Rorug04G0301300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0022122
Physical Location & Seq
Reverse (-)
47617785 .. 47619178
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0301300.1

Sequence Viewer

Length: 894 bp
ATGACAGCTGTGGCACTGTCTCAACAGGGTTCCTTAGCCCCTGATGCAAGCAAAGGAAAGAGCTCTGCTGCTTCAATATTTGCAATTCTTGACCGGAAATCAAAAATAGATGCTAGTGATAACTCCGGAACAACTATAGAAAATTTGAAGGGAGAAATTGAATTTTACCATGTTAGTTTCAAGTATCCAAATAGACCTAATGTACCAATCTTCCAGGATCTGTGCTTGACCATTCACTATGGGCAGACAGTTGCTCTGGTTGGAGAAAGCGGAAGTGGGAAATCAACAGTGATCTCATTGCTGCAGAGATTTTATGATCCTGATTCAGGTCACATTACATTAGATGGTACTGAAATGCAAACATTACAGCTGAAGTGGTTGAGGCAGCAAATGGGGCTGGTGAGCCAGGAGCCTCTGCTTTTTAATGACACTATCAGAGCCAACATTGCATATGGAAAGGAAGGGAGTGCAACCGAGGCTGAAATTATAGCCGCAGCAGAATTGGCAAATGCTCACAAGTTCATTAGTAGTTTACAACAGGGCTATGATACAATAGTAGGTGAGCGAGGGGTCCAACTTTCTGGCGGACAGAAGCAAAGGGTAGCTATTGCAAGAGCTATAATGAAGGCACCGAAGATATTACTACTAGATGAAGCCACCAGTGCTCTTGATGCTGAATCCGAAAGAGTGGTTCAAGATGCACTGGATAGAGTTATGGTGGATCGAACTACAGTGGTGGTTGCCCATCGGCTATCCACAATTAAGGGTGCAGATTTAATAGCAGTGGTGAAAAATGGAGTCATTGCAGAGAAAGGAAAGCATGAAACTCTGATCGGTATCAAGGGTGGAACTTATGCTTCTTTGGTAGCACTACATGCAGGTGCCTCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

31.72

Weight (kDa)

6.39

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 72 - 221 3.2e-36 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69050
prunus_persica Prupe.1G293000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0437411
rosa_rugosa Rorug04G0301300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 869
Acc36I ACCTGC 1 cut(s) 869
AccB1I GGYRCC 2 cut(s) 628, 881
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 3 cut(s) 270, 492, 585
AclWI GGATC 3 cut(s) 225, 311, 729
AcsI RAATTY 2 cut(s) 142, 161
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 2 cut(s) 204, 349
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 5 cut(s) 75, 148, 161, 181, 695
AjnI CCWGG 2 cut(s) 213, 405
AluBI AGCT 5 cut(s) 8, 63, 370, 605, 617
AluI AGCT 5 cut(s) 8, 63, 370, 605, 617
Alw21I GWGCWC 2 cut(s) 65, 667
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 3 cut(s) 225, 311, 729
AlwNI CAGNNNCTG 1 cut(s) 220
Aor13HI TCCGGA 1 cut(s) 125
ApeKI GCWGC 4 cut(s) 68, 301, 385, 494
ApoI RAATTY 2 cut(s) 142, 161
AspS9I GGNCC 1 cut(s) 571
AsuHPI GGTGA 3 cut(s) 412, 572, 799
AvaII GGWCC 1 cut(s) 571
BaeI ACNNNNGTAYC 2 cut(s) 540, 573
BanI GGYRCC 2 cut(s) 628, 881
BanII GRGCYC 1 cut(s) 65
Bbv12I GWGCWC 2 cut(s) 65, 667
BbvI GCAGC 4 cut(s) 55, 288, 397, 506
BccI CCATC 2 cut(s) 338, 753
BciT130I CCWGG 2 cut(s) 215, 407
BciVI GTATCC 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 2 cut(s) 114, 647
BfmI CTRYAG 3 cut(s) 135, 302, 729
BfuAI ACCTGC 1 cut(s) 869
BfuI GTATCC 1 cut(s) 195
BisI GCNGC 5 cut(s) 69, 302, 386, 492, 495
BlsI GCNGC 5 cut(s) 70, 303, 387, 493, 496
Bme1390I CCNGG 2 cut(s) 215, 407
Bme18I GGWCC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 571
BmiI GGNNCC 5 cut(s) 31, 411, 572, 630, 883
BmrFI CCNGG 2 cut(s) 215, 407
BmsI GCATC 4 cut(s) 34, 100, 661, 688
Bpu10I CCTNAGC 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 836
BsaJI CCNNGG 1 cut(s) 474
BsaWI WCCGGW 2 cut(s) 93, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 660, 708
Bse3DI GCAATG 3 cut(s) 296, 444, 801
Bse8I GATNNNNATC 1 cut(s) 836
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 2 cut(s) 215, 407
BseDI CCNNGG 1 cut(s) 474
BseJI GATNNNNATC 1 cut(s) 836
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 3 cut(s) 296, 444, 801
BseNI ACTGG 2 cut(s) 660, 708
BseXI GCAGC 4 cut(s) 55, 288, 397, 506
BsgI GTGCAG 1 cut(s) 789
BshNI GGYRCC 2 cut(s) 628, 881
BsiHKAI GWGCWC 2 cut(s) 65, 667
BsiSI CCGG 2 cut(s) 94, 126
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 24
Bsp1286I GDGCHC 2 cut(s) 65, 667
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 5 cut(s) 217, 291, 316, 721, 831
BspACI CCGC 3 cut(s) 270, 492, 585
BspEI TCCGGA 1 cut(s) 125
BspLI GGNNCC 5 cut(s) 31, 411, 572, 630, 883
BspMAI CTGCAG 1 cut(s) 306
BspMI ACCTGC 1 cut(s) 869
BspPI GGATC 3 cut(s) 225, 311, 729
BspT107I GGYRCC 2 cut(s) 628, 881
BsrDI GCAATG 3 cut(s) 296, 444, 801
BsrI ACTGG 2 cut(s) 660, 708
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 5 cut(s) 217, 291, 316, 721, 831
Bst2UI CCWGG 2 cut(s) 215, 407
Bst4CI ACNGT 4 cut(s) 18, 250, 289, 733
BstAPI GCANNNNNTGC 1 cut(s) 875
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 34, 891
BstENI CCTNNNNNAGG 1 cut(s) 324
BstKTI GATC 5 cut(s) 220, 294, 319, 724, 834
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 5 cut(s) 217, 291, 316, 721, 831
BstMWI GCNNNNNNNGC 8 cut(s) 44, 394, 446, 476, 503, 662, 671, 875
BstNI CCWGG 2 cut(s) 215, 407
BstNSI RCATGY 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 213, 405
BstSFI CTRYAG 3 cut(s) 135, 302, 729
BstV1I GCAGC 4 cut(s) 55, 288, 397, 506
BstX2I RGATCY 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 581
BstYI RGATCY 1 cut(s) 217
BsuI GTATCC 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 789
BtsIMutI CAGTG 6 cut(s) 14, 294, 667, 701, 738, 789
BveI ACCTGC 1 cut(s) 869
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 571
Csp6I GTAC 2 cut(s) 203, 348
CviAII CATG 3 cut(s) 170, 821, 875
CviQI GTAC 2 cut(s) 203, 348
DdeI CTNAG 2 cut(s) 34, 891
DpnI GATC 5 cut(s) 219, 293, 318, 723, 833
DpnII GATC 5 cut(s) 217, 291, 316, 721, 831
EciI GGCGGA 1 cut(s) 600
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 571
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 213, 405
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 3 cut(s) 173, 824, 878
FatI CATG 3 cut(s) 169, 820, 874
FauNDI CATATG 1 cut(s) 451
Fnu4HI GCNGC 5 cut(s) 69, 302, 386, 492, 495
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 5 cut(s) 69, 302, 386, 492, 495
FspBI CTAG 2 cut(s) 114, 647
GluI GCNGC 5 cut(s) 69, 302, 386, 492, 495
HapII CCGG 2 cut(s) 94, 126
Hin1II CATG 3 cut(s) 173, 824, 878
HinfI GANTC 3 cut(s) 323, 677, 798
HpaII CCGG 2 cut(s) 94, 126
HphI GGTGA 3 cut(s) 412, 572, 799
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 3 cut(s) 437, 682, 831
Hpy188III TCNNGA 5 cut(s) 89, 126, 320, 668, 695
Hpy8I GTNNAC 1 cut(s) 533
HpyAV CCTTC 3 cut(s) 142, 455, 619
HpyCH4III ACNGT 4 cut(s) 18, 250, 289, 733
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 394, 446, 476, 503, 662, 671, 875
HpyF3I CTNAG 2 cut(s) 34, 891
Hsp92II CATG 3 cut(s) 173, 824, 878
Kpn2I TCCGGA 1 cut(s) 125
Kzo9I GATC 5 cut(s) 217, 291, 316, 721, 831
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 4 cut(s) 55, 288, 397, 506
LweI GCATC 4 cut(s) 34, 100, 661, 688
MaeI CTAG 2 cut(s) 114, 647
MaeIII GTNAC 1 cut(s) 329
MalI GATC 5 cut(s) 219, 293, 318, 723, 833
MboI GATC 5 cut(s) 217, 291, 316, 721, 831
MboII GAAGA 2 cut(s) 202, 646
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 65, 667
MluCI AATT 7 cut(s) 84, 142, 156, 161, 483, 500, 759
MlyI GAGTC 1 cut(s) 807
MmeI TCCRAC 2 cut(s) 241, 598
MnlI CCTC 4 cut(s) 375, 423, 469, 560
MroI TCCGGA 1 cut(s) 125
MseI TTAA 3 cut(s) 423, 762, 776
MslI CAYNNNNRTG 1 cut(s) 879
MspA1I CMGCKG 2 cut(s) 8, 370
MspI CCGG 2 cut(s) 94, 126
MspR9I CCNGG 2 cut(s) 215, 407
MvaI CCWGG 2 cut(s) 215, 407
MwoI GCNNNNNNNGC 8 cut(s) 44, 394, 446, 476, 503, 662, 671, 875
NdeI CATATG 1 cut(s) 451
NdeII GATC 5 cut(s) 217, 291, 316, 721, 831
NlaIII CATG 3 cut(s) 173, 824, 878
NlaIV GGNNCC 5 cut(s) 31, 411, 572, 630, 883
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 1 cut(s) 878
PaqCI CACCTGC 1 cut(s) 869
PfeI GAWTC 2 cut(s) 323, 677
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 5 cut(s) 70, 303, 387, 493, 496
PleI GAGTC 1 cut(s) 806
PpsI GAGTC 1 cut(s) 806
Psp124BI GAGCTC 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 213, 405
PspGI CCWGG 2 cut(s) 213, 405
PspN4I GGNNCC 5 cut(s) 31, 411, 572, 630, 883
PspPI GGNCC 1 cut(s) 571
PstI CTGCAG 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 220
PsuI RGATCY 1 cut(s) 217
PvuII CAGCTG 2 cut(s) 8, 370
RsaI GTAC 2 cut(s) 204, 349
RsaNI GTAC 2 cut(s) 203, 348
RseI CAYNNNNRTG 1 cut(s) 879
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 3 cut(s) 423, 762, 776
SatI GCNGC 5 cut(s) 69, 302, 386, 492, 495
Sau3AI GATC 5 cut(s) 217, 291, 316, 721, 831
Sau96I GGNCC 1 cut(s) 571
SchI GAGTC 1 cut(s) 807
ScrFI CCNGG 2 cut(s) 215, 407
SduI GDGCHC 2 cut(s) 65, 667
SetI ASST 9 cut(s) 10, 65, 199, 331, 372, 562, 607, 619, 883
SfaNI GCATC 4 cut(s) 34, 100, 661, 688
SfcI CTRYAG 3 cut(s) 135, 302, 729
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 879
Sse9I AATT 7 cut(s) 84, 142, 156, 161, 483, 500, 759
SsiI CCGC 3 cut(s) 270, 492, 585
SspI AATATT 1 cut(s) 78
SspMI CTAG 2 cut(s) 114, 647
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 213, 405
TaaI ACNGT 4 cut(s) 18, 250, 289, 733
TaqI TCGA 1 cut(s) 724
TasI AATT 7 cut(s) 84, 142, 156, 161, 483, 500, 759
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 2 cut(s) 323, 677
Tru1I TTAA 3 cut(s) 423, 762, 776
Tru9I TTAA 3 cut(s) 423, 762, 776
TscAI CASTG 6 cut(s) 21, 294, 667, 708, 738, 789
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 4 cut(s) 68, 301, 385, 494
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 4 cut(s) 511, 638, 666, 837
TspRI CASTG 6 cut(s) 21, 294, 667, 708, 738, 789
VpaK11BI GGWCC 1 cut(s) 571
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 2 cut(s) 142, 161
XceI RCATGY 1 cut(s) 878
XspI CTAG 2 cut(s) 114, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.