MD05G1038600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0020212
Physical Location & Seq
Reverse (-)
6526806 .. 6527145
340 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1038600.v1.1.491

Sequence Viewer

Length: 297 bp
ATGAGTTTGGCATGCCTTGTGTGCAGTGTAGAAAGTCCGTCACACTCTTTTAGGAGTTACTCTGTATCGAGCACAGAAAATGATGGAAGATGTTCTGCTATTGCCAACTGCTTAACACGGAGGCCATCTCTTCCATTGCCAAGACATTCCAACATTGCATCATCCAAAGTAACCCCGCAACCAACTCTTTCAAACAGCGGTTCCATACCAGGTACCCCAAGGCTAGTTCGAAGCCGGGCTGTGAGAAGGGATATCGTGAGGGACTGGAACTTTGACGAGGTTGTGATGGGGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.73

Weight (kDa)

10.11

Isoelectric Point (pI)

73.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71865
malus_domestica MD05G1038600.v1.1 MD10G1044400.v1.1
prunus_persica Prupe.8G051200_v2.0.a1
pyrus_communis pycom05g03150 pycom10g03100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 2 cut(s) 176, 198
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 1 cut(s) 192
AjnI CCWGG 1 cut(s) 208
Alw21I GWGCWC 1 cut(s) 74
AoxI GGCC 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
Asp700I GAANNNNTTC 1 cut(s) 91
Asp718I GGTACC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 229
BanI GGYRCC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 74
BccI CCATC 3 cut(s) 77, 133, 280
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 1 cut(s) 236
BfaI CTAG 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 210, 236
BmiI GGNNCC 2 cut(s) 202, 214
BmrFI CCNGG 2 cut(s) 210, 236
BmsI GCATC 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 112, 144
Bpu14I TTCGAA 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 2 cut(s) 134, 153
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 161
BseMI GCAATG 2 cut(s) 134, 153
BseNI ACTGG 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 43
BshFI GGCC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 74
BspACI CCGC 2 cut(s) 176, 198
BspANI GGCC 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 202, 214
BspT104I TTCGAA 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 212
BsrDI GCAATG 2 cut(s) 134, 153
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 161
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 208, 234
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 13
CsiI ACCWGGT 1 cut(s) 208
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 12
CviJI RGCY 4 cut(s) 124, 223, 234, 239
CviKI_1 RGCY 4 cut(s) 124, 223, 234, 239
CviQI GTAC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 218
Eco32I GATATC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 1 cut(s) 15
FaiI YATR 2 cut(s) 13, 206
FaqI GGGAC 1 cut(s) 275
FatI CATG 1 cut(s) 11
FauI CCCGC 1 cut(s) 183
FokI GGATG 1 cut(s) 148
FspBI CTAG 1 cut(s) 224
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 235
Hin1II CATG 1 cut(s) 15
HpaII CCGG 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 24, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 15
KpnI GGTACC 1 cut(s) 216
LpnPI CCDG 4 cut(s) 195, 222, 248, 250
LweI GCATC 1 cut(s) 167
MabI ACCWGGT 1 cut(s) 208
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 3 cut(s) 39, 56, 169
MboII GAAGA 2 cut(s) 99, 122
MhlI GDGCHC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 3 cut(s) 114, 252, 271
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 2 cut(s) 113, 295
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 210, 236
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 236
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 2 cut(s) 202, 214
NmuCI GTSAC 1 cut(s) 39
NspI RCATGY 1 cut(s) 15
NspV TTCGAA 1 cut(s) 229
PaeI GCATGC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 202, 214
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 113, 295
ScrFI CCNGG 2 cut(s) 210, 236
SduI GDGCHC 1 cut(s) 74
SetI ASST 2 cut(s) 214, 282
SexAI ACCWGGT 1 cut(s) 208
SfaNI GCATC 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 229
SphI GCATGC 1 cut(s) 15
SsiI CCGC 2 cut(s) 176, 198
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 208, 234
StyI CCWWGG 1 cut(s) 218
TaqI TCGA 2 cut(s) 68, 229
Tru1I TTAA 2 cut(s) 113, 295
Tru9I TTAA 2 cut(s) 113, 295
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 39
TspGWI ACGGA 2 cut(s) 27, 133
TspRI CASTG 1 cut(s) 31
XceI RCATGY 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.