Prupe.8G051200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
5586449 .. 5587049
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G051200.1

Sequence Viewer

Length: 300 bp
ATGAGTCTGGCATGCCTGGTGTGCCATAGTGTAGAAAGTCCATCGCACTCTTTTAGGAGTTACTCTGTTTCAAGTGCAGAAAATGAGGGAAGATGTTCTGCCATTGCCAACTGCTTAGCGAGGAGGCCATCTTTTCCACTACCAACACATTCCAACATTGCATCATCCAAAGTAACCCCACAACCAACTCTTCCAAACAGCGGTTCCATGTCAGGTGCTCCACGGCTAGTTCGAAGCCGGGCTGTGAGAAGGGACATCGTGCAAGACTGGAACTTTGATGAGGTTGTGATGGGGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.76

Weight (kDa)

9.3

Isoelectric Point (pI)

83.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71865
malus_domestica MD05G1038600.v1.1 MD10G1044400.v1.1
prunus_persica Prupe.8G051200_v2.0.a1
pyrus_communis pycom05g03150 pycom10g03100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 1 cut(s) 72
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
Alw21I GWGCWC 1 cut(s) 220
AoxI GGCC 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
Asp700I GAANNNNTTC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 239
AsuII TTCGAA 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 220
BccI CCATC 3 cut(s) 49, 136, 283
BceAI ACGGC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 17
BcnI CCSGG 1 cut(s) 239
BfaI CTAG 1 cut(s) 227
BlpI GCTNAGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 17, 239
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 2 cut(s) 17, 239
BmsI GCATC 1 cut(s) 170
Bpu1102I GCTNAGC 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 2 cut(s) 102, 156
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 2 cut(s) 102, 156
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 127
Bsp119I TTCGAA 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 220
Bsp1720I GCTNAGC 1 cut(s) 115
BspACI CCGC 1 cut(s) 201
BspANI GGCC 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 205
BspT104I TTCGAA 1 cut(s) 232
BsrDI GCAATG 2 cut(s) 102, 156
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 115
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 15, 237
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 13
CviAII CATG 2 cut(s) 12, 208
CviJI RGCY 4 cut(s) 127, 226, 237, 242
CviKI_1 RGCY 4 cut(s) 127, 226, 237, 242
DdeI CTNAG 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 15, 211
FaiI YATR 3 cut(s) 13, 27, 209
FaqI GGGAC 1 cut(s) 266
FatI CATG 2 cut(s) 11, 207
FokI GGATG 1 cut(s) 151
FspBI CTAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 238
Hin1II CATG 2 cut(s) 15, 211
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 77, 161, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 2 cut(s) 15, 211
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 5 cut(s) 2, 29, 198, 251, 253
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 2 cut(s) 59, 172
MboII GAAGA 2 cut(s) 102, 182
MhlI GDGCHC 1 cut(s) 220
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 4 cut(s) 79, 114, 117, 274
MroXI GAANNNNTTC 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 2 cut(s) 17, 239
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 239
NlaIII CATG 2 cut(s) 15, 211
NlaIV GGNNCC 1 cut(s) 205
NspI RCATGY 1 cut(s) 15
NspV TTCGAA 1 cut(s) 232
PaeI GCATGC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 94
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 17, 239
SduI GDGCHC 1 cut(s) 220
SetI ASST 2 cut(s) 217, 285
SfaNI GCATC 1 cut(s) 170
SfuI TTCGAA 1 cut(s) 232
SphI GCATGC 1 cut(s) 15
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 15, 237
TaqI TCGA 1 cut(s) 232
XceI RCATGY 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 94
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.