Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020164

Physical Location & Seq

Genomic Coordinates Forward (+)

26122080 .. 26123514

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAAGTAACTTCCCAATCTACCCTCCCTCCAGGGTTCAGATTTCATCCTACCGACGAAGAACTCATCGTTTACTATCTTCGAAACCAGACCATGTCTAAACCATGCCCTGTCTCCATCATCCCAGAAGTTGATATCTACAAATTCGACCCATGGCAATTACCCGAGAAAACAGAGTTTGGAGAAAATGAGTGGTATTTCTTCAGCCCTAGAGAAAGAAAATATCCAAACGGAGTCAGACCAAACCGGGCAGCTGTTTCCGGTTATTGGAAAGCAACCGGTACAGACAAAGCCATTCACAGCGGTTCAAGTAACGTAGGTGTCAAGAAAGCTCTAGTCTTCTACAAAGGTAGACCTCCTAAAGGAATCAAAACTGACTGGATCATGCATGAGTATCGTCTCCATGATTCACGTAAAGCATCAACGAAACGTAACGGTTCCATGAGGTTAGATGAATGGGTACTGTGTAGGATATACAAGAAGAGAGGAGCAAGTAAGCTTCTGAATGAGCAAGAGGGTTTCATGGACGAAGTACTAATGGAGGATGAGACAAAAGTTGTAGTTAACGAAGCAGAGAGAAGAACTGAAGAAGAGATAATGATGATGACGTCGATGAAACTTCCAAGGACGTGTTCGCTGGCTCATTTGTTGGAAATGGATTACATGGGACCCGTCTCTCACATTGATAATTTTAGTCAGTTCGATCATCTTCATCAACCTGATTCGGAGTCTAGTTGGTTCGGGGACCTTCAGTTTAACCAAGACGAGATCTTAAACCATCATCGTCAAGCGATGTTTAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

268

Amino Acids

31.43

Weight (kDa)

6.38

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 134	6.7e-52	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69490
malus_domestica	MD13G1069200.v1.1 MD16G1069500.v1.1
prunus_persica	Prupe.1G277500_v2.0.a1
pyrus_communis	pycom13g06200 pycom16g06070

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	352
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	3 cut(s)	187, 606, 734
AcyI	GRCGYC	1 cut(s)	608
AfaI	GTAC	3 cut(s)	283, 462, 534
AfiI	CCNNNNNNNGG	2 cut(s)	267, 362
AflIII	ACRYGT	1 cut(s)	629
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	309
AjiI	CACGTC	1 cut(s)	630
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	616, 648
AluBI	AGCT	3 cut(s)	254, 332, 499
AluI	AGCT	3 cut(s)	254, 332, 499
Alw26I	GTCTC	4 cut(s)	118, 404, 542, 679
AlwI	GGATC	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	143
AsiGI	ACCGGT	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	668, 745
AsuC2I	CCSGG	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	2 cut(s)	668, 745
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	125, 786
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	4 cut(s)	118, 404, 542, 679
BfaI	CTAG	3 cut(s)	210, 335, 732
BglII	AGATCT	1 cut(s)	768
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmcAI	AGTACT	1 cut(s)	534
Bme1390I	CCNGG	2 cut(s)	33, 248
Bme18I	GGWCC	2 cut(s)	668, 745
BmeT110I	CYCGRG	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	630
BmgT120I	GGNCC	2 cut(s)	668, 745
BmiI	GGNNCC	4 cut(s)	439, 669, 670, 746
BmrFI	CCNGG	2 cut(s)	33, 248
BmsI	GCATC	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	32, 152, 623
BsaWI	WCCGGW	2 cut(s)	260, 278
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 362
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	3 cut(s)	32, 152, 623
BseGI	GGATG	3 cut(s)	46, 120, 550
BseLI	CCNNNNNNNGG	2 cut(s)	267, 362
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	263
BshTI	ACCGGT	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	3 cut(s)	247, 261, 279
BslFI	GGGAC	2 cut(s)	681, 758
BslI	CCNNNNNNNGG	2 cut(s)	267, 362
BsmAI	GTCTC	4 cut(s)	118, 404, 542, 679
BsmBI	CGTCTC	2 cut(s)	404, 679
BsmFI	GGGAC	2 cut(s)	681, 758
BsoBI	CYCGRG	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	381, 703, 768
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	1 cut(s)	303
BspLI	GGNNCC	4 cut(s)	439, 669, 670, 746
BspPI	GGATC	1 cut(s)	389
BspT104I	TTCGAA	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	32, 152, 623
BssMI	GATC	3 cut(s)	381, 703, 768
BssNI	GRCGYC	1 cut(s)	608
BssT1I	CCWWGG	2 cut(s)	152, 623
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	437, 465
Bst6I	CTCTTC	2 cut(s)	476, 585
BstACI	GRCGYC	1 cut(s)	608
BstBAI	YACGTR	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	639
BstDSI	CCRYGG	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	46, 120, 550
BstKTI	GATC	3 cut(s)	384, 706, 771
BstMAI	GTCTC	4 cut(s)	118, 404, 542, 679
BstMBI	GATC	3 cut(s)	381, 703, 768
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 246
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	768
BtgI	CCRYGG	1 cut(s)	152
BtrI	CACGTC	1 cut(s)	630
BtsCI	GGATG	3 cut(s)	46, 120, 550
Cac8I	GCNNGC	1 cut(s)	639
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	668, 745
Csp6I	GTAC	3 cut(s)	282, 461, 533
CspAI	ACCGGT	1 cut(s)	278
CviAII	CATG	9 cut(s)	94, 105, 153, 385, 389, 404, 442, 523, 664
CviJI	RGCY	6 cut(s)	207, 254, 293, 332, 499, 641
CviKI_1	RGCY	6 cut(s)	207, 254, 293, 332, 499, 641
CviQI	GTAC	3 cut(s)	282, 461, 533
DpnI	GATC	3 cut(s)	383, 705, 770
DpnII	GATC	3 cut(s)	381, 703, 768
Eam1104I	CTCTTC	2 cut(s)	476, 585
EarI	CTCTTC	2 cut(s)	476, 585
Eco130I	CCWWGG	2 cut(s)	152, 623
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	668, 745
Eco57I	CTGAAG	3 cut(s)	187, 606, 734
Eco88I	CYCGRG	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	2 cut(s)	668, 745
EcoRII	CCWGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	152, 623
EcoT22I	ATGCAT	1 cut(s)	390
ErhI	CCWWGG	2 cut(s)	152, 623
Esp3I	CGTCTC	2 cut(s)	404, 679
FaeI	CATG	9 cut(s)	97, 108, 156, 388, 392, 407, 445, 526, 667
FaqI	GGGAC	2 cut(s)	681, 758
FatI	CATG	9 cut(s)	93, 104, 152, 384, 388, 403, 441, 522, 663
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	3 cut(s)	33, 107, 557
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	3 cut(s)	210, 335, 732
GluI	GCNGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	15
HapII	CCGG	3 cut(s)	247, 261, 279
Hin1I	GRCGYC	1 cut(s)	608
Hin1II	CATG	9 cut(s)	97, 108, 156, 388, 392, 407, 445, 526, 667
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	5 cut(s)	234, 366, 407, 722, 728
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	3 cut(s)	247, 261, 279
Hpy166II	GTNNAC	3 cut(s)	73, 353, 565
Hpy188I	TCNGA	4 cut(s)	41, 239, 504, 727
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	3 cut(s)	73, 353, 565
Hpy99I	CGWCG	2 cut(s)	59, 613
HpyAV	CCTTC	1 cut(s)	758
HpyCH4III	ACNGT	2 cut(s)	437, 465
HpyCH4IV	ACGT	5 cut(s)	315, 412, 430, 608, 629
HpyCH4V	TGCA	1 cut(s)	388
HpySE526I	ACGT	5 cut(s)	315, 412, 430, 608, 629
Hsp92I	GRCGYC	1 cut(s)	608
Hsp92II	CATG	9 cut(s)	97, 108, 156, 388, 392, 407, 445, 526, 667
KflI	GGGWCCC	1 cut(s)	668
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	3 cut(s)	381, 703, 768
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	3 cut(s)	210, 335, 732
MaeII	ACGT	5 cut(s)	315, 412, 430, 608, 629
MaeIII	GTNAC	3 cut(s)	7, 311, 431
MalI	GATC	3 cut(s)	383, 705, 770
MboI	GATC	3 cut(s)	381, 703, 768
MboII	GAAGA	9 cut(s)	71, 71, 193, 331, 493, 591, 599, 602, 701
MflI	RGATCY	1 cut(s)	768
MluCI	AATT	3 cut(s)	143, 158, 688
MlyI	GAGTC	2 cut(s)	243, 737
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	7 cut(s)	35, 39, 366, 438, 479, 508, 535
Mph1103I	ATGCAT	1 cut(s)	390
MseI	TTAA	4 cut(s)	564, 756, 773, 798
MspA1I	CMGCKG	2 cut(s)	254, 303
MspI	CCGG	3 cut(s)	247, 261, 279
MspR9I	CCNGG	2 cut(s)	33, 248
MvaI	CCWGG	1 cut(s)	33
NciI	CCSGG	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	3 cut(s)	381, 703, 768
NlaIII	CATG	9 cut(s)	97, 108, 156, 388, 392, 407, 445, 526, 667
NlaIV	GGNNCC	4 cut(s)	439, 669, 670, 746
NsiI	ATGCAT	1 cut(s)	390
NspV	TTCGAA	1 cut(s)	82
PfeI	GAWTC	3 cut(s)	366, 407, 722
PflFI	GACNNNGTC	1 cut(s)	94
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	2 cut(s)	242, 736
PpsI	GAGTC	2 cut(s)	242, 736
Ppu21I	YACGTR	1 cut(s)	413
PpuMI	RGGWCCY	2 cut(s)	668, 745
Psp5II	RGGWCCY	2 cut(s)	668, 745
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	4 cut(s)	439, 669, 670, 746
PspPI	GGNCC	2 cut(s)	668, 745
PspPPI	RGGWCCY	2 cut(s)	668, 745
PsuI	RGATCY	1 cut(s)	768
PsyI	GACNNNGTC	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	3 cut(s)	283, 462, 534
RsaNI	GTAC	3 cut(s)	282, 461, 533
SaqAI	TTAA	4 cut(s)	564, 756, 773, 798
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	381, 703, 768
Sau96I	GGNCC	2 cut(s)	668, 745
ScaI	AGTACT	1 cut(s)	534
SchI	GAGTC	2 cut(s)	243, 737
ScrFI	CCNGG	2 cut(s)	33, 248
SfaNI	GCATC	1 cut(s)	428
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	2 cut(s)	668, 745
Sse9I	AATT	3 cut(s)	143, 158, 688
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	3 cut(s)	210, 335, 732
StyD4I	CCNGG	2 cut(s)	31, 246
StyI	CCWWGG	2 cut(s)	152, 623
TaaI	ACNGT	2 cut(s)	437, 465
TaiI	ACGT	5 cut(s)	318, 415, 433, 611, 632
TaqI	TCGA	4 cut(s)	82, 147, 611, 702
TasI	AATT	3 cut(s)	143, 158, 688
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	3 cut(s)	366, 407, 722
Tru1I	TTAA	4 cut(s)	564, 756, 773, 798
Tru9I	TTAA	4 cut(s)	564, 756, 773, 798
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	5 cut(s)	35, 468, 511, 629, 701
TspGWI	ACGGA	1 cut(s)	246
Tth111I	GACNNNGTC	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	668, 745
XagI	CCTNNNNNAGG	1 cut(s)	360
XapI	RAATTY	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	352
XspI	CTAG	3 cut(s)	210, 335, 732
ZraI	GACGTC	1 cut(s)	609
ZrmI	AGTACT	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.