MD15G1395400.v1.1

Tubulin-specific chaperone

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
49498242 .. 49512875
14634 bp
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UTR
Exon/CDS
Intron
MD15G1395400.v1.1.491

Sequence Viewer

Length: 1605 bp
ATGCCTGATTTCAGACTCGGGCAGCGAGTCCACTCAGCGGGCGATCCCCGTCGAATTGGGACGGTCAGGTACTTGGGGCCTGTCCAAGGGTATTCGGGCACATGGGTCGGAGTCGATTGGGACAGCGGAGAGGGCAAGCACGATGGCTCCATCAACGAGGTTCGTTACTTCCAGGCAACCTCCGACCGATCCGGGTCCTTTGTTCGGTCCCAGAATCTCAGCTCTGGCATTACGTTGCTGCAAGCTATCCAGCTCCGATACCGAGGTGACACCACTCAAGAAGAAGAGGATGAAATGTATGTCCTTTCATCGAGCAACAAGCGTGTCAATGTTCAACTTGTTGGAAAAGACAAAATTCAAGACAAGCTAAGTCGATTAGAGGAGTTGACAAGTGCATCTGTATCTTTTCTGGGTGTTAGCTCTCCTGGAGACCCGTGTGATATTCGTACTAATGTTCCAAATTTGAAGGAGCTTGACTTGACTGGAAATCTAATTTCAGATTGGAAGGATGTTAGCACGATCTGCGAACAGTTGCCGGATCTTTTTGCCCTCAATTTATCTTACAATTCAATGGCACAAGATATTGTTGGGTTGCCACATTTAAAATGTATTCACATTTTAGTGTTAAACAACATTGGCATAAATTGGACCCAGGTTGAAATACTTAAACACTCTTTGCCAGAAATTGAAGAACTACATCTTATGGGGAATAAAATAAGCACCATAGAGCCTGCATCATCTTATGCAGTTCAGGGATTTGATCACTTGCGGCTTCTGAATCTGGAAGACAACTGTATAGCTGATTGGAACGAAATCTTGAAACTTTCCCATCTAAAATGCTTGGAGCAGCTTCATTTGAGCAATAACAATTTGAACCGAGTCTTTTATCCTGATGATGGCTTGATGCATGAACTGCTAAATGGTTATGAATCACCCGAGAAAAACCATAAGCCATTTCAAAATTTGCGTTGCCTTCTTCTTGGGGGCAACAACATTGAGGATCTTGCTTCTGTTGACTCGCTAAACTCATTCCCACAACTAGTGGATATCAGGCTCTCTGACAATCCAGTGGCCGATCCTGGACAAGGTGGTATCCCAAGATTTGTTTTGGTCGCCCGTTTAGCTAAAGTTGAAATGTTGAATGGGAGTGAGGTAAGTCCTCGTGAAAGAAAAGAGTCAGAGATTCGGTATGTTCGATTAGTGATGTCAAAAATGCAAGGAAATACCGAAGATATCCAGTGGCTTCATCCCAGGTTTGCGGAGCTTAAGGTTTTTCATGGAATTGAGGATGAAAAGCCACTGGTTGGAACAGCAGGCCCTCAGAAAATGTCTTCAGGACTTCTGTCTATTACTCTCAAATGTGTGGGAGCATCTATTGGTGAGAAACCATCATTGGTGAAGAAACTGCCAGGCACCACAACAGTTATAGTTGGAAAATTGAAAGTTCTTTGTGAAAGCTTTTTCAAGCTGAAGTCTATCAAACTGAAATTGTTTCTTGAAGAAAAGGGTTCTCCACTGCCATTATTGCTTGATGATGAAATGGCAACTTTGACGGACCTTGGGATTGGAAATGAATCAACCATTCTTGTAGATGAAGAGAGTTAA

Protein Analysis

535

Amino Acids

59.38

Weight (kDa)

5.32

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP_GLY PF01302 6 - 72 4.3e-21 CAP-Gly domain
LRR_9 PF14580 231 - 394 3.9e-07 Leucine-rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1412
AccB7I CCANNNNNTGG 1 cut(s) 1304
AciI CCGC 4 cut(s) 38, 126, 769, 1259
AclWI GGATC 5 cut(s) 38, 183, 546, 1008, 1070
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 3 cut(s) 354, 460, 961
AcuI CTGAAG 2 cut(s) 1317, 1490
AfaI GTAC 2 cut(s) 71, 448
AfiI CCNNNNNNNGG 6 cut(s) 37, 86, 204, 896, 1085, 1304
AflII CTTAAG 1 cut(s) 1265
AhlI ACTAGT 1 cut(s) 1039
AjnI CCWGG 6 cut(s) 171, 424, 651, 1078, 1250, 1408
AjuI GAANNNNNNNTTGG 2 cut(s) 1376, 1408
Alw26I GTCTC 1 cut(s) 423
AlwI GGATC 5 cut(s) 38, 183, 546, 1008, 1070
Ama87I CYCGRG 2 cut(s) 17, 935
AoxI GGCC 3 cut(s) 77, 1071, 1315
ApeKI GCWGC 3 cut(s) 22, 238, 847
ApoI RAATTY 3 cut(s) 354, 460, 961
AspS9I GGNCC 6 cut(s) 77, 195, 207, 648, 1316, 1555
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 4 cut(s) 278, 924, 1391, 1408
AvaI CYCGRG 2 cut(s) 17, 935
AvaII GGWCC 4 cut(s) 195, 207, 648, 1555
BaeGI GKGCMC 1 cut(s) 101
BaeI ACNNNNGTAYC 2 cut(s) 250, 283
BanI GGYRCC 1 cut(s) 1412
BauI CACGAG 1 cut(s) 1161
BbsI GAAGAC 2 cut(s) 792, 1323
BbvI GCAGC 3 cut(s) 34, 225, 859
BccI CCATC 5 cut(s) 137, 158, 837, 890, 1396
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 6 cut(s) 173, 426, 653, 1080, 1252, 1410
BciVI GTATCC 1 cut(s) 1103
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 423
BcuI ACTAGT 1 cut(s) 1039
BfaI CTAG 1 cut(s) 1040
BfrI CTTAAG 1 cut(s) 1265
BfuI GTATCC 1 cut(s) 1103
BisI GCNGC 4 cut(s) 23, 239, 770, 848
BlsI GCNGC 4 cut(s) 24, 240, 771, 849
Bme1390I CCNGG 7 cut(s) 173, 193, 426, 653, 1080, 1252, 1410
Bme18I GGWCC 4 cut(s) 195, 207, 648, 1555
BmeT110I CYCGRG 2 cut(s) 17, 935
BmgT120I GGNCC 6 cut(s) 77, 195, 207, 648, 1316, 1555
BmiI GGNNCC 6 cut(s) 78, 148, 196, 209, 650, 1414
BmrFI CCNGG 7 cut(s) 173, 193, 426, 653, 1080, 1252, 1410
BmsI GCATC 4 cut(s) 404, 743, 894, 1379
BoxI GACNNNNGTC 1 cut(s) 1342
BpiI GAAGAC 2 cut(s) 792, 1323
BpmI CTGGAG 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 5 cut(s) 85, 262, 651, 1250, 1558
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 86, 204, 896, 1085, 1304
Bse1I ACTGG 4 cut(s) 487, 1067, 1237, 1305
BseBI CCWGG 6 cut(s) 173, 426, 653, 1080, 1252, 1410
BseDI CCNNGG 5 cut(s) 85, 262, 651, 1250, 1558
BseGI GGATG 4 cut(s) 295, 514, 1246, 1294
BseLI CCNNNNNNNGG 6 cut(s) 37, 86, 204, 896, 1085, 1304
BseMII CTCAG 3 cut(s) 48, 232, 1334
BseNI ACTGG 4 cut(s) 487, 1067, 1237, 1305
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 3 cut(s) 34, 225, 859
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 79, 1073, 1317
BshNI GGYRCC 1 cut(s) 1412
BsiEI CGRYCG 1 cut(s) 187
BsiHKCI CYCGRG 2 cut(s) 17, 935
BsiSI CCGG 2 cut(s) 192, 536
BslFI GGGAC 3 cut(s) 73, 134, 193
BslI CCNNNNNNNGG 6 cut(s) 37, 86, 204, 896, 1085, 1304
BsmAI GTCTC 1 cut(s) 423
BsmFI GGGAC 3 cut(s) 73, 134, 193
BsnI GGCC 3 cut(s) 79, 1073, 1317
Bso31I GGTCTC 1 cut(s) 423
BsoBI CYCGRG 2 cut(s) 17, 935
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 7 cut(s) 43, 188, 519, 538, 760, 1000, 1075
BspACI CCGC 4 cut(s) 38, 126, 769, 1259
BspANI GGCC 3 cut(s) 79, 1073, 1317
BspCNI CTCAG 3 cut(s) 47, 231, 1333
BspLI GGNNCC 6 cut(s) 78, 148, 196, 209, 650, 1414
BspPI GGATC 5 cut(s) 38, 183, 546, 1008, 1070
BspT107I GGYRCC 1 cut(s) 1412
BspTI CTTAAG 1 cut(s) 1265
BspTNI GGTCTC 1 cut(s) 423
BsrI ACTGG 4 cut(s) 487, 1067, 1237, 1305
BssECI CCNNGG 5 cut(s) 85, 262, 651, 1250, 1558
BssMI GATC 7 cut(s) 43, 188, 519, 538, 760, 1000, 1075
BssSI CACGAG 1 cut(s) 1161
BssT1I CCWWGG 2 cut(s) 85, 1558
Bst2BI CACGAG 1 cut(s) 1161
Bst2UI CCWGG 6 cut(s) 173, 426, 653, 1080, 1252, 1410
Bst4CI ACNGT 4 cut(s) 64, 531, 794, 1423
Bst6I CTCTTC 2 cut(s) 279, 1590
BstAFI CTTAAG 1 cut(s) 1265
BstAPI GCANNNNNTGC 2 cut(s) 522, 913
BstC8I GCNNGC 5 cut(s) 40, 137, 243, 732, 1315
BstDEI CTNAG 4 cut(s) 34, 218, 368, 1320
BstENI CCTNNNNNAGG 2 cut(s) 84, 1083
BstF5I GGATG 4 cut(s) 295, 514, 1246, 1294
BstKTI GATC 7 cut(s) 46, 191, 522, 541, 763, 1003, 1078
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 7 cut(s) 43, 188, 519, 538, 760, 1000, 1075
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 5 cut(s) 132, 522, 913, 1121, 1525
BstNI CCWGG 6 cut(s) 173, 426, 653, 1080, 1252, 1410
BstPAI GACNNNNGTC 1 cut(s) 1342
BstSCI CCNGG 7 cut(s) 171, 191, 424, 651, 1078, 1250, 1408
BstSLI GKGCMC 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 34, 225, 859
BstV2I GAAGAC 2 cut(s) 792, 1323
BstX2I RGATCY 2 cut(s) 538, 1000
BstYI RGATCY 2 cut(s) 538, 1000
BsuI GTATCC 1 cut(s) 1103
BsuRI GGCC 3 cut(s) 79, 1073, 1317
BtsCI GGATG 4 cut(s) 295, 514, 1246, 1294
BtsI GCAGTG 1 cut(s) 1514
BtsIMutI CAGTG 4 cut(s) 1074, 1244, 1298, 1514
Cac8I GCNNGC 5 cut(s) 40, 137, 243, 732, 1315
Cfr13I GGNCC 6 cut(s) 77, 195, 207, 648, 1316, 1555
Csp6I GTAC 2 cut(s) 70, 447
CviAII CATG 3 cut(s) 102, 908, 1277
CviQI GTAC 2 cut(s) 70, 447
DdeI CTNAG 4 cut(s) 34, 218, 368, 1320
DpnI GATC 7 cut(s) 45, 190, 521, 540, 762, 1002, 1077
DpnII GATC 7 cut(s) 43, 188, 519, 538, 760, 1000, 1075
DraI TTTAAA 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 1071
Eam1104I CTCTTC 2 cut(s) 279, 1590
EarI CTCTTC 2 cut(s) 279, 1590
Eco130I CCWWGG 2 cut(s) 85, 1558
Eco31I GGTCTC 1 cut(s) 423
Eco32I GATATC 2 cut(s) 1048, 1234
Eco47I GGWCC 4 cut(s) 195, 207, 648, 1555
Eco57I CTGAAG 2 cut(s) 1317, 1490
Eco88I CYCGRG 2 cut(s) 17, 935
EcoNI CCTNNNNNAGG 2 cut(s) 84, 1083
EcoO109I RGGNCCY 3 cut(s) 77, 195, 1316
EcoRII CCWGG 6 cut(s) 171, 424, 651, 1078, 1250, 1408
EcoRV GATATC 2 cut(s) 1048, 1234
EcoT14I CCWWGG 2 cut(s) 85, 1558
EcoT22I ATGCAT 1 cut(s) 909
ErhI CCWWGG 2 cut(s) 85, 1558
FaeI CATG 3 cut(s) 105, 911, 1280
FaqI GGGAC 3 cut(s) 73, 134, 193
FatI CATG 3 cut(s) 101, 907, 1276
FauI CCCGC 1 cut(s) 31
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 4 cut(s) 23, 239, 770, 848
FokI GGATG 4 cut(s) 302, 521, 1233, 1301
Fsp4HI GCNGC 4 cut(s) 23, 239, 770, 848
FspBI CTAG 1 cut(s) 1040
GluI GCNGC 4 cut(s) 23, 239, 770, 848
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 3 cut(s) 79, 1073, 1317
HapII CCGG 2 cut(s) 192, 536
Hin1II CATG 3 cut(s) 105, 911, 1280
HincII GTYRAC 2 cut(s) 387, 1015
HindII GTYRAC 2 cut(s) 387, 1015
HindIII AAGCTT 1 cut(s) 1456
HpaII CCGG 2 cut(s) 192, 536
HphI GGTGA 4 cut(s) 278, 924, 1391, 1408
Hpy166II GTNNAC 3 cut(s) 31, 387, 1015
Hpy188I TCNGA 9 cut(s) 14, 110, 184, 257, 499, 777, 1060, 1180, 1323
Hpy188III TCNNGA 8 cut(s) 278, 359, 782, 817, 890, 1163, 1335, 1496
Hpy8I GTNNAC 3 cut(s) 31, 387, 1015
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 3 cut(s) 460, 499, 983
HpyCH4III ACNGT 4 cut(s) 64, 531, 794, 1423
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 6 cut(s) 241, 395, 734, 746, 907, 1216
HpyF10VI GCNNNNNNNGC 5 cut(s) 132, 522, 913, 1121, 1525
HpyF3I CTNAG 4 cut(s) 34, 218, 368, 1320
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 3 cut(s) 105, 911, 1280
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 7 cut(s) 43, 188, 519, 538, 760, 1000, 1075
LmnI GCTCC 6 cut(s) 152, 258, 469, 844, 1261, 1367
Lsp1109I GCAGC 3 cut(s) 34, 225, 859
LweI GCATC 4 cut(s) 404, 743, 894, 1379
MaeI CTAG 1 cut(s) 1040
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 2 cut(s) 164, 266
MalI GATC 7 cut(s) 45, 190, 521, 540, 762, 1002, 1077
MboI GATC 7 cut(s) 43, 188, 519, 538, 760, 1000, 1075
MboII GAAGA 9 cut(s) 293, 296, 701, 797, 968, 1241, 1323, 1411, 1511
MflI RGATCY 2 cut(s) 538, 1000
MhlI GDGCHC 1 cut(s) 101
MlyI GAGTC 6 cut(s) 9, 36, 120, 888, 1010, 1184
MmeI TCCRAC 5 cut(s) 88, 207, 322, 1285, 1411
Mph1103I ATGCAT 1 cut(s) 909
MseI TTAA 5 cut(s) 602, 626, 666, 1266, 1603
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 38, 126
MspCI CTTAAG 1 cut(s) 1265
MspI CCGG 2 cut(s) 192, 536
MspR9I CCNGG 7 cut(s) 173, 193, 426, 653, 1080, 1252, 1410
MvaI CCWGG 6 cut(s) 173, 426, 653, 1080, 1252, 1410
MwoI GCNNNNNNNGC 5 cut(s) 132, 522, 913, 1121, 1525
NciI CCSGG 1 cut(s) 193
NdeII GATC 7 cut(s) 43, 188, 519, 538, 760, 1000, 1075
NlaIII CATG 3 cut(s) 105, 911, 1280
NlaIV GGNNCC 6 cut(s) 78, 148, 196, 209, 650, 1414
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 909
PcsI WCGNNNNNNNCGW 1 cut(s) 1192
PfeI GAWTC 5 cut(s) 214, 778, 929, 1183, 1574
PflMI CCANNNNNTGG 1 cut(s) 1304
PfoI TCCNGGA 2 cut(s) 424, 1078
PkrI GCNGC 4 cut(s) 24, 240, 771, 849
PleI GAGTC 6 cut(s) 9, 35, 119, 887, 1010, 1183
PpsI GAGTC 6 cut(s) 9, 35, 119, 887, 1010, 1183
PpuMI RGGWCCY 1 cut(s) 195
PshAI GACNNNNGTC 1 cut(s) 1342
Psp5II RGGWCCY 1 cut(s) 195
Psp6I CCWGG 6 cut(s) 171, 424, 651, 1078, 1250, 1408
PspGI CCWGG 6 cut(s) 171, 424, 651, 1078, 1250, 1408
PspN4I GGNNCC 6 cut(s) 78, 148, 196, 209, 650, 1414
PspPI GGNCC 6 cut(s) 77, 195, 207, 648, 1316, 1555
PspPPI RGGWCCY 1 cut(s) 195
PsuI RGATCY 2 cut(s) 538, 1000
RsaI GTAC 2 cut(s) 71, 448
RsaNI GTAC 2 cut(s) 70, 447
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 5 cut(s) 602, 626, 666, 1266, 1603
SatI GCNGC 4 cut(s) 23, 239, 770, 848
Sau3AI GATC 7 cut(s) 43, 188, 519, 538, 760, 1000, 1075
Sau96I GGNCC 6 cut(s) 77, 195, 207, 648, 1316, 1555
SchI GAGTC 6 cut(s) 9, 36, 120, 888, 1010, 1184
ScrFI CCNGG 7 cut(s) 173, 193, 426, 653, 1080, 1252, 1410
SduI GDGCHC 1 cut(s) 101
SfaNI GCATC 4 cut(s) 404, 743, 894, 1379
SinI GGWCC 4 cut(s) 195, 207, 648, 1555
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 2 cut(s) 276, 1265
SmoI CTYRAG 2 cut(s) 276, 1265
SpeI ACTAGT 1 cut(s) 1039
SsiI CCGC 4 cut(s) 38, 126, 769, 1259
SspMI CTAG 1 cut(s) 1040
StyD4I CCNGG 7 cut(s) 171, 191, 424, 651, 1078, 1250, 1408
StyI CCWWGG 2 cut(s) 85, 1558
TaaI ACNGT 4 cut(s) 64, 531, 794, 1423
TaiI ACGT 1 cut(s) 236
TaqI TCGA 5 cut(s) 52, 114, 311, 373, 1195
TaqII GACCGA 2 cut(s) 195, 201
TauI GCSGC 1 cut(s) 772
TfiI GAWTC 5 cut(s) 214, 778, 929, 1183, 1574
Tru1I TTAA 5 cut(s) 602, 626, 666, 1266, 1603
Tru9I TTAA 5 cut(s) 602, 626, 666, 1266, 1603
TscAI CASTG 4 cut(s) 1074, 1244, 1305, 1521
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 3 cut(s) 22, 238, 847
Tsp45I GTSAC 1 cut(s) 266
TspGWI ACGGA 1 cut(s) 1568
TspRI CASTG 4 cut(s) 1074, 1244, 1305, 1521
Van91I CCANNNNNTGG 1 cut(s) 1304
Vha464I CTTAAG 1 cut(s) 1265
VpaK11BI GGWCC 4 cut(s) 195, 207, 648, 1555
XagI CCTNNNNNAGG 2 cut(s) 84, 1083
XapI RAATTY 3 cut(s) 354, 460, 961
XspI CTAG 1 cut(s) 1040
Zsp2I ATGCAT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.