AT1G71440

CAP_GLY

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
26921060 .. 26924431
3372 bp
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UTR
Exon/CDS
Intron
AT1G71440.1

Sequence Viewer

Length: 1596 bp
ATGAAGGCTGAGTCTAGCAACGAGTCTTTCATAATCGGGCAGCGAGTCCACTCTCTCAACGATTCGCGTCGTGTGGGCACCGTGAAATACGTCGGAGATGTGGAGGGATACTCCGGAACTTGGATCGGCGTTGATTGGGATCAAGACGGTGATGGAAAACATAACGGTTCCGTCAATGGCGTTTTCTACTTTAACGGTCGTTCTCAGAGCTCAGCTTCATTTGTTCGTTCCCAGAATCTTAGTCGCGGTATCACATTGCTTCAAGCTTTGGAGCTTAGATACAGAACAATTTCAACTAAGGACGAAGAAGATGAAATGTATGTTCTCTCTGCTGGGAATAGACGTGTTTCGATTCAGCTTTTAGGAGGGGATAAGATCCAGGATAAGTTAAGTCGGTTCGAGGAGCTTACGAGTGCTTCTCTTTCGTATCTTGGTGTTAGTTCTCTTGGAGTTTCATCTGATTTGGGTTCAATTCTACCAAATTTGAAGCTGCTGGACTTAACTGGAAACTTGATTTCTGACTGGGAGGAGATTGGTGCTCTTTGTGAACAGTTACCAGCACTTACAACCCTTAATTTGTCTTGCAATTCTTTGTCAAGTGATATCAAGTCTCTGCCACAGTTAAAAAATATCCGTGTTTTGGTTCTGAATAATAGTGGTCTGAGCTGGACTCAGGTTGAAATTCTTAGGCGCTCGTTACCTGGAATTGAGGAGTTGCATCTGATGGGGAACATGATATCTACCATAACATCCACGTCCTCATCAGATGATCAAGCATTTAACTCTCTGCGGCTACTGAACTTGGATGATAATTGTATTTCCGATTGGAGTGAAGTATTAAAGCTATCTCAACTTCCATGCTTGGAGCAGCTTTACCTGAATAAGAATAAGCTTTCACGCATCTTTCAGTCTGTAAATGGCACTGAATCATCAGAGAAAGGCAGCGACCCATTTCCTAGTCTGAGTTGTCTTCTTCTAGGAGCCAACAACATTGGCGATTTGGCCTCAGTAGACGCACTGAATGGGTTTCCTCAGTTAGTGGACATCAGGCTTTCGGAAAACCCAATATCTGATCCTGTAAGAGGTGGTGTCCCAAGATTTGTTCTCGTTGCAAGGTTGACAAAAGTACAAGTGCTGAATGGGAGTGAGGTAAGAGCTCGTGAGAAGAAGGATTCTGAGATCCGGTATGTCCGAATGGTGATGTCAAAGTTAAATGACAAGTCTGGGGAGATTGAGCTGCTCCACCCTAGATTTTATGAACTCAAGAAACTTCATGGAATTGAGGACGAAAGAGCATCAGCTGAGAACAGCGGCCCTAAGAATATAGCATCTGGACTTATCTCCATTACTCTCAAATGCGTTGGTCCATCAATGGGTGAAAAACCTCACTTGACAAAGAAGTTACCGGGCAGTATCACGGTTGGAAAGCTGAAGATCTTATCTGAGAACTTTTTCAAGCTCAAGTCCATCAAGCCAAGATTATTTCTGCAGGAAGAGGGCTCACCTTTTCCGACAGCACTCGATGACGAGACTGCAACATTACTTGACGTTGGAATCTGCGACGGCTCCACACTTCTTGTTGACGAAGAGAGTTAA

Protein Analysis

531

Amino Acids

58.24

Weight (kDa)

5.31

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP_GLY PF01302 12 - 79 1.7e-18 CAP-Gly domain
LRR_9 PF14580 238 - 393 1.9e-09 Leucine-rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccI GTMKAC 1 cut(s) 1011
AccII CGCG 2 cut(s) 67, 246
AccIII TCCGGA 1 cut(s) 113
AciI CCGC 3 cut(s) 246, 790, 1311
AclWI GGATC 5 cut(s) 131, 147, 370, 1067, 1174
AcsI RAATTY 2 cut(s) 481, 681
AcuI CTGAAG 1 cut(s) 1451
AfaI GTAC 1 cut(s) 1128
AfiI CCNNNNNNNGG 4 cut(s) 120, 640, 1082, 1373
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 6 cut(s) 263, 294, 471, 487, 680, 1456
AjiI CACGTC 2 cut(s) 344, 756
AjnI CCWGG 2 cut(s) 378, 700
Alw21I GWGCWC 3 cut(s) 212, 541, 1159
Alw26I GTCTC 2 cut(s) 615, 1523
AlwI GGATC 5 cut(s) 131, 147, 370, 1067, 1174
Aor13HI TCCGGA 1 cut(s) 113
AoxI GGCC 2 cut(s) 1002, 1312
ApeKI GCWGC 5 cut(s) 40, 490, 868, 942, 1237
ApoI RAATTY 2 cut(s) 481, 681
Asp700I GAANNNNTTC 2 cut(s) 289, 1451
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 2 cut(s) 1313, 1364
AsuC2I CCSGG 1 cut(s) 1407
AsuHPI GGTGA 4 cut(s) 161, 1210, 1388, 1494
AvaII GGWCC 1 cut(s) 1364
BaeGI GKGCMC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 3 cut(s) 212, 1159, 1502
BauI CACGAG 1 cut(s) 1158
BbsI GAAGAC 1 cut(s) 962
Bbv12I GWGCWC 3 cut(s) 212, 541, 1159
BbvI GCAGC 5 cut(s) 52, 477, 880, 954, 1224
BccI CCATC 4 cut(s) 146, 718, 1375, 1475
BceAI ACGGC 1 cut(s) 1579
BciT130I CCWGG 2 cut(s) 380, 702
BciVI GTATCC 1 cut(s) 101
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 1407
BcoDI GTCTC 2 cut(s) 615, 1523
BfaI CTAG 4 cut(s) 15, 957, 977, 1248
BfmI CTRYAG 1 cut(s) 1487
BfoI RGCGCY 1 cut(s) 694
BfuI GTATCC 1 cut(s) 101
BglII AGATCT 1 cut(s) 1434
BisI GCNGC 7 cut(s) 41, 491, 791, 869, 943, 1238, 1312
BlpI GCTNAGC 1 cut(s) 211
BlsI GCNGC 7 cut(s) 42, 492, 792, 870, 944, 1239, 1313
Bme1390I CCNGG 3 cut(s) 380, 702, 1407
Bme18I GGWCC 1 cut(s) 1364
BmgBI CACGTC 2 cut(s) 344, 756
BmgT120I GGNCC 2 cut(s) 1313, 1364
BmiI GGNNCC 4 cut(s) 79, 169, 982, 1567
BmrFI CCNGG 3 cut(s) 380, 702, 1407
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 4 cut(s) 727, 909, 1304, 1337
BmuI ACTGGG 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 962
BplI GAGNNNNNCTC 6 cut(s) 95, 127, 403, 435, 655, 687
Bpu1102I GCTNAGC 1 cut(s) 211
BpuEI CTTGAG 2 cut(s) 1247, 1445
BpuMI CCSGG 1 cut(s) 1407
BsaBI GATNNNNATC 1 cut(s) 138
BsaWI WCCGGW 2 cut(s) 113, 1182
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 640, 1082, 1373
Bse1I ACTGG 2 cut(s) 508, 527
Bse3DI GCAATG 1 cut(s) 254
Bse8I GATNNNNATC 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 113
BseBI CCWGG 2 cut(s) 380, 702
BseGI GGATG 2 cut(s) 749, 811
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 4 cut(s) 120, 640, 1082, 1373
BseMI GCAATG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 508, 527
BseRI GAGGAG 3 cut(s) 416, 542, 725
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 5 cut(s) 52, 477, 880, 954, 1224
BseYI CCCAGC 1 cut(s) 332
Bsh1236I CGCG 2 cut(s) 67, 246
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 2 cut(s) 1004, 1314
BshNI GGYRCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 3 cut(s) 212, 541, 1159
BsiSI CCGG 3 cut(s) 114, 1183, 1406
BslFI GGGAC 1 cut(s) 1076
BslI CCNNNNNNNGG 4 cut(s) 120, 640, 1082, 1373
BsmAI GTCTC 2 cut(s) 615, 1523
BsmFI GGGAC 1 cut(s) 1076
BsnI GGCC 2 cut(s) 1004, 1314
Bsp1286I GDGCHC 5 cut(s) 80, 212, 541, 1159, 1502
Bsp13I TCCGGA 1 cut(s) 113
Bsp143I GATC 7 cut(s) 123, 139, 375, 769, 1072, 1179, 1434
Bsp1720I GCTNAGC 1 cut(s) 211
BspACI CCGC 3 cut(s) 246, 790, 1311
BspANI GGCC 2 cut(s) 1004, 1314
BspEI TCCGGA 1 cut(s) 113
BspFNI CGCG 2 cut(s) 67, 246
BspLI GGNNCC 4 cut(s) 79, 169, 982, 1567
BspMAI CTGCAG 1 cut(s) 1491
BspPI GGATC 5 cut(s) 131, 147, 370, 1067, 1174
BspT107I GGYRCC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 254
BsrI ACTGG 2 cut(s) 508, 527
BssMI GATC 7 cut(s) 123, 139, 375, 769, 1072, 1179, 1434
BssSI CACGAG 1 cut(s) 1158
Bst2BI CACGAG 1 cut(s) 1158
Bst2UI CCWGG 2 cut(s) 380, 702
Bst4CI ACNGT 7 cut(s) 82, 149, 167, 197, 552, 621, 1420
Bst6I CTCTTC 2 cut(s) 1488, 1581
BstENI CCTNNNNNAGG 1 cut(s) 1080
BstF5I GGATG 2 cut(s) 749, 811
BstFNI CGCG 2 cut(s) 67, 246
BstH2I RGCGCY 1 cut(s) 694
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 7 cut(s) 126, 142, 378, 772, 1075, 1182, 1437
BstMAI GTCTC 2 cut(s) 615, 1523
BstMBI GATC 7 cut(s) 123, 139, 375, 769, 1072, 1179, 1434
BstMCI CGRYCG 1 cut(s) 199
BstNI CCWGG 2 cut(s) 380, 702
BstSCI CCNGG 3 cut(s) 378, 700, 1405
BstSFI CTRYAG 1 cut(s) 1487
BstSLI GKGCMC 1 cut(s) 80
BstUI CGCG 2 cut(s) 67, 246
BstV1I GCAGC 5 cut(s) 52, 477, 880, 954, 1224
BstV2I GAAGAC 1 cut(s) 962
BstX2I RGATCY 3 cut(s) 375, 1179, 1434
BstYI RGATCY 3 cut(s) 375, 1179, 1434
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 2 cut(s) 1004, 1314
BtrI CACGTC 2 cut(s) 344, 756
BtsCI GGATG 2 cut(s) 749, 811
BtsIMutI CAGTG 2 cut(s) 921, 1016
CfoI GCGC 1 cut(s) 693
Cfr13I GGNCC 2 cut(s) 1313, 1364
CseI GACGC 2 cut(s) 56, 1022
Csp6I GTAC 1 cut(s) 1127
CspCI CAANNNNNGTGG 2 cut(s) 1558, 1593
CviAII CATG 3 cut(s) 733, 858, 1274
CviQI GTAC 1 cut(s) 1127
DpnI GATC 7 cut(s) 125, 141, 377, 771, 1074, 1181, 1436
DpnII GATC 7 cut(s) 123, 139, 375, 769, 1072, 1179, 1434
Eam1104I CTCTTC 2 cut(s) 1488, 1581
EarI CTCTTC 2 cut(s) 1488, 1581
Ecl136II GAGCTC 2 cut(s) 210, 1157
Eco24I GRGCYC 3 cut(s) 212, 1159, 1502
Eco32I GATATC 2 cut(s) 604, 738
Eco47I GGWCC 1 cut(s) 1364
Eco53kI GAGCTC 2 cut(s) 210, 1157
Eco57I CTGAAG 1 cut(s) 1451
EcoICRI GAGCTC 2 cut(s) 210, 1157
EcoNI CCTNNNNNAGG 1 cut(s) 1080
EcoRII CCWGG 2 cut(s) 378, 700
EcoRV GATATC 2 cut(s) 604, 738
EcoT38I GRGCYC 3 cut(s) 212, 1159, 1502
FaeI CATG 3 cut(s) 736, 861, 1277
FaqI GGGAC 1 cut(s) 1076
FatI CATG 3 cut(s) 732, 857, 1273
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 1011
Fnu4HI GCNGC 7 cut(s) 41, 491, 791, 869, 943, 1238, 1312
FokI GGATG 2 cut(s) 736, 818
FriOI GRGCYC 3 cut(s) 212, 1159, 1502
Fsp4HI GCNGC 7 cut(s) 41, 491, 791, 869, 943, 1238, 1312
FspBI CTAG 4 cut(s) 15, 957, 977, 1248
GlaI GCGC 1 cut(s) 692
GluI GCNGC 7 cut(s) 41, 491, 791, 869, 943, 1238, 1312
GsaI CCCAGC 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 694
HaeIII GGCC 2 cut(s) 1004, 1314
HapII CCGG 3 cut(s) 114, 1183, 1406
HgaI GACGC 2 cut(s) 56, 1022
HhaI GCGC 1 cut(s) 693
Hin1II CATG 3 cut(s) 736, 861, 1277
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HincII GTYRAC 2 cut(s) 1119, 1582
HindII GTYRAC 2 cut(s) 1119, 1582
HindIII AAGCTT 2 cut(s) 264, 890
HpaII CCGG 3 cut(s) 114, 1183, 1406
HphI GGTGA 4 cut(s) 161, 1210, 1388, 1494
Hpy166II GTNNAC 6 cut(s) 49, 548, 1012, 1042, 1119, 1582
Hpy188III TCNNGA 5 cut(s) 114, 143, 1160, 1264, 1332
Hpy8I GTNNAC 6 cut(s) 49, 548, 1012, 1042, 1119, 1582
Hpy99I CGWCG 3 cut(s) 72, 95, 1565
HpyAV CCTTC 1 cut(s) 1162
HpyCH4III ACNGT 7 cut(s) 82, 149, 167, 197, 552, 621, 1420
HpyCH4IV ACGT 4 cut(s) 90, 343, 755, 1548
HpyCH4V TGCA 5 cut(s) 585, 718, 1112, 1489, 1535
HpySE526I ACGT 4 cut(s) 90, 343, 755, 1548
Hsp92II CATG 3 cut(s) 736, 861, 1277
HspAI GCGC 1 cut(s) 691
Kpn2I TCCGGA 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 7 cut(s) 123, 139, 375, 769, 1072, 1179, 1434
LmnI GCTCC 6 cut(s) 271, 403, 865, 980, 1245, 1571
Lsp1109I GCAGC 5 cut(s) 52, 477, 880, 954, 1224
LweI GCATC 4 cut(s) 727, 909, 1304, 1337
MaeI CTAG 4 cut(s) 15, 957, 977, 1248
MaeII ACGT 4 cut(s) 90, 343, 755, 1548
MaeIII GTNAC 3 cut(s) 552, 696, 1401
MalI GATC 7 cut(s) 125, 141, 377, 771, 1074, 1181, 1436
MboI GATC 7 cut(s) 123, 139, 375, 769, 1072, 1179, 1434
MboII GAAGA 7 cut(s) 317, 320, 962, 965, 1177, 1444, 1505
MflI RGATCY 3 cut(s) 375, 1179, 1434
MhlI GDGCHC 5 cut(s) 80, 212, 541, 1159, 1502
MluCI AATT 9 cut(s) 288, 471, 481, 574, 586, 681, 705, 811, 1278
MlyI GAGTC 4 cut(s) 20, 32, 54, 664
MmeI TCCRAC 4 cut(s) 73, 1402, 1531, 1535
MroI TCCGGA 1 cut(s) 113
MroXI GAANNNNTTC 2 cut(s) 289, 1451
MseI TTAA 9 cut(s) 192, 389, 500, 573, 623, 780, 839, 1211, 1594
MspA1I CMGCKG 2 cut(s) 1301, 1311
MspI CCGG 3 cut(s) 114, 1183, 1406
MspR9I CCNGG 3 cut(s) 380, 702, 1407
MvaI CCWGG 2 cut(s) 380, 702
MvnI CGCG 2 cut(s) 67, 246
NciI CCSGG 1 cut(s) 1407
NdeII GATC 7 cut(s) 123, 139, 375, 769, 1072, 1179, 1434
NlaIII CATG 3 cut(s) 736, 861, 1277
NlaIV GGNNCC 4 cut(s) 79, 169, 982, 1567
PdmI GAANNNNTTC 2 cut(s) 289, 1451
PfeI GAWTC 6 cut(s) 62, 235, 352, 926, 1172, 1554
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 7 cut(s) 42, 492, 792, 870, 944, 1239, 1313
PleI GAGTC 4 cut(s) 19, 31, 53, 664
PpsI GAGTC 4 cut(s) 19, 31, 53, 664
Psp124BI GAGCTC 2 cut(s) 212, 1159
Psp6I CCWGG 2 cut(s) 378, 700
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 2 cut(s) 378, 700
PspN4I GGNNCC 4 cut(s) 79, 169, 982, 1567
PspPI GGNCC 2 cut(s) 1313, 1364
PstI CTGCAG 1 cut(s) 1491
PsuI RGATCY 3 cut(s) 375, 1179, 1434
PvuII CAGCTG 1 cut(s) 1301
RsaI GTAC 1 cut(s) 1128
RsaNI GTAC 1 cut(s) 1127
SacI GAGCTC 2 cut(s) 212, 1159
SaqAI TTAA 9 cut(s) 192, 389, 500, 573, 623, 780, 839, 1211, 1594
SatI GCNGC 7 cut(s) 41, 491, 791, 869, 943, 1238, 1312
Sau3AI GATC 7 cut(s) 123, 139, 375, 769, 1072, 1179, 1434
Sau96I GGNCC 2 cut(s) 1313, 1364
SchI GAGTC 4 cut(s) 20, 32, 54, 664
ScrFI CCNGG 3 cut(s) 380, 702, 1407
SduI GDGCHC 5 cut(s) 80, 212, 541, 1159, 1502
SfaNI GCATC 4 cut(s) 727, 909, 1304, 1337
SfcI CTRYAG 1 cut(s) 1487
SinI GGWCC 1 cut(s) 1364
SmlI CTYRAG 2 cut(s) 1262, 1460
SmoI CTYRAG 2 cut(s) 1262, 1460
Sse9I AATT 9 cut(s) 288, 471, 481, 574, 586, 681, 705, 811, 1278
SsiI CCGC 3 cut(s) 246, 790, 1311
SspMI CTAG 4 cut(s) 15, 957, 977, 1248
SstI GAGCTC 2 cut(s) 212, 1159
StyD4I CCNGG 3 cut(s) 378, 700, 1405
TaaI ACNGT 7 cut(s) 82, 149, 167, 197, 552, 621, 1420
TaiI ACGT 4 cut(s) 93, 346, 758, 1551
TaqI TCGA 3 cut(s) 350, 399, 1521
TasI AATT 9 cut(s) 288, 471, 481, 574, 586, 681, 705, 811, 1278
TatI WGTACW 1 cut(s) 1126
TauI GCSGC 2 cut(s) 793, 1314
TfiI GAWTC 6 cut(s) 62, 235, 352, 926, 1172, 1554
Tru1I TTAA 9 cut(s) 192, 389, 500, 573, 623, 780, 839, 1211, 1594
Tru9I TTAA 9 cut(s) 192, 389, 500, 573, 623, 780, 839, 1211, 1594
TscAI CASTG 2 cut(s) 928, 1023
TseI GCWGC 5 cut(s) 40, 490, 868, 942, 1237
TspDTI ATGAA 7 cut(s) 17, 19, 207, 327, 444, 1262, 1272
TspGWI ACGGA 2 cut(s) 160, 623
TspRI CASTG 2 cut(s) 928, 1023
VpaK11BI GGWCC 1 cut(s) 1364
XagI CCTNNNNNAGG 1 cut(s) 1080
XapI RAATTY 2 cut(s) 481, 681
XmiI GTMKAC 1 cut(s) 1011
XmnI GAANNNNTTC 2 cut(s) 289, 1451
XspI CTAG 4 cut(s) 15, 957, 977, 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.