AT1G70630

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012783
Physical Location & Seq
Forward (+)
26631112 .. 26634259
3148 bp
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UTR
Exon/CDS
Intron
AT1G70630.7

Sequence Viewer

Length: 1614 bp
ATGATGTCGAGAATTGAAGCTTATCAATCAGATATAGCTGTTCTAATGGATCCAGAGACTGTTTTACTGCCAGATTTCATATCTGCTTTGAGTTATGCTCACGAGCTTGGTCGTGATTGGCTTCTTGTTTCTTCATCAGTGGAAATTCCCCGTTTCCCGTTCCATTGGGATGAAACTAGACATTTTTGGCGTCAGGACAATGGGAAAAGAGTGAGATTTAGGGAGTTGCAGAAGATGATAAGCTTGCGGAGTTTGCAATCAAATTCTAGCGCAAGCAAAATGATTATGGCATGGAACAACATTGATATGCCCTTGCACTGTGGAGTGCTTCCACCTTTTTTGTATCAAAGAGGTACTCATAATCAATGGATCATTAACGAAGCTATGTCATGTAAAAGAAGGTTTGTGTTTGATGCCACTTCAACCATATCGAGCTTTTTCCTAGGCAATGCAGAGAACATATACAATAGGAGTGATAATGTCTCAGAACCCAAAACGAGAAACTGGGAATATGTAGGAAACTCCCATCTTGGGCAGCTCTATGGTTCATTGTACTCTAGGTCTTATACGCTACCTAAGCTTTTGAAGTGCAACAGACGCTATATCTTTGTTAGCGCTTCAGAGCGTTCCACTGATCTGTCTATACCAAAAGGAAAGAGTTTAGGATTTCGGACACGAGAGAAGATCTCAGCTTGTATCACTAGAACTAAATCGCGGAGCTTGAAATTAGATTTTGTGCAGAAAGATGAGACAGTGCCACCATTGAAGTTTCCTTTTGACCTGGAGTCTCTTCTCCCATTAGTTGCAGACAAAAACAGAACTGTTGTTCTTTCAGTTGCTGGGTATAGCTATAAGGACATGCTGATGAGTTGGGTCTGCAGATTACGCCGCCTCAAAGTTCCAAATTTCTTAGTTTGTGCCCTTGATGATGAAACTTATCAGTTTTCTATTTTGCAGGGTCTGCCAGTTTTCTTTGATCCATACGCTCCAAAGAACATAAGCTTCAATGACTGCCACTTTGGATCAAAGTGTTTCCAGAGAGTGACCAAAGTCAAGTCAAGAACAGTTTTGAAGATACTGAAGCTGGGCTATAACGTTCTCTTGAGTGATGTAGATGTATATTGGTTCAGAAACCCGTTGCCTCTGCTTCAGTCTTTCGGTCCTTCTGTTCTTGCAGCACAATCTGATGAATACAATACAACAGCACCGATAAACCGACCAAGGCGCTTGAACTCAGGATTCTACTTTGCACGTTCTGATAGCCCGACGATAGCAGCGATGGAGAAAGTGGTGAAGCATGCTGCAACCTCCGGTCTTTCGGAGCAACCTAGCTTCTACGATACTTTATGCGGAGAAGGTGGAGCTTATCGCTTGGGAGACGATAGATGTGTTGAACCAGAGACAAATCTGACTGTTCAGTTCTTGGACAGAGAGCTATTCCCAAACGGAGCTTACGGGGATCTATGGCTTAAGGAAGACGTAAGAGCAGAGTGCGAGAAGAAGCATTGCTTTGTTCTACACAACAACTGGATTAGCGGGAGACTGAAGAAACTTGAACGCCAAATGATGAAAGGTCTATGGGAATATGACGCATCCATGAGGATGTGTGTGTAG

Protein Analysis

537

Amino Acids

61.92

Weight (kDa)

9.1

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 436 - 657 1.5e-51 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70630 AT1G70630 AT1G70630 AT1G70630 AT1G70630 AT1G70630 AT1G70630
fragaria_vesca FvH4_4g25550
malus_domestica MD13G1101600.v1.1
prunus_persica Prupe.1G244200_v2.0.a1
pyrus_communis pycom13g08870 pycom16g08670
rosa_chinensis RchiOBHm_Chr4g0432961
rosa_laevigata RLG00000006798
rosa_samantha Rh4AG318200 Rh4BG326300 Rh4CG341600 Rh4DG321500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 715
AciI CCGC 5 cut(s) 247, 715, 889, 1350, 1536
AclI AACGTT 1 cut(s) 1095
AclWI GGATC 6 cut(s) 44, 57, 377, 971, 1030, 1467
AcsI RAATTY 3 cut(s) 144, 262, 904
AcuI CTGAAG 4 cut(s) 603, 1100, 1133, 1565
AcyI GRCGYC 1 cut(s) 190
AfaI GTAC 2 cut(s) 355, 554
AfeI AGCGCT 1 cut(s) 616
AfiI CCNNNNNNNGG 1 cut(s) 531
AflII CTTAAG 1 cut(s) 1469
AhdI GACNNNNNGTC 1 cut(s) 784
AjnI CCWGG 1 cut(s) 780
Alw26I GTCTC 7 cut(s) 50, 487, 743, 792, 1371, 1394, 1534
AlwI GGATC 6 cut(s) 44, 57, 377, 971, 1030, 1467
AlwNI CAGNNNCTG 3 cut(s) 59, 839, 961
Aor51HI AGCGCT 1 cut(s) 616
ApeKI GCWGC 4 cut(s) 535, 1175, 1274, 1301
ApoI RAATTY 3 cut(s) 144, 262, 904
ArsI GACNNNNNNTTYG 2 cut(s) 1001, 1033
AspA2I CCTAGG 1 cut(s) 442
AspLEI GCGC 3 cut(s) 272, 617, 1227
AspS9I GGNCC 1 cut(s) 1160
AsuHPI GGTGA 1 cut(s) 1303
AvaII GGWCC 1 cut(s) 1160
AvrII CCTAGG 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 922
BamHI GGATCC 1 cut(s) 49
BauI CACGAG 2 cut(s) 101, 675
BbsI GAAGAC 1 cut(s) 1482
BbvI GCAGC 4 cut(s) 547, 1187, 1286, 1288
BccI CCATC 2 cut(s) 534, 1273
BciT130I CCWGG 1 cut(s) 782
BcoDI GTCTC 7 cut(s) 50, 487, 743, 792, 1371, 1394, 1534
BfaI CTAG 6 cut(s) 177, 267, 443, 558, 702, 1329
BfmI CTRYAG 1 cut(s) 877
BfoI RGCGCY 2 cut(s) 618, 1228
BfrI CTTAAG 1 cut(s) 1469
BglII AGATCT 1 cut(s) 684
BisI GCNGC 5 cut(s) 536, 889, 1176, 1275, 1302
BlnI CCTAGG 1 cut(s) 442
BlsI GCNGC 5 cut(s) 537, 890, 1177, 1276, 1303
Bme1390I CCNGG 1 cut(s) 782
Bme18I GGWCC 1 cut(s) 1160
BmeRI GACNNNNNGTC 1 cut(s) 784
BmgT120I GGNCC 1 cut(s) 1160
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 782
BmrI ACTGGG 1 cut(s) 514
BmsI GCATC 2 cut(s) 403, 1601
BmuI ACTGGG 1 cut(s) 514
BoxI GACNNNNGTC 1 cut(s) 1049
BpiI GAAGAC 1 cut(s) 1482
BplI GAGNNNNNCTC 4 cut(s) 82, 114, 671, 703
BpmI CTGGAG 1 cut(s) 803
Bpu10I CCTNAGC 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 1123
BsaHI GRCGYC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 442, 1220
BsaWI WCCGGW 1 cut(s) 1310
Bsc4I CCNNNNNNNGG 1 cut(s) 531
Bse1I ACTGG 3 cut(s) 509, 965, 1532
Bse3DI GCAATG 2 cut(s) 454, 1504
BseBI CCWGG 1 cut(s) 782
BseDI CCNNGG 2 cut(s) 442, 1220
BseGI GGATG 3 cut(s) 175, 1592, 1608
BseLI CCNNNNNNNGG 1 cut(s) 531
BseMI GCAATG 2 cut(s) 454, 1504
BseMII CTCAG 3 cut(s) 498, 702, 1248
BseNI ACTGG 3 cut(s) 509, 965, 1532
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 4 cut(s) 547, 1187, 1286, 1288
BseYI CCCAGC 2 cut(s) 839, 1084
BsgI GTGCAG 1 cut(s) 758
Bsh1236I CGCG 1 cut(s) 715
BsiSI CCGG 1 cut(s) 1311
BslI CCNNNNNNNGG 1 cut(s) 531
BsmAI GTCTC 7 cut(s) 50, 487, 743, 792, 1371, 1394, 1534
BsmBI CGTCTC 1 cut(s) 1371
Bsp1286I GDGCHC 1 cut(s) 922
Bsp143I GATC 7 cut(s) 49, 369, 634, 684, 976, 1022, 1459
BspACI CCGC 5 cut(s) 247, 715, 889, 1350, 1536
BspCNI CTCAG 3 cut(s) 497, 701, 1247
BspFNI CGCG 1 cut(s) 715
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 881
BspPI GGATC 6 cut(s) 44, 57, 377, 971, 1030, 1467
BspTI CTTAAG 1 cut(s) 1469
BsrDI GCAATG 2 cut(s) 454, 1504
BsrI ACTGG 3 cut(s) 509, 965, 1532
BssECI CCNNGG 2 cut(s) 442, 1220
BssMI GATC 7 cut(s) 49, 369, 634, 684, 976, 1022, 1459
BssNI GRCGYC 1 cut(s) 190
BssSI CACGAG 2 cut(s) 101, 675
BssT1I CCWWGG 2 cut(s) 442, 1220
Bst2BI CACGAG 2 cut(s) 101, 675
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 6 cut(s) 61, 320, 754, 823, 1066, 1414
Bst6I CTCTTC 1 cut(s) 795
BstACI GRCGYC 1 cut(s) 190
BstAFI CTTAAG 1 cut(s) 1469
BstAPI GCANNNNNTGC 1 cut(s) 961
BstC8I GCNNGC 3 cut(s) 245, 274, 1299
BstDEI CTNAG 5 cut(s) 484, 576, 688, 910, 1234
BstF5I GGATG 3 cut(s) 175, 1592, 1608
BstFNI CGCG 1 cut(s) 715
BstH2I RGCGCY 2 cut(s) 618, 1228
BstHHI GCGC 3 cut(s) 272, 617, 1227
BstKTI GATC 7 cut(s) 52, 372, 637, 687, 979, 1025, 1462
BstMAI GTCTC 7 cut(s) 50, 487, 743, 792, 1371, 1394, 1534
BstMBI GATC 7 cut(s) 49, 369, 634, 684, 976, 1022, 1459
BstMWI GCNNNNNNNGC 5 cut(s) 253, 577, 597, 885, 961
BstNI CCWGG 1 cut(s) 782
BstNSI RCATGY 2 cut(s) 862, 1301
BstPAI GACNNNNGTC 1 cut(s) 1049
BstSCI CCNGG 1 cut(s) 780
BstSFI CTRYAG 1 cut(s) 877
BstSLI GKGCMC 1 cut(s) 922
BstUI CGCG 1 cut(s) 715
BstV1I GCAGC 4 cut(s) 547, 1187, 1286, 1288
BstV2I GAAGAC 1 cut(s) 1482
BstX2I RGATCY 3 cut(s) 49, 684, 1459
BstYI RGATCY 3 cut(s) 49, 684, 1459
BtgZI GCGATG 1 cut(s) 1292
BtsCI GGATG 3 cut(s) 175, 1592, 1608
BtsIMutI CAGTG 4 cut(s) 144, 316, 630, 759
Cac8I GCNNGC 3 cut(s) 245, 274, 1299
CaiI CAGNNNCTG 3 cut(s) 59, 839, 961
CfoI GCGC 3 cut(s) 272, 617, 1227
Cfr13I GGNCC 1 cut(s) 1160
CseI GACGC 3 cut(s) 179, 606, 1598
Csp6I GTAC 2 cut(s) 354, 553
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CviAII CATG 5 cut(s) 291, 390, 859, 1298, 1597
CviQI GTAC 2 cut(s) 354, 553
DdeI CTNAG 5 cut(s) 484, 576, 688, 910, 1234
DpnI GATC 7 cut(s) 51, 371, 636, 686, 978, 1024, 1461
DpnII GATC 7 cut(s) 49, 369, 634, 684, 976, 1022, 1459
DriI GACNNNNNGTC 1 cut(s) 784
Eam1104I CTCTTC 1 cut(s) 795
Eam1105I GACNNNNNGTC 1 cut(s) 784
EarI CTCTTC 1 cut(s) 795
Eco130I CCWWGG 2 cut(s) 442, 1220
Eco47I GGWCC 1 cut(s) 1160
Eco47III AGCGCT 1 cut(s) 616
Eco57I CTGAAG 4 cut(s) 603, 1100, 1133, 1565
EcoRII CCWGG 1 cut(s) 780
EcoT14I CCWWGG 2 cut(s) 442, 1220
ErhI CCWWGG 2 cut(s) 442, 1220
Esp3I CGTCTC 1 cut(s) 1371
FaeI CATG 5 cut(s) 294, 393, 862, 1301, 1600
FalI AAGNNNNNCTT 2 cut(s) 1493, 1525
FatI CATG 5 cut(s) 290, 389, 858, 1297, 1596
FauI CCCGC 1 cut(s) 1529
Fnu4HI GCNGC 5 cut(s) 536, 889, 1176, 1275, 1302
FokI GGATG 2 cut(s) 182, 1579
Fsp4HI GCNGC 5 cut(s) 536, 889, 1176, 1275, 1302
FspBI CTAG 6 cut(s) 177, 267, 443, 558, 702, 1329
GlaI GCGC 3 cut(s) 271, 616, 1226
GluI GCNGC 5 cut(s) 536, 889, 1176, 1275, 1302
GsaI CCCAGC 2 cut(s) 843, 1088
GsuI CTGGAG 1 cut(s) 803
HaeII RGCGCY 2 cut(s) 618, 1228
HapII CCGG 1 cut(s) 1311
HgaI GACGC 3 cut(s) 179, 606, 1598
HhaI GCGC 3 cut(s) 272, 617, 1227
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 5 cut(s) 294, 393, 862, 1301, 1600
Hin6I GCGC 3 cut(s) 270, 615, 1225
HinP1I GCGC 3 cut(s) 270, 615, 1225
HindIII AAGCTT 4 cut(s) 18, 241, 578, 1000
HinfI GANTC 2 cut(s) 785, 1239
HpaII CCGG 1 cut(s) 1311
HphI GGTGA 1 cut(s) 1303
Hpy188I TCNGA 9 cut(s) 31, 487, 622, 672, 1130, 1186, 1258, 1321, 1410
Hpy188III TCNNGA 9 cut(s) 9, 53, 101, 113, 194, 1036, 1059, 1102, 1236
Hpy99I CGWCG 1 cut(s) 1270
HpyAV CCTTC 3 cut(s) 393, 1173, 1349
HpyCH4III ACNGT 6 cut(s) 61, 320, 754, 823, 1066, 1414
HpyCH4IV ACGT 3 cut(s) 1095, 1252, 1479
HpyF10VI GCNNNNNNNGC 5 cut(s) 253, 577, 597, 885, 961
HpyF3I CTNAG 5 cut(s) 484, 576, 688, 910, 1234
HpySE526I ACGT 3 cut(s) 1095, 1252, 1479
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 5 cut(s) 294, 393, 862, 1301, 1600
HspAI GCGC 3 cut(s) 270, 615, 1225
Kzo9I GATC 7 cut(s) 49, 369, 634, 684, 976, 1022, 1459
LmnI GCTCC 5 cut(s) 717, 991, 1321, 1361, 1448
Lsp1109I GCAGC 4 cut(s) 547, 1187, 1286, 1288
LweI GCATC 2 cut(s) 403, 1601
MaeI CTAG 6 cut(s) 177, 267, 443, 558, 702, 1329
MaeII ACGT 3 cut(s) 1095, 1252, 1479
MaeIII GTNAC 1 cut(s) 1042
MalI GATC 7 cut(s) 51, 371, 636, 686, 978, 1024, 1461
MboI GATC 7 cut(s) 49, 369, 634, 684, 976, 1022, 1459
MboII GAAGA 8 cut(s) 123, 244, 694, 782, 1084, 1487, 1510, 1558
MflI RGATCY 3 cut(s) 49, 684, 1459
MhlI GDGCHC 1 cut(s) 922
MluCI AATT 5 cut(s) 12, 144, 262, 725, 904
MlyI GAGTC 1 cut(s) 794
MnlI CCTC 5 cut(s) 344, 902, 1152, 1318, 1593
MseI TTAA 2 cut(s) 375, 1470
MslI CAYNNNNRTG 4 cut(s) 168, 305, 863, 1601
MspCI CTTAAG 1 cut(s) 1469
MspI CCGG 1 cut(s) 1311
MspR9I CCNGG 1 cut(s) 782
MvaI CCWGG 1 cut(s) 782
MvnI CGCG 1 cut(s) 715
MwoI GCNNNNNNNGC 5 cut(s) 253, 577, 597, 885, 961
NdeII GATC 7 cut(s) 49, 369, 634, 684, 976, 1022, 1459
NlaIII CATG 5 cut(s) 294, 393, 862, 1301, 1600
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 1042
NspI RCATGY 2 cut(s) 862, 1301
PaeI GCATGC 1 cut(s) 1301
PcsI WCGNNNNNNNCGW 1 cut(s) 1274
PfeI GAWTC 1 cut(s) 1239
PkrI GCNGC 5 cut(s) 537, 890, 1177, 1276, 1303
PleI GAGTC 1 cut(s) 793
PpsI GAGTC 1 cut(s) 793
PshAI GACNNNNGTC 1 cut(s) 1049
Psp1406I AACGTT 1 cut(s) 1095
Psp6I CCWGG 1 cut(s) 780
PspFI CCCAGC 2 cut(s) 839, 1084
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 1160
PstI CTGCAG 1 cut(s) 881
PstNI CAGNNNCTG 3 cut(s) 59, 839, 961
PsuI RGATCY 3 cut(s) 49, 684, 1459
RsaI GTAC 2 cut(s) 355, 554
RsaNI GTAC 2 cut(s) 354, 553
RseI CAYNNNNRTG 4 cut(s) 168, 305, 863, 1601
SaqAI TTAA 2 cut(s) 375, 1470
SatI GCNGC 5 cut(s) 536, 889, 1176, 1275, 1302
Sau3AI GATC 7 cut(s) 49, 369, 634, 684, 976, 1022, 1459
Sau96I GGNCC 1 cut(s) 1160
SchI GAGTC 1 cut(s) 794
ScrFI CCNGG 1 cut(s) 782
SduI GDGCHC 1 cut(s) 922
SfaNI GCATC 2 cut(s) 403, 1601
SfcI CTRYAG 1 cut(s) 877
SinI GGWCC 1 cut(s) 1160
SmiMI CAYNNNNRTG 4 cut(s) 168, 305, 863, 1601
SmlI CTYRAG 2 cut(s) 1102, 1469
SmoI CTYRAG 2 cut(s) 1102, 1469
SphI GCATGC 1 cut(s) 1301
Sse9I AATT 5 cut(s) 12, 144, 262, 725, 904
SsiI CCGC 5 cut(s) 247, 715, 889, 1350, 1536
SspMI CTAG 6 cut(s) 177, 267, 443, 558, 702, 1329
StyD4I CCNGG 1 cut(s) 780
StyI CCWWGG 2 cut(s) 442, 1220
TaaI ACNGT 6 cut(s) 61, 320, 754, 823, 1066, 1414
TaiI ACGT 3 cut(s) 1098, 1255, 1482
TaqI TCGA 2 cut(s) 8, 431
TaqII GACCGA 1 cut(s) 1148
TasI AATT 5 cut(s) 12, 144, 262, 725, 904
TatI WGTACW 1 cut(s) 552
TauI GCSGC 1 cut(s) 891
TfiI GAWTC 1 cut(s) 1239
Tru1I TTAA 2 cut(s) 375, 1470
Tru9I TTAA 2 cut(s) 375, 1470
TscAI CASTG 4 cut(s) 144, 323, 637, 759
TseFI GTSAC 1 cut(s) 1042
TseI GCWGC 4 cut(s) 535, 1175, 1274, 1301
Tsp45I GTSAC 1 cut(s) 1042
TspDTI ATGAA 7 cut(s) 67, 123, 186, 537, 945, 1203, 1583
TspGWI ACGGA 1 cut(s) 1461
TspRI CASTG 4 cut(s) 144, 323, 637, 759
Vha464I CTTAAG 1 cut(s) 1469
VpaK11BI GGWCC 1 cut(s) 1160
XapI RAATTY 3 cut(s) 144, 262, 904
XceI RCATGY 2 cut(s) 862, 1301
XmaJI CCTAGG 1 cut(s) 442
XspI CTAG 6 cut(s) 177, 267, 443, 558, 702, 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.