RchiOBHm_Chr4g0437411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0022122
Physical Location & Seq
Forward (+)
60519499 .. 60520074
576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40567

Sequence Viewer

Length: 294 bp
ATGGAAGACACAGGAACTGAGTTTCCAGGCTTCCAAACTTGTGCACACAAGGATGACAGTATTTTCAGAAGGCGGTTGAGCAGGTTGCAACGACGAGCTCCTTATCCTCTTCAGCTGATTAAGCAGCCTAATAATAACAATGCCAGCTCTTCTGGTTGCACCAGCAGCTCGAATAATTCTTCTTCTTCTTCTTTGAATTCATTCATCTATCAGAGTAAAGATCCTATCCCACTACTCTCCCCTCTAGTATTGCCTTCTTTGCTTGAATCTGCCTACATTCAACAAGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.76

Weight (kDa)

8.74

Isoelectric Point (pI)

84.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69050
prunus_persica Prupe.1G293000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0437411
rosa_rugosa Rorug04G0301300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 72
AciI CCGC 1 cut(s) 73
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 196, 266, 281
AjnI CCWGG 1 cut(s) 25
AloI GAACNNNNNNTCC 2 cut(s) 7, 39
AluBI AGCT 4 cut(s) 98, 115, 147, 168
AluI AGCT 4 cut(s) 98, 115, 147, 168
Alw21I GWGCWC 2 cut(s) 46, 100
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 215
AlwNI CAGNNNCTG 1 cut(s) 17
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 124, 165
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 46, 100
BbvI GCAGC 2 cut(s) 136, 177
BciT130I CCWGG 1 cut(s) 27
BfaI CTAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 72
BisI GCNGC 2 cut(s) 125, 166
BlsI GCNGC 2 cut(s) 126, 167
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 12
BseBI CCWGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 9
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 2 cut(s) 136, 177
BsiHKAI GWGCWC 2 cut(s) 46, 100
Bsp1286I GDGCHC 2 cut(s) 46, 100
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 72
BspPI GGATC 1 cut(s) 215
BspQI GCTCTTC 1 cut(s) 154
BssMI GATC 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 114, 154
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 121, 165, 259
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 136, 177
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BtsCI GGATG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 17
CviJI RGCY 6 cut(s) 30, 98, 115, 127, 147, 168
CviKI_1 RGCY 6 cut(s) 30, 98, 115, 127, 147, 168
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 2 cut(s) 114, 154
EarI CTCTTC 2 cut(s) 114, 154
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 125, 166
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 125, 166
FspBI CTAG 1 cut(s) 245
GluI GCNGC 2 cut(s) 125, 166
HinfI GANTC 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 68, 213
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 96
HpyAV CCTTC 2 cut(s) 63, 264
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 44, 88, 159
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 165, 259
HpyF3I CTNAG 1 cut(s) 18
Kzo9I GATC 1 cut(s) 220
LguI GCTCTTC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 12, 39, 67, 138, 157, 175
Lsp1109I GCAGC 2 cut(s) 136, 177
MaeI CTAG 1 cut(s) 245
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 7 cut(s) 17, 101, 141, 171, 174, 177, 180
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 46, 100
MluCI AATT 3 cut(s) 175, 196, 289
MnlI CCTC 2 cut(s) 117, 252
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 2 cut(s) 120, 292
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 121, 165, 259
NdeII GATC 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 2 cut(s) 126, 167
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 17
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 154
SaqAI TTAA 2 cut(s) 120, 292
SatI GCNGC 2 cut(s) 125, 166
Sau3AI GATC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 2 cut(s) 46, 100
SetI ASST 5 cut(s) 86, 100, 117, 149, 170
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 3 cut(s) 175, 196, 289
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 170
TasI AATT 3 cut(s) 175, 196, 289
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 120, 292
Tru9I TTAA 2 cut(s) 120, 292
TseI GCWGC 2 cut(s) 124, 165
TspDTI ATGAA 2 cut(s) 189, 193
VneI GTGCAC 1 cut(s) 42
XapI RAATTY 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.