut(s) 112
StyD4I CCNGG 1 cut(s) 34
TaiI ACGT 3 cut(s) 19, 188, 194
TaqI TCGA 1 cut(s) 248
TfiI GAWTC 1 cut(s) 8
TseI GCWGC 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.