Prupe.1G293000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0022122
Physical Location & Seq
Reverse (-)
29079310 .. 29079582
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G293000.1

Sequence Viewer

Length: 273 bp
ATGGAGGACAGTGCTGGTGCTGAGTTTCCAGGCTTCCAAACTTGTGCTCACAAAAGTGACACCAATATTTTCAGAAGGCATTTGAGTCATCGGCTGCAAAGACGAGCTCCTTGTCCTCTTCAGCTAAACCCTAATAACAATGTCTCTTCGGGTTGCAGCGGTATCCAGAACTCGGTGGGGAGCAGCTCAAATTCTTCTTCTTCTTCATTGAATTCCTTCTATCAGAGCAAAGATCCCATTCCCCTACTCTCCCCTCTAGTGTTGCTGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.7

Weight (kDa)

8.63

Isoelectric Point (pI)

72.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69050
prunus_persica Prupe.1G293000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0437411
rosa_rugosa Rorug04G0301300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 2 cut(s) 190, 211
AcuI CTGAAG 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 28
AleI CACNNNNGTG 1 cut(s) 54
AluBI AGCT 3 cut(s) 107, 124, 186
AluI AGCT 3 cut(s) 107, 124, 186
Alw21I GWGCWC 2 cut(s) 49, 109
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 1 cut(s) 227
ApeKI GCWGC 4 cut(s) 94, 156, 183, 265
ApoI RAATTY 2 cut(s) 190, 211
Asp700I GAANNNNTTC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 109
Bbv12I GWGCWC 2 cut(s) 49, 109
BbvI GCAGC 4 cut(s) 81, 168, 195, 252
BciT130I CCWGG 1 cut(s) 30
BciVI GTATCC 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 257
BfuI GTATCC 1 cut(s) 173
BisI GCNGC 4 cut(s) 95, 157, 184, 266
BlsI GCNGC 4 cut(s) 96, 158, 185, 267
Bme1390I CCNGG 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 12
BseXI GCAGC 4 cut(s) 81, 168, 195, 252
BsiHKAI GWGCWC 2 cut(s) 49, 109
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 49, 109
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 227
BssMI GATC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 2 cut(s) 123, 151
BstDEI CTNAG 1 cut(s) 21
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 4 cut(s) 81, 168, 195, 252
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuI GTATCC 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 16
CviJI RGCY 5 cut(s) 33, 94, 107, 124, 186
CviKI_1 RGCY 5 cut(s) 33, 94, 107, 124, 186
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 123, 151
EarI CTCTTC 2 cut(s) 123, 151
Ecl136II GAGCTC 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 109
Fnu4HI GCNGC 4 cut(s) 95, 157, 184, 266
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 4 cut(s) 95, 157, 184, 266
FspBI CTAG 1 cut(s) 257
GluI GCNGC 4 cut(s) 95, 157, 184, 266
HinfI GANTC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 74, 225
Hpy188III TCNNGA 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 69, 226
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 97, 156
HpyF3I CTNAG 1 cut(s) 21
Kzo9I GATC 1 cut(s) 232
LmnI GCTCC 2 cut(s) 112, 180
LpnPI CCDG 3 cut(s) 15, 42, 179
Lsp1109I GCAGC 4 cut(s) 81, 168, 195, 252
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 6 cut(s) 110, 138, 186, 189, 192, 195
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 49, 109
MluCI AATT 2 cut(s) 190, 211
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 2 cut(s) 126, 264
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 1 cut(s) 271
MslI CAYNNNNRTG 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
NdeII GATC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 56
OliI CACNNNNGTG 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 215
PkrI GCNGC 4 cut(s) 96, 158, 185, 267
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 54
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 4 cut(s) 95, 157, 184, 266
Sau3AI GATC 1 cut(s) 232
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 49, 109
SetI ASST 3 cut(s) 109, 126, 188
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 2 cut(s) 190, 211
SsiI CCGC 1 cut(s) 159
SspI AATATT 1 cut(s) 67
SspMI CTAG 1 cut(s) 257
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 11
TasI AATT 2 cut(s) 190, 211
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 4 cut(s) 94, 156, 183, 265
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 1 cut(s) 16
XapI RAATTY 2 cut(s) 190, 211
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.