Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0020164

Physical Location & Seq

Genomic Coordinates Forward (+)

4042684 .. 4043911

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGGCAAAACGAAGCTCCGACCTTCCTCCTGGTTTTAGATTCCACCCAACTGATGAGGAGCTCATCGTTTTTTACCTAAAAAACCAAGCCTCCTCAAGGCCCTGCCCTGTGTCCATCATCCCAGAGGTTGATATTTACAAGTTTGACCCGTGGGAGTTACCTGAGAAGGCAGAGTTTGGAGAGAGCGAATGGTACTTCTTCACCCCGAGAGACCGAAAGTACCCGAACGGGGTGCGCCCGAATCGGGCAACCGTATCGGGTTACTGGAAAGCCACGGGAACAGACAAGGCGATTTACAGCGAGTCCAAGTACGTGGGGGTGAAGAAAGCTCTTGTGTTTTACCAGGGCAGGCCGCCAAAGGGGGTCAAGTCGGACTGGATTATGCACGAGTATCGCTTAAGCGACTCGCGAAAACAACAAGCCAACAAGCACCTCGGGTCCATGAGACTGGATGATTGGGTCCTCTGCAGGATCTACAAAAAAAAGCATCTGGGCAAAGCTTATCTGGATCAAAAAGTGGAAGAAGATCAAAAAATTGAGATGAAAACACCAGAAACGGCGAAAGCCAACGAGGAACAAGTGATGTTGAAATTTCCACGGGCCTGTTCGATAACTAGCTTACTGGACATGGACTACTTGGGCTCGATCTCCCAACTTTTTAGTGACAATAATTCTGGATACGATTTTCAGAACAGCATGGCCGGCGCAGGAGCCGGCCAGGCTCAAATGTTTCAGTTCGGGGAAACGCAGAATTACCAAAACACGATGGACTCCGGTAAATTCCAAGTGATGGCTCAGAATAGCGTTTTTGACCACCAACCGTGGTTTGGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

280

Amino Acids

32.16

Weight (kDa)

7.65

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69490
malus_domestica	MD13G1069200.v1.1 MD16G1069500.v1.1
prunus_persica	Prupe.1G277500_v2.0.a1
pyrus_communis	pycom13g06200 pycom16g06070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	793
AccII	CGCG	1 cut(s)	412
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	2 cut(s)	482, 519
AcoI	YGGCCR	2 cut(s)	702, 718
AcsI	RAATTY	2 cut(s)	593, 782
AfaI	GTAC	3 cut(s)	197, 224, 314
AfiI	CCNNNNNNNGG	6 cut(s)	99, 232, 247, 362, 793, 830
AflII	CTTAAG	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	592
AjnI	CCWGG	3 cut(s)	31, 345, 720
AluBI	AGCT	5 cut(s)	18, 64, 332, 503, 621
AluI	AGCT	5 cut(s)	18, 64, 332, 503, 621
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	2 cut(s)	207, 442
AlwI	GGATC	2 cut(s)	482, 519
Ama87I	CYCGRG	2 cut(s)	208, 437
AoxI	GGCC	5 cut(s)	101, 353, 603, 702, 718
ApoI	RAATTY	2 cut(s)	593, 782
AspLEI	GCGC	2 cut(s)	240, 710
AspS9I	GGNCC	5 cut(s)	102, 441, 463, 603, 833
AsuHPI	GGTGA	2 cut(s)	196, 334
AvaI	CYCGRG	2 cut(s)	208, 437
AvaII	GGWCC	3 cut(s)	441, 463, 833
BanII	GRGCYC	2 cut(s)	66, 647
BauI	CACGAG	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	3 cut(s)	125, 763, 787
BceAI	ACGGC	1 cut(s)	576
BcgI	CGANNNNNNTGC	6 cut(s)	217, 240, 251, 274, 377, 411
BciT130I	CCWGG	3 cut(s)	33, 347, 722
BciVI	GTATCC	1 cut(s)	674
BcoDI	GTCTC	2 cut(s)	207, 442
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	469
BfrI	CTTAAG	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	674
BglI	GCCNNNNNGGC	1 cut(s)	722
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	3 cut(s)	33, 347, 722
Bme18I	GGWCC	3 cut(s)	441, 463, 833
BmeT110I	CYCGRG	2 cut(s)	208, 437
BmgT120I	GGNCC	5 cut(s)	102, 441, 463, 603, 833
BmiI	GGNNCC	3 cut(s)	442, 464, 715
BmrFI	CCNGG	3 cut(s)	33, 347, 722
BmsI	GCATC	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	6 cut(s)	152, 276, 346, 436, 599, 824
BsaWI	WCCGGW	1 cut(s)	776
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	6 cut(s)	99, 232, 247, 362, 793, 830
Bse118I	RCCGGY	2 cut(s)	704, 716
Bse1I	ACTGG	4 cut(s)	272, 383, 456, 630
BseBI	CCWGG	3 cut(s)	33, 347, 722
BseDI	CCNNGG	6 cut(s)	152, 276, 346, 436, 599, 824
BseGI	GGATG	2 cut(s)	120, 460
BseLI	CCNNNNNNNGG	6 cut(s)	99, 232, 247, 362, 793, 830
BseMII	CTCAG	2 cut(s)	156, 812
BseNI	ACTGG	4 cut(s)	272, 383, 456, 630
BseRI	GAGGAG	2 cut(s)	74, 85
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	5 cut(s)	103, 355, 605, 704, 720
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	2 cut(s)	208, 437
BsiSI	CCGG	3 cut(s)	705, 717, 777
BslI	CCNNNNNNNGG	6 cut(s)	99, 232, 247, 362, 793, 830
BsmAI	GTCTC	2 cut(s)	207, 442
BsnI	GGCC	5 cut(s)	103, 355, 605, 704, 720
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	2 cut(s)	208, 437
Bsp1286I	GDGCHC	2 cut(s)	66, 647
Bsp143I	GATC	4 cut(s)	474, 511, 529, 648
Bsp68I	TCGCGA	1 cut(s)	412
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	5 cut(s)	103, 355, 605, 704, 720
BspCNI	CTCAG	2 cut(s)	157, 811
BspFNI	CGCG	1 cut(s)	412
BspLI	GGNNCC	3 cut(s)	442, 464, 715
BspMAI	CTGCAG	1 cut(s)	473
BspPI	GGATC	2 cut(s)	482, 519
BspTI	CTTAAG	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	207
BsrFI	RCCGGY	2 cut(s)	704, 716
BsrI	ACTGG	4 cut(s)	272, 383, 456, 630
BssAI	RCCGGY	2 cut(s)	704, 716
BssECI	CCNNGG	6 cut(s)	152, 276, 346, 436, 599, 824
BssMI	GATC	4 cut(s)	474, 511, 529, 648
BssSI	CACGAG	1 cut(s)	389
Bst2BI	CACGAG	1 cut(s)	389
Bst2UI	CCWGG	3 cut(s)	33, 347, 722
Bst4CI	ACNGT	3 cut(s)	256, 825, 837
BstAFI	CTTAAG	1 cut(s)	400
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	3 cut(s)	353, 706, 718
BstDEI	CTNAG	2 cut(s)	165, 798
BstDSI	CCRYGG	4 cut(s)	152, 276, 599, 824
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	120, 460
BstFNI	CGCG	1 cut(s)	412
BstHHI	GCGC	2 cut(s)	240, 710
BstKTI	GATC	4 cut(s)	477, 514, 532, 651
BstMAI	GTCTC	2 cut(s)	207, 442
BstMBI	GATC	4 cut(s)	474, 511, 529, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	705, 722
BstNI	CCWGG	3 cut(s)	33, 347, 722
BstSCI	CCNGG	3 cut(s)	31, 345, 720
BstSFI	CTRYAG	1 cut(s)	469
BstUI	CGCG	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	474
BstXI	CCANNNNNNTGG	2 cut(s)	316, 451
BstYI	RGATCY	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	674
BsuRI	GGCC	5 cut(s)	103, 355, 605, 704, 720
BtgI	CCRYGG	4 cut(s)	152, 276, 599, 824
BtsCI	GGATG	2 cut(s)	120, 460
BtuMI	TCGCGA	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	353, 706, 718
CfoI	GCGC	2 cut(s)	240, 710
Cfr10I	RCCGGY	2 cut(s)	704, 716
Cfr13I	GGNCC	5 cut(s)	102, 441, 463, 603, 833
Csp6I	GTAC	3 cut(s)	196, 223, 313
CviAII	CATG	3 cut(s)	445, 631, 700
CviQI	GTAC	3 cut(s)	196, 223, 313
DdeI	CTNAG	2 cut(s)	165, 798
DpnI	GATC	4 cut(s)	476, 513, 531, 650
DpnII	GATC	4 cut(s)	474, 511, 529, 648
EaeI	YGGCCR	2 cut(s)	702, 718
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	2 cut(s)	66, 647
Eco31I	GGTCTC	1 cut(s)	207
Eco47I	GGWCC	3 cut(s)	441, 463, 833
Eco53kI	GAGCTC	1 cut(s)	64
Eco88I	CYCGRG	2 cut(s)	208, 437
EcoICRI	GAGCTC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoO109I	RGGNCCY	2 cut(s)	102, 463
EcoRII	CCWGG	3 cut(s)	31, 345, 720
EcoT38I	GRGCYC	2 cut(s)	66, 647
FaeI	CATG	3 cut(s)	448, 634, 703
FaiI	YATR	4 cut(s)	386, 446, 632, 701
FatI	CATG	3 cut(s)	444, 630, 699
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	2 cut(s)	107, 467
FriOI	GRGCYC	2 cut(s)	66, 647
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	2 cut(s)	239, 709
GluI	GCNGC	1 cut(s)	356
HaeIII	GGCC	5 cut(s)	103, 355, 605, 704, 720
HapII	CCGG	3 cut(s)	705, 717, 777
HhaI	GCGC	2 cut(s)	240, 710
Hin1II	CATG	3 cut(s)	448, 634, 703
Hin6I	GCGC	2 cut(s)	238, 708
HinP1I	GCGC	2 cut(s)	238, 708
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	5 cut(s)	42, 244, 305, 407, 773
HpaII	CCGG	3 cut(s)	705, 717, 777
HphI	GGTGA	2 cut(s)	196, 334
Hpy188I	TCNGA	4 cut(s)	22, 376, 693, 801
Hpy188III	TCNNGA	3 cut(s)	411, 509, 678
HpyAV	CCTTC	2 cut(s)	35, 163
HpyCH4III	ACNGT	3 cut(s)	256, 825, 837
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	388, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	705, 722
HpyF3I	CTNAG	2 cut(s)	165, 798
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	448, 634, 703
HspAI	GCGC	2 cut(s)	238, 708
KroI	GCCGGC	2 cut(s)	704, 716
KroNI	GCCGGC	2 cut(s)	706, 718
Kzo9I	GATC	4 cut(s)	474, 511, 529, 648
LmnI	GCTCC	3 cut(s)	23, 61, 713
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	159, 263, 665
MalI	GATC	4 cut(s)	476, 513, 531, 650
MboI	GATC	4 cut(s)	474, 511, 529, 648
MboII	GAAGA	4 cut(s)	193, 337, 536, 539
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	2 cut(s)	66, 647
MluCI	AATT	5 cut(s)	537, 593, 673, 754, 782
MlyI	GAGTC	3 cut(s)	314, 401, 767
MmeI	TCCRAC	2 cut(s)	45, 354
MnlI	CCTC	8 cut(s)	39, 52, 103, 106, 121, 446, 476, 568
MroNI	GCCGGC	2 cut(s)	704, 716
MseI	TTAA	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	400
MspI	CCGG	3 cut(s)	705, 717, 777
MspR9I	CCNGG	3 cut(s)	33, 347, 722
MvaI	CCWGG	3 cut(s)	33, 347, 722
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	2 cut(s)	705, 722
NaeI	GCCGGC	2 cut(s)	706, 718
NdeII	GATC	4 cut(s)	474, 511, 529, 648
NgoMIV	GCCGGC	2 cut(s)	704, 716
NlaIII	CATG	3 cut(s)	448, 634, 703
NlaIV	GGNNCC	3 cut(s)	442, 464, 715
NmuCI	GTSAC	1 cut(s)	665
NruI	TCGCGA	1 cut(s)	412
PdiI	GCCGGC	2 cut(s)	706, 718
PfeI	GAWTC	2 cut(s)	42, 244
PflMI	CCANNNNNTGG	1 cut(s)	793
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	3 cut(s)	313, 401, 767
PpsI	GAGTC	3 cut(s)	313, 401, 767
Ppu21I	YACGTR	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	463
Psp124BI	GAGCTC	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	3 cut(s)	31, 345, 720
PspGI	CCWGG	3 cut(s)	31, 345, 720
PspN4I	GGNNCC	3 cut(s)	442, 464, 715
PspPI	GGNCC	5 cut(s)	102, 441, 463, 603, 833
PspPPI	RGGWCCY	1 cut(s)	463
PstI	CTGCAG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	474
RruI	TCGCGA	1 cut(s)	412
RsaI	GTAC	3 cut(s)	197, 224, 314
RsaNI	GTAC	3 cut(s)	196, 223, 313
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	4 cut(s)	474, 511, 529, 648
Sau96I	GGNCC	5 cut(s)	102, 441, 463, 603, 833
SchI	GAGTC	3 cut(s)	314, 401, 767
ScrFI	CCNGG	3 cut(s)	33, 347, 722
SduI	GDGCHC	2 cut(s)	66, 647
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	469
SinI	GGWCC	3 cut(s)	441, 463, 833
SmlI	CTYRAG	2 cut(s)	97, 400
SmoI	CTYRAG	2 cut(s)	97, 400
Sse9I	AATT	5 cut(s)	537, 593, 673, 754, 782
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	31, 345, 720
TaaI	ACNGT	3 cut(s)	256, 825, 837
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	611, 647
TaqII	GACCGA	1 cut(s)	231
TasI	AATT	5 cut(s)	537, 593, 673, 754, 782
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	42, 244
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TseFI	GTSAC	1 cut(s)	665
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	1 cut(s)	560
Van91I	CCANNNNNTGG	1 cut(s)	793
Vha464I	CTTAAG	1 cut(s)	400
VpaK11BI	GGWCC	3 cut(s)	441, 463, 833
XagI	CCTNNNNNAGG	1 cut(s)	97
XapI	RAATTY	2 cut(s)	593, 782
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.