Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0020164

Physical Location & Seq

Genomic Coordinates Reverse (-)

28214649 .. 28216118

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G277500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGGCCAAACACAGCTCTGAGCTTCCTCCTGGTTTTAGATTCCACCCAACTGATGAGGAACTCATCATGTTTTACCTCAAAAACCAGGCCACCTCAAGGCCATGCCCTGTGTCCATAATCCCAGAAGTTGATCTTTACAAGTTTGATCCATGGCAGTTACCTGAGAAAGCAGAGTTTGGAGAAAATGAATGGTATTTCTTTACCCCAAGGGACAGGAAGTACCCAAATGGAGTAAGACCTAACAGAGCCACCGTCTCGGGTTACTGGAAAGCCACAGGTACAGACAAGGCAATTTACAGTGGGACAAAGTATGTGGGGGTGAAGAAAGCTCTTGTGTTTTACCAGGGCAAGCCACCAAAGGGGGTTAAGTCAGATTGGATTATGCATGAATATCGTCTAAGTGACTCGAGAAAACAAGCCAACAAGCAACTTGGGTCCATGAGATTGGACGATTGGGTTCTCTGTAGGATCTATAAGAAGAGGCATCTGGGCAAAGCTTATTTGGACCAAAAAGTGGAAGAAGAAGAACCAATTACGGATCCCAAAATTGAGATAACAGCAGCCAATAATCATGAGGAACAAATGATGTTGAAATTTCCAAGGACTTGTTCCATTACTAGTTTATTGGAAATGGACTACTTGGCCCCAATCTCCCAACTTTTGAGTGAGAATTCTAGCTATGACTTCCAAAACAACTTGGCCAGTGCAGGAAATGCTGGTCATGCCCAAATGTTTCAGTTTGGTGAAATGCCATACCAAAGCACAACAGACTCAGCCAAATTCCAAGTGACTCAGAGTTGCCCTTCTAACCAACCCTGGTTTGCGAATCCGGTGTATAACTTGAATGGTTTGGACCGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

289

Amino Acids

33.2

Weight (kDa)

7.01

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69490
malus_domestica	MD13G1069200.v1.1 MD16G1069500.v1.1
prunus_persica	Prupe.1G277500_v2.0.a1
pyrus_communis	pycom13g06200 pycom16g06070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	517
AclWI	GGATC	4 cut(s)	143, 479, 536, 549
AcoI	YGGCCR	1 cut(s)	702
AcsI	RAATTY	3 cut(s)	596, 673, 782
AfaI	GTAC	2 cut(s)	224, 283
AfiI	CCNNNNNNNGG	3 cut(s)	99, 362, 517
AgsI	TTSAA	2 cut(s)	595, 847
AhlI	ACTAGT	1 cut(s)	620
AjnI	CCWGG	4 cut(s)	31, 87, 345, 818
AjuI	GAANNNNNNNTTGG	2 cut(s)	595, 627
AluBI	AGCT	5 cut(s)	18, 25, 332, 500, 681
AluI	AGCT	5 cut(s)	18, 25, 332, 500, 681
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	4 cut(s)	143, 479, 536, 549
Ama87I	CYCGRG	2 cut(s)	259, 409
AoxI	GGCC	5 cut(s)	6, 90, 101, 645, 702
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	3 cut(s)	596, 673, 782
AspS9I	GGNCC	4 cut(s)	438, 508, 646, 856
AsuHPI	GGTGA	2 cut(s)	334, 758
AvaI	CYCGRG	2 cut(s)	259, 409
AvaII	GGWCC	3 cut(s)	438, 508, 856
BalI	TGGCCA	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	575
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	4 cut(s)	33, 89, 347, 820
BcoDI	GTCTC	1 cut(s)	262
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	2 cut(s)	621, 678
BfmI	CTRYAG	1 cut(s)	466
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	4 cut(s)	33, 89, 347, 820
Bme18I	GGWCC	3 cut(s)	438, 508, 856
BmeT110I	CYCGRG	2 cut(s)	259, 409
BmgT120I	GGNCC	4 cut(s)	438, 508, 646, 856
BmiI	GGNNCC	3 cut(s)	439, 543, 648
BmrFI	CCNGG	4 cut(s)	33, 89, 347, 820
BmsI	GCATC	1 cut(s)	496
BpuEI	CTTGAG	1 cut(s)	82
BsaJI	CCNNGG	5 cut(s)	152, 209, 346, 602, 818
BsaWI	WCCGGW	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 362, 517
Bse1I	ACTGG	2 cut(s)	272, 705
BseBI	CCWGG	4 cut(s)	33, 89, 347, 820
BseDI	CCNNGG	5 cut(s)	152, 209, 346, 602, 818
BseLI	CCNNNNNNNGG	3 cut(s)	99, 362, 517
BseMII	CTCAG	4 cut(s)	12, 156, 789, 809
BseNI	ACTGG	2 cut(s)	272, 705
BseXI	GCAGC	1 cut(s)	575
BsgI	GTGCAG	1 cut(s)	729
BshFI	GGCC	5 cut(s)	8, 92, 103, 647, 704
BsiHKCI	CYCGRG	2 cut(s)	259, 409
BsiSI	CCGG	1 cut(s)	833
BslFI	GGGAC	2 cut(s)	227, 319
BslI	CCNNNNNNNGG	3 cut(s)	99, 362, 517
BsmAI	GTCTC	1 cut(s)	262
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	227, 319
BsnI	GGCC	5 cut(s)	8, 92, 103, 647, 704
BsoBI	CYCGRG	2 cut(s)	259, 409
Bsp143I	GATC	4 cut(s)	133, 148, 471, 541
Bsp19I	CCATGG	1 cut(s)	152
BspANI	GGCC	5 cut(s)	8, 92, 103, 647, 704
BspCNI	CTCAG	4 cut(s)	13, 157, 788, 808
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	439, 543, 648
BspPI	GGATC	4 cut(s)	143, 479, 536, 549
BsrI	ACTGG	2 cut(s)	272, 705
BssECI	CCNNGG	5 cut(s)	152, 209, 346, 602, 818
BssMI	GATC	4 cut(s)	133, 148, 471, 541
BssT1I	CCWWGG	3 cut(s)	152, 209, 602
Bst2UI	CCWGG	4 cut(s)	33, 89, 347, 820
Bst4CI	ACNGT	3 cut(s)	256, 302, 860
Bst6I	CTCTTC	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	5 cut(s)	21, 165, 401, 775, 795
BstDSI	CCRYGG	1 cut(s)	152
BstKTI	GATC	4 cut(s)	136, 151, 474, 544
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	4 cut(s)	133, 148, 471, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	716, 725
BstNI	CCWGG	4 cut(s)	33, 89, 347, 820
BstSCI	CCNGG	4 cut(s)	31, 87, 345, 818
BstSFI	CTRYAG	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	575
BstX2I	RGATCY	2 cut(s)	471, 541
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	2 cut(s)	471, 541
BsuRI	GGCC	5 cut(s)	8, 92, 103, 647, 704
BtgI	CCRYGG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	307, 712
Cac8I	GCNNGC	1 cut(s)	353
CciI	TCATGA	1 cut(s)	574
Cfr13I	GGNCC	4 cut(s)	438, 508, 646, 856
Csp6I	GTAC	2 cut(s)	223, 282
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	7 cut(s)	70, 105, 153, 389, 442, 575, 725
CviQI	GTAC	2 cut(s)	223, 282
DdeI	CTNAG	5 cut(s)	21, 165, 401, 775, 795
DpnI	GATC	4 cut(s)	135, 150, 473, 543
DpnII	GATC	4 cut(s)	133, 148, 471, 541
EaeI	YGGCCR	1 cut(s)	702
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco130I	CCWWGG	3 cut(s)	152, 209, 602
Eco47I	GGWCC	3 cut(s)	438, 508, 856
Eco88I	CYCGRG	2 cut(s)	259, 409
EcoRI	GAATTC	1 cut(s)	673
EcoRII	CCWGG	4 cut(s)	31, 87, 345, 818
EcoT14I	CCWWGG	3 cut(s)	152, 209, 602
EcoT22I	ATGCAT	1 cut(s)	390
ErhI	CCWWGG	3 cut(s)	152, 209, 602
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	7 cut(s)	73, 108, 156, 392, 445, 578, 728
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	2 cut(s)	227, 319
FatI	CATG	7 cut(s)	69, 104, 152, 388, 441, 574, 724
Fnu4HI	GCNGC	1 cut(s)	564
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	2 cut(s)	621, 678
GluI	GCNGC	1 cut(s)	564
HaeIII	GGCC	5 cut(s)	8, 92, 103, 647, 704
HapII	CCGG	1 cut(s)	833
Hin1II	CATG	7 cut(s)	73, 108, 156, 392, 445, 578, 728
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	5 cut(s)	42, 407, 773, 793, 829
HpaII	CCGG	1 cut(s)	833
HphI	GGTGA	2 cut(s)	334, 758
Hpy188I	TCNGA	3 cut(s)	22, 376, 798
Hpy188III	TCNNGA	2 cut(s)	411, 575
HpyAV	CCTTC	1 cut(s)	816
HpyCH4III	ACNGT	3 cut(s)	256, 302, 860
HpyCH4V	TGCA	2 cut(s)	388, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	716, 725
HpyF3I	CTNAG	5 cut(s)	21, 165, 401, 775, 795
Hsp92II	CATG	7 cut(s)	73, 108, 156, 392, 445, 578, 728
Kzo9I	GATC	4 cut(s)	133, 148, 471, 541
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	621, 678
MaeIII	GTNAC	4 cut(s)	159, 263, 404, 790
MalI	GATC	4 cut(s)	135, 150, 473, 543
MboI	GATC	4 cut(s)	133, 148, 471, 541
MboII	GAAGA	5 cut(s)	337, 493, 533, 536, 539
MflI	RGATCY	2 cut(s)	471, 541
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	7 cut(s)	294, 534, 549, 596, 673, 782, 862
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	3 cut(s)	401, 767, 787
MnlI	CCTC	6 cut(s)	39, 52, 89, 106, 477, 571
Mox20I	TGGCCA	1 cut(s)	704
Mph1103I	ATGCAT	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	2 cut(s)	369, 865
Msp20I	TGGCCA	1 cut(s)	704
MspI	CCGG	1 cut(s)	833
MspR9I	CCNGG	4 cut(s)	33, 89, 347, 820
MvaI	CCWGG	4 cut(s)	33, 89, 347, 820
MwoI	GCNNNNNNNGC	2 cut(s)	716, 725
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	133, 148, 471, 541
NlaIII	CATG	7 cut(s)	73, 108, 156, 392, 445, 578, 728
NlaIV	GGNNCC	3 cut(s)	439, 543, 648
NmuCI	GTSAC	2 cut(s)	404, 790
NsiI	ATGCAT	1 cut(s)	390
PaeR7I	CTCGAG	1 cut(s)	409
PagI	TCATGA	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	42, 829
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	3 cut(s)	401, 767, 787
PpsI	GAGTC	3 cut(s)	401, 767, 787
Psp6I	CCWGG	4 cut(s)	31, 87, 345, 818
PspGI	CCWGG	4 cut(s)	31, 87, 345, 818
PspN4I	GGNNCC	3 cut(s)	439, 543, 648
PspPI	GGNCC	4 cut(s)	438, 508, 646, 856
PsuI	RGATCY	2 cut(s)	471, 541
RsaI	GTAC	2 cut(s)	224, 283
RsaNI	GTAC	2 cut(s)	223, 282
SaqAI	TTAA	2 cut(s)	369, 865
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	4 cut(s)	133, 148, 471, 541
Sau96I	GGNCC	4 cut(s)	438, 508, 646, 856
SchI	GAGTC	3 cut(s)	401, 767, 787
ScrFI	CCNGG	4 cut(s)	33, 89, 347, 820
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	466
Sfr274I	CTCGAG	1 cut(s)	409
SinI	GGWCC	3 cut(s)	438, 508, 856
SlaI	CTCGAG	1 cut(s)	409
SmlI	CTYRAG	2 cut(s)	97, 409
SmoI	CTYRAG	2 cut(s)	97, 409
SpeI	ACTAGT	1 cut(s)	620
Sse9I	AATT	7 cut(s)	294, 534, 549, 596, 673, 782, 862
SspMI	CTAG	2 cut(s)	621, 678
StyD4I	CCNGG	4 cut(s)	31, 87, 345, 818
StyI	CCWWGG	3 cut(s)	152, 209, 602
TaaI	ACNGT	3 cut(s)	256, 302, 860
TaqI	TCGA	1 cut(s)	410
TasI	AATT	7 cut(s)	294, 534, 549, 596, 673, 782, 862
TfiI	GAWTC	2 cut(s)	42, 829
Tru1I	TTAA	2 cut(s)	369, 865
Tru9I	TTAA	2 cut(s)	369, 865
TscAI	CASTG	2 cut(s)	307, 712
TseFI	GTSAC	2 cut(s)	404, 790
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	2 cut(s)	404, 790
TspDTI	ATGAA	2 cut(s)	204, 405
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	2 cut(s)	307, 712
Van91I	CCANNNNNTGG	1 cut(s)	517
VpaK11BI	GGWCC	3 cut(s)	438, 508, 856
XapI	RAATTY	3 cut(s)	596, 673, 782
XhoI	CTCGAG	1 cut(s)	409
XspI	CTAG	2 cut(s)	621, 678
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.