AT1G71865

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020212
Physical Location & Seq
Forward (+)
27029116 .. 27030560
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71865.1

Sequence Viewer

Length: 300 bp
ATGAGTTTTGCATGCCTCGTGTGCCATAGTGTAGAGAGCCCATCCCACTCATTTAGAAGCTACTCTGTTTCTAGCTCAGACAACGAGGGAAGATGCTCTGTGATTGCAAGCTGCCTCACAAGGAAATCACTCATTCAAGCTGCAAGATCGAACCCTTTCCCTGCATCGTCATCAAAGGTAACCCCACAACCCAATTTCCAAGCAGGTGAAGGAGCCTCACCACGGTTAGTACGAAGCCGTGCAGTGAGAAGAGACATTGTCAGAGACTGGAACTTCAACGAAATTGAGACAGAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.91

Weight (kDa)

8.91

Isoelectric Point (pI)

81.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71865
malus_domestica MD05G1038600.v1.1 MD10G1044400.v1.1
prunus_persica Prupe.8G051200_v2.0.a1
pyrus_communis pycom05g03150 pycom10g03100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 194
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 137, 277
AluBI AGCT 5 cut(s) 60, 75, 111, 140, 295
AluI AGCT 5 cut(s) 60, 75, 111, 140, 295
Alw26I GTCTC 3 cut(s) 246, 258, 281
AlwNI CAGNNNCTG 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 111, 140
Asp700I GAANNNNTTC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 210, 218
BanII GRGCYC 1 cut(s) 41
BauI CACGAG 1 cut(s) 17
BbvI GCAGC 2 cut(s) 98, 127
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 222
BcoDI GTCTC 3 cut(s) 246, 258, 281
BfaI CTAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 194
BisI GCNGC 2 cut(s) 112, 141
BlsI GCNGC 2 cut(s) 113, 142
BmiI GGNNCC 1 cut(s) 214
BmsI GCATC 2 cut(s) 83, 173
BsaJI CCNNGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 98, 127
BsgI GTGCAG 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 3 cut(s) 246, 258, 281
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 89
BspLI GGNNCC 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 1 cut(s) 146
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 13, 109
BstDEI CTNAG 1 cut(s) 76
BstDSI CCRYGG 1 cut(s) 221
BstEII GGTNACC 1 cut(s) 178
BstF5I GGATG 1 cut(s) 41
BstKTI GATC 1 cut(s) 149
BstMAI GTCTC 3 cut(s) 246, 258, 281
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNSI RCATGY 1 cut(s) 15
BstPI GGTNACC 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 98, 127
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 13, 109
CaiI CAGNNNCTG 1 cut(s) 267
Csp6I GTAC 1 cut(s) 230
CviAII CATG 1 cut(s) 12
CviJI RGCY 8 cut(s) 39, 60, 75, 111, 140, 215, 237, 295
CviKI_1 RGCY 8 cut(s) 39, 60, 75, 111, 140, 215, 237, 295
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 1 cut(s) 76
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 41
Eco91I GGTNACC 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 1 cut(s) 15
FaiI YATR 2 cut(s) 13, 27
FatI CATG 1 cut(s) 11
Fnu4HI GCNGC 2 cut(s) 112, 141
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 112, 141
FspBI CTAG 1 cut(s) 72
GluI GCNGC 2 cut(s) 112, 141
Hin1II CATG 1 cut(s) 15
HphI GGTGA 2 cut(s) 210, 218
Hpy188I TCNGA 2 cut(s) 79, 263
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4V TGCA 5 cut(s) 11, 107, 143, 164, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 1 cut(s) 15
Kzo9I GATC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 3 cut(s) 174, 189, 253
Lsp1109I GCAGC 2 cut(s) 98, 127
LweI GCATC 2 cut(s) 83, 173
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 2 cut(s) 102, 261
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 2 cut(s) 193, 282
MnlI CCTC 4 cut(s) 26, 79, 125, 226
MroXI GAANNNNTTC 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 1 cut(s) 146
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 1 cut(s) 214
NspI RCATGY 1 cut(s) 15
PaeI GCATGC 1 cut(s) 15
PaqCI CACCTGC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 155
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 113, 142
PspEI GGTNACC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 267
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SatI GCNGC 2 cut(s) 112, 141
Sau3AI GATC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 41
SetI ASST 7 cut(s) 62, 77, 113, 142, 180, 208, 297
SfaNI GCATC 2 cut(s) 83, 173
SphI GCATGC 1 cut(s) 15
Sse9I AATT 2 cut(s) 193, 282
SspMI CTAG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 149
TasI AATT 2 cut(s) 193, 282
TscAI CASTG 1 cut(s) 249
TseI GCWGC 2 cut(s) 111, 140
TspRI CASTG 1 cut(s) 249
Tth111I GACNNNGTC 1 cut(s) 257
XceI RCATGY 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.