Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0020164

Physical Location & Seq

Genomic Coordinates Forward (+)

3883528 .. 3884674

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAGGCCAAACAAAGCTCTCAGCTTCCTCCTGGTTTTAGGTTTCACCCAACTGATGAGGAACTCATCATGTTTTACCTCAAATACCAAGCCACCTCACGGCCCTGCCCTGCGTCCATCATCCCAGAAGTTGATATTTACAAGTTCGATCCGTGGGAATTGCCTGAGAAGGCAGAGTTTGGAGAAAATGAATGGTACTTCTTTACCCCTAGGGACAGGAAGTACCCGAACGGGATACGCCCGAATCGGGCAACCGTGTCGGGTTACTGGAAAGCCACGGGAACAGACAAGGCGATTTACAGCGAGTCCAAGTACGTGGGGGTGAAGAAAGCCCTTGTGTTTTACCAGGGCAGACCGCCGAAGGGGGTCAAATCGGATTGGATTATGCACGAATATCGCTTAGGCGACACTCGAAACCAACGGGCCAACAAGCAACTCGGGTCCATGAGGCTGGATGATTGGGTCCTCTGCAGGATCTACAAAAAGCGGCAACTGGGCAAAGCTTATTTGGATCAAAAAGTGGAAGAAGATGAAAAAACTGAGATGACAACACCAGAAACAGCGAAAGCCAATGAGGAACAAACGATGTTGAAATTTCCACGGACTTGTTCGATAACTAGTTTACTGGACATGGACTACATGGGCCCGATGTCTCAACTTTTGAGTGACAATAATTCTGGATACGATTTCCAGAGCAGCTTGGCCGGCGCAGGAGCTGGCCACGCGCAAATGTTTCAGTTCGGTGAAATGCCTAATTACCAAACCGACGGACTCCGGGAAATTCCAGGCGATGGCTCAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

268

Amino Acids

30.69

Weight (kDa)

5.79

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 134	1.4e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69490
malus_domestica	MD13G1069200.v1.1 MD16G1069500.v1.1
prunus_persica	Prupe.1G277500_v2.0.a1
pyrus_communis	pycom13g06200 pycom16g06070

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccII	CGCG	1 cut(s)	725
AciI	CCGC	2 cut(s)	356, 487
AclWI	GGATC	3 cut(s)	143, 482, 519
AcoI	YGGCCR	2 cut(s)	702, 718
AcsI	RAATTY	2 cut(s)	593, 780
AfaI	GTAC	3 cut(s)	197, 224, 314
AfiI	CCNNNNNNNGG	4 cut(s)	99, 247, 362, 791
AgsI	TTSAA	1 cut(s)	592
AhlI	ACTAGT	1 cut(s)	617
AjnI	CCWGG	3 cut(s)	31, 345, 784
AluBI	AGCT	5 cut(s)	18, 25, 503, 699, 716
AluI	AGCT	5 cut(s)	18, 25, 503, 699, 716
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	3 cut(s)	143, 482, 519
AlwNI	CAGNNNCTG	1 cut(s)	716
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	6 cut(s)	6, 101, 423, 643, 702, 718
ApaI	GGGCCC	1 cut(s)	647
ApeKI	GCWGC	1 cut(s)	696
ApoI	RAATTY	2 cut(s)	593, 780
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	2 cut(s)	710, 727
AspS9I	GGNCC	6 cut(s)	102, 423, 441, 463, 643, 644
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	3 cut(s)	38, 334, 755
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	441, 463
AvrII	CCTAGG	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	647
BalI	TGGCCA	1 cut(s)	720
BanII	GRGCYC	1 cut(s)	647
BbvI	GCAGC	1 cut(s)	708
BccI	CCATC	2 cut(s)	125, 785
BceAI	ACGGC	1 cut(s)	116
BcgI	CGANNNNNNTGC	4 cut(s)	240, 274, 377, 411
BciT130I	CCWGG	3 cut(s)	33, 347, 786
BciVI	GTATCC	2 cut(s)	228, 674
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	1 cut(s)	657
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	3 cut(s)	210, 618, 802
BfmI	CTRYAG	1 cut(s)	469
BfuI	GTATCC	2 cut(s)	228, 674
BisI	GCNGC	2 cut(s)	488, 697
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	2 cut(s)	489, 698
Bme1390I	CCNGG	4 cut(s)	33, 347, 776, 786
Bme18I	GGWCC	2 cut(s)	441, 463
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	6 cut(s)	102, 423, 441, 463, 643, 644
BmiI	GGNNCC	3 cut(s)	442, 464, 645
BmrFI	CCNGG	4 cut(s)	33, 347, 776, 786
BmrI	ACTGGG	1 cut(s)	503
BmuI	ACTGGG	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	776
BsaAI	YACGTR	1 cut(s)	316
BsaJI	CCNNGG	5 cut(s)	152, 209, 276, 346, 599
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 247, 362, 791
Bse118I	RCCGGY	1 cut(s)	704
Bse1I	ACTGG	3 cut(s)	272, 498, 630
BseBI	CCWGG	3 cut(s)	33, 347, 786
BseDI	CCNNGG	5 cut(s)	152, 209, 276, 346, 599
BseGI	GGATG	2 cut(s)	120, 460
BseLI	CCNNNNNNNGG	4 cut(s)	99, 247, 362, 791
BseMII	CTCAG	3 cut(s)	35, 156, 531
BseNI	ACTGG	3 cut(s)	272, 498, 630
BseSI	GKGCMC	1 cut(s)	647
BseXI	GCAGC	1 cut(s)	708
Bsh1236I	CGCG	1 cut(s)	725
BshFI	GGCC	6 cut(s)	8, 103, 425, 645, 704, 720
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	705, 775
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	4 cut(s)	99, 247, 362, 791
BsmAI	GTCTC	1 cut(s)	657
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	6 cut(s)	8, 103, 425, 645, 704, 720
BsoBI	CYCGRG	1 cut(s)	437
Bsp120I	GGGCCC	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp143I	GATC	3 cut(s)	148, 474, 511
BspACI	CCGC	2 cut(s)	356, 487
BspANI	GGCC	6 cut(s)	8, 103, 425, 645, 704, 720
BspCNI	CTCAG	3 cut(s)	34, 157, 532
BspFNI	CGCG	1 cut(s)	725
BspLI	GGNNCC	3 cut(s)	442, 464, 645
BspMAI	CTGCAG	1 cut(s)	473
BspPI	GGATC	3 cut(s)	143, 482, 519
BsrFI	RCCGGY	1 cut(s)	704
BsrI	ACTGG	3 cut(s)	272, 498, 630
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	5 cut(s)	152, 209, 276, 346, 599
BssMI	GATC	3 cut(s)	148, 474, 511
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	3 cut(s)	33, 347, 786
Bst4CI	ACNGT	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	706, 718
BstDEI	CTNAG	5 cut(s)	21, 165, 400, 540, 796
BstDSI	CCRYGG	3 cut(s)	152, 276, 599
BstF5I	GGATG	2 cut(s)	120, 460
BstFNI	CGCG	1 cut(s)	725
BstHHI	GCGC	2 cut(s)	710, 727
BstKTI	GATC	3 cut(s)	151, 477, 514
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	3 cut(s)	148, 474, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	705, 722
BstNI	CCWGG	3 cut(s)	33, 347, 786
BstSCI	CCNGG	4 cut(s)	31, 345, 774, 784
BstSFI	CTRYAG	1 cut(s)	469
BstSLI	GKGCMC	1 cut(s)	647
BstUI	CGCG	1 cut(s)	725
BstV1I	GCAGC	1 cut(s)	708
BstX2I	RGATCY	1 cut(s)	474
BstXI	CCANNNNNNTGG	2 cut(s)	316, 451
BstYI	RGATCY	1 cut(s)	474
BsuI	GTATCC	2 cut(s)	228, 674
BsuRI	GGCC	6 cut(s)	8, 103, 425, 645, 704, 720
BtgI	CCRYGG	3 cut(s)	152, 276, 599
BtsCI	GGATG	2 cut(s)	120, 460
Cac8I	GCNNGC	2 cut(s)	706, 718
CaiI	CAGNNNCTG	1 cut(s)	716
CfoI	GCGC	2 cut(s)	710, 727
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	6 cut(s)	102, 423, 441, 463, 643, 644
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	3 cut(s)	196, 223, 313
CviAII	CATG	4 cut(s)	70, 445, 631, 640
CviQI	GTAC	3 cut(s)	196, 223, 313
DdeI	CTNAG	5 cut(s)	21, 165, 400, 540, 796
DpnI	GATC	3 cut(s)	150, 476, 513
DpnII	GATC	3 cut(s)	148, 474, 511
EaeI	YGGCCR	2 cut(s)	702, 718
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	647
Eco47I	GGWCC	2 cut(s)	441, 463
Eco88I	CYCGRG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	3 cut(s)	31, 345, 784
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	4 cut(s)	73, 448, 634, 643
FaiI	YATR	5 cut(s)	71, 386, 446, 632, 641
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	69, 444, 630, 639
Fnu4HI	GCNGC	2 cut(s)	488, 697
FokI	GGATG	2 cut(s)	107, 467
FriOI	GRGCYC	1 cut(s)	647
Fsp4HI	GCNGC	2 cut(s)	488, 697
FspBI	CTAG	3 cut(s)	210, 618, 802
GlaI	GCGC	2 cut(s)	709, 726
GluI	GCNGC	2 cut(s)	488, 697
HaeIII	GGCC	6 cut(s)	8, 103, 425, 645, 704, 720
HapII	CCGG	2 cut(s)	705, 775
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	710, 727
Hin1II	CATG	4 cut(s)	73, 448, 634, 643
Hin6I	GCGC	2 cut(s)	708, 725
HinP1I	GCGC	2 cut(s)	708, 725
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	3 cut(s)	244, 305, 771
HpaII	CCGG	2 cut(s)	705, 775
HphI	GGTGA	3 cut(s)	38, 334, 755
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	2 cut(s)	376, 799
Hpy188III	TCNNGA	2 cut(s)	678, 691
Hpy8I	GTNNAC	1 cut(s)	623
Hpy99I	CGWCG	1 cut(s)	770
HpyAV	CCTTC	2 cut(s)	163, 355
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	388, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	705, 722
HpyF3I	CTNAG	5 cut(s)	21, 165, 400, 540, 796
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	4 cut(s)	73, 448, 634, 643
HspAI	GCGC	2 cut(s)	708, 725
KroI	GCCGGC	1 cut(s)	704
KroNI	GCCGGC	1 cut(s)	706
Kzo9I	GATC	3 cut(s)	148, 474, 511
LmnI	GCTCC	1 cut(s)	713
Lsp1109I	GCAGC	1 cut(s)	708
MaeI	CTAG	3 cut(s)	210, 618, 802
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	263, 665
MalI	GATC	3 cut(s)	150, 476, 513
MboI	GATC	3 cut(s)	148, 474, 511
MboII	GAAGA	3 cut(s)	337, 536, 539
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	647
MlsI	TGGCCA	1 cut(s)	720
MluCI	AATT	5 cut(s)	158, 593, 673, 754, 780
MluNI	TGGCCA	1 cut(s)	720
MlyI	GAGTC	2 cut(s)	314, 765
MnlI	CCTC	7 cut(s)	39, 52, 89, 106, 441, 476, 568
Mox20I	TGGCCA	1 cut(s)	720
MroNI	GCCGGC	1 cut(s)	704
MscI	TGGCCA	1 cut(s)	720
Msp20I	TGGCCA	1 cut(s)	720
MspI	CCGG	2 cut(s)	705, 775
MspR9I	CCNGG	4 cut(s)	33, 347, 776, 786
MvaI	CCWGG	3 cut(s)	33, 347, 786
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	2 cut(s)	705, 722
NaeI	GCCGGC	1 cut(s)	706
NciI	CCSGG	1 cut(s)	776
NdeII	GATC	3 cut(s)	148, 474, 511
NgoMIV	GCCGGC	1 cut(s)	704
NlaIII	CATG	4 cut(s)	73, 448, 634, 643
NlaIV	GGNNCC	3 cut(s)	442, 464, 645
NmuCI	GTSAC	1 cut(s)	665
PdiI	GCCGGC	1 cut(s)	706
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	791
PfoI	TCCNGGA	1 cut(s)	774
PkrI	GCNGC	2 cut(s)	489, 698
PleI	GAGTC	2 cut(s)	313, 765
PpsI	GAGTC	2 cut(s)	313, 765
Ppu21I	YACGTR	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	3 cut(s)	31, 345, 784
PspGI	CCWGG	3 cut(s)	31, 345, 784
PspN4I	GGNNCC	3 cut(s)	442, 464, 645
PspOMI	GGGCCC	1 cut(s)	643
PspPI	GGNCC	6 cut(s)	102, 423, 441, 463, 643, 644
PspPPI	RGGWCCY	1 cut(s)	463
PstI	CTGCAG	1 cut(s)	473
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	474
RsaI	GTAC	3 cut(s)	197, 224, 314
RsaNI	GTAC	3 cut(s)	196, 223, 313
SatI	GCNGC	2 cut(s)	488, 697
Sau3AI	GATC	3 cut(s)	148, 474, 511
Sau96I	GGNCC	6 cut(s)	102, 423, 441, 463, 643, 644
SchI	GAGTC	2 cut(s)	314, 765
ScrFI	CCNGG	4 cut(s)	33, 347, 776, 786
SduI	GDGCHC	1 cut(s)	647
SetI	ASST	9 cut(s)	20, 27, 44, 81, 98, 318, 505, 701, 718
SfcI	CTRYAG	1 cut(s)	469
SinI	GGWCC	2 cut(s)	441, 463
SpeI	ACTAGT	1 cut(s)	617
Sse9I	AATT	5 cut(s)	158, 593, 673, 754, 780
SsiI	CCGC	2 cut(s)	356, 487
SspMI	CTAG	3 cut(s)	210, 618, 802
StyD4I	CCNGG	4 cut(s)	31, 345, 774, 784
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	147, 412, 611
TasI	AATT	5 cut(s)	158, 593, 673, 754, 780
TauI	GCSGC	1 cut(s)	490
TfiI	GAWTC	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	665
TseI	GCWGC	1 cut(s)	696
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	2 cut(s)	204, 546
TspGWI	ACGGA	3 cut(s)	141, 616, 783
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	2 cut(s)	441, 463
XapI	RAATTY	2 cut(s)	593, 780
XmaJI	CCTAGG	1 cut(s)	209
XspI	CTAG	3 cut(s)	210, 618, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.